NA ----> NA
Intron 1 GTATGTGCAA ... GTTTGATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.42 | 18 | 39 | 39 |
| A2 | 55.42 | 37 | 40 | 52 |
| A3 | 61.02 | 23 | 31 | 41 |
| A4 | 63.22 | 16 | 24 | 31 |
| A5 | 84.62 | 2 | 12 | 10 |
| A6 | 47.83 | 6 | 5 | 6 |
| A7 | 51.72 | 21 | 17 | 28 |
| A8 | 72.55 | 7 | 21 | 16 |
| A9 | 55.29 | 19 | 12 | 35 |
| A10 | 59.18 | 10 | 12 | 17 |
>TRINITY_DN43230_c0_g1_i1 from sample A7 / Example spliced isoformGAAGAGCAAGACTGAAACTACATGTGTTATACCTCCAACAAATAGTGTTTCAGCATTTAGAGCTATACCTATAAGTATGAGAAAGCCAACCATTTCTGGAATTGAAGCACAGAAGAGCAAGACTGAAACTACATGTGTTATACCTCCAGCAAATAGTGTTTCGGCATTTAGAGCTATACCTTCAAGTATGAGAAAGGAAA
CCTATTCTAGAATTGAAACACAGAAGAGCAAGACTGAAACTACATGTGTTATACCTCCAACAAATAGTGTTTCACCATTATACCTCCAGCAAATAGTGTTTCTGCATTTAGAGCTATACCTATAAGTATGAGAAAGCCAACGCCTTTACCCCCAGGAGCTGGGGCTGTGACACACATGAAGGGAGGTGTGTCTCTTCAGT
CAAACAAAGTTGATTGTCATGGCACAACACTTTTCAGAAAACGACAAAAGGCTTCAGAGTCAGCAACTAACAAGGTTATTCCTGGCACGAAGTCTGATAAAGAGGTAGCAAGTGCAGCTACCGATCCCACAGTGGAGCTTGTAACGTCCTTGGACAATATTCAATCAGCTTATCCAGATTCCAGTTTACAGGGCAAGTCC
TCATATCAGAAAGGCTTCTCAGCATTTAAGAATGATATAATGAGCATATCTACGGGCAGGCGAGGAATCAGTGACAGTGATAGCAAAATGGCCTCGAGTTTAAGTGACAGAGGAAAACATTTTCAGCACCCAACATGTGGTATGACAGGTAAAGTTCATCTGCAAAGCTTCTTTGAAAAGGAGGGGAAGCGCATTGGGGA
GTGTACTCTTGGTGAATCATTATGGAATAATGATGGGACTGCTCTGCAGGTCACTAAAGCAAGCTCAAAAAAAGGGCCAGGTCTTTTTTCAACAACCGCTGCTCCCATTCTTGAATCCCAGGACCCTTCCAGATCACTTGAAATCTCTTCAAATGATCAGGTGCCTGGAAATATGGCTACATCAAAGGAGAGTTCCGTTG
ATTTCAAGTCATTGCAGGCTGAATGTACCCGTTGTGATGGAGAGTCCAGCAGTGCAGAGTCATCAAGATCGGAGAAACCACAAGTCGATGTTTTAGTGCAACAAGCTATTTTTACTAATCCTTCCTCTCCTCAAAACCGCGAAGAAATGCAAGTAGAAGCTTTTAGTGCATCCTCCAGAATTAGTTTCCTTTGCAAATCA
TTAATCGAATCCTATTACAAAGCTCCAGGCCAATGCTACACACAAAATCAAGGGGATCAAATGGCAATGATGAGAATAGATCAGATGTCGTGTAAGATCAAGATGGCTCATAAAGAAGGTGCTTCACAACTTCCTTTCAAATCTGGTCTTCAACAGGCACAACAAAATTTTGGTAAGTGTGTTGAAGGATATGAATGTAG
TTTTCAGAGCTCTGACGTTGATGGACGTGTTGGCAAAGTGGATGCAGACAAATTGCAAAAGAAGTCTAACCAGACAGAGATTGACATTTGCACTTCAGGTTCCAAACGGAAAGGCACAATGCTTGGAGCAGATATAGAGGCCATACTTCCTTCACAATACGGGGATTGCAGTAGCTCAAAAGCTGAGGGGTTGCTTCCAG
AAAACAGTATTGCAAGGCATCCTAGTTCCCAGGCTTCAACATTAGAAAACCGACATATGGATACAGGTCTTCATTCTTCCAAAAGATTAAGGAAGACACTCCACCGTGATGAGAAAATGCTAGATTCCTTTCATTTAGAAAAGGTTGTAGCTCAGTGCAGTGGAGCTAAAGGCAGCAAAGACCCAGAAGATATTCAGTTA
CATCATAGAGCAGAACTTACAGAGGCATCTCTGGATGCAATGGAATATAATAGAATGACTGTAATTGAAAAGGATTCAAGAGAGCAACATCATGGACTACTGCATCTGTCAAACCAGGGGGATGTGTCACCATCTTGTCTTGGAGAACATCCTCGTGATAGTGACCATCTAGCAAGCTCTAGTTTGGTCAATTATACTGG
TTTGCTCCATACTCCAGTTGAACAAAATATTGTGGGATCCAAGCAGCATTCCGCAGAAAATATAACATTGCAGACAAATGTTGAATATTCTGGTAAGAGTGCTTCTTCCAGTTCACAAAGGAAGATAGATTTGGCTTCTGTGCTATCCCTGCCTTGGATCAAGCGTTGGTGTCCCTCATATCAGATTAAATCCTCTCTGT
TTGAGATGCATTGTGGTTCTGCAGCGACGAGGGAAATCAATCTTAGATGTCATTCAGTGAAAACGTTACCAAGTGCTGCTGCAATGGCCATTGTTGGGATTGCTTCCCGACAACTGCAGCCTTGTAAGCGGGAAGGGAAGAGATCCTCCAGAGTCTAGATTGCAGTGGGTTTTACGGTGAATGGAACTGCAGAGTAGCAG
TAAATTTACAATAATTCAGATTGTCAAAGGGGTTTAGACATAGCTCAGAGAAAATCAGAGTTCTGAACGCTTGTTTCATGTGAGCATATACCAGAGTGTGGGAGAGGAGACAGGAAGGAGGGGGAATGGGTCAAGACTGAACTTCACGTTGGCACCAAAATGCAATTTTTGGAGGATTGATTGCCCCAATTTTCTGATAT
TTCAGGTCAGGATCTGAAACAATAAATGTAAAATCCGAATCTCAATATTTGCAGTTGCAGTTATGATGGTACTATTTTACCAGATTTATTATCTCTTCTCTATTCGTTTCCTTATGCTTAACCACCAATCTGTCTCAGTTTTCTGGCTGATCTATTCTTTTAGCATTCAATCTAAACAGTCGTATTTAATGAAACCCAAG
ATGTTTGTTCAAAATTTGAATTATTAATTTATTTGTGCC
>TRINITY_DN43230_c0_g1_i2 from sample A7 / Example unspliced isoform:GAAGAGCAAGACTGAAACTACATGTGTTATACCTCCAACAAATAGTGTTTCAGCATTTAGAGCTATACCTATAAGTATGAGAAAGCCAACCATTTCTGGAATTGAAGCACAGAAGAGCAAGACTGAAACTACATGTGTTATACCTCCAGCAAATAGTGTTTCGGCATTTAGAGCTATACCTTCAAGTATGAGAAAGGAAA
CCTATTCTAGAATTGAAACACAGAAGAGCAAGACTGAAACTACATGTGTTATACCTCCAACAAATAGTGTTTCACCATTATACCTCCAGCAAATAGTGTTTCTGCATTTAGAGCTATACCTATAAGTATGAGAAAGCCAACGCCTTTACCCCCAGGAGCTGGGGCTGTGACACACATGAAGGGAGGTGTGTCTCTTCAGT
CAAACAAAGTTGATTGTCATGGCACAACACTTTTCAGAAAACGACAAAAGGCTTCAGAGTCAGCAACTAACAAGGTTATTCCTGGCACGAAGTCTGATAAAGAGgtatgtgcaaagagaggaaattcgtattcattttacaataaaacaaataataaaggtgcaggtggaggattgacagttaagtttgaaatgtttgat
aagGTAGCAAGTGCAGCTACCGATCCCACAGTGGAGCTTGTAACGTCCTTGGACAATATTCAATCAGCTTATCCAGATTCCAGTTTACAGGGCAAGTCCTCATATCAGAAAGGCTTCTCAGCATTTAAGAATGATATAATGAGCATATCTACGGGCAGGCGAGGAATCAGTGACAGTGATAGCAAAATGGCCTCGAGTTT
AAGTGACAGAGGAAAACATTTTCAGCACCCAACATGTGGTATGACAGGTAAAGTTCATCTGCAAAGCTTCTTTGAAAAGGAGGGGAAGCGCATTGGGGAGTGTACTCTTGGTGAATCATTATGGAATAATGATGGGACTGCTCTGCAGGTCACTAAAGCAAGCTCAAAAAAAGGGCCAGGTCTTTTTTCAACAACCGCTG
CTCCCATTCTTGAATCCCAGGACCCTTCCAGATCACTTGAAATCTCTTCAAATGATCAGGTGCCTGGAAATATGGCTACATCAAAGGAGAGTTCCGTTGATTTCAAGTCATTGCAGGCTGAATGTACCCGTTGTGATGGAGAGTCCAGCAGTGCAGAGTCATCAAGATCGGAGAAACCACAAGTCGATGTTTTAGTGCAA
CAAGCTATTTTTACTAATCCTTCCTCTCCTCAAAACCGCGAAGAAATGCAAGTAGAAGCTTTTAGTGCATCCTCCAGAATTAGTTTCCTTTGCAAATCATTAATCGAATCCTATTACAAAGCTCCAGGCCAATGCTACACACAAAATCAAGGGGATCAAATGGCAATGATGAGAATAGATCAGATGTCGTGTAAGATCAA
GATGGCTCATAAAGAAGGTGCTTCACAACTTCCTTTCAAATCTGGTCTTCAACAGGCACAACAAAATTTTGGTAAGTGTGTTGAAGGATATGAATGTAGTTTTCAGAGCTCTGACGTTGATGGACGTGTTGGCAAAGTGGATGCAGACAAATTGCAAAAGAAGTCTAACCAGACAGAGATTGACATTTGCACTTCAGGTT
CCAAACGGAAAGGCACAATGCTTGGAGCAGATATAGAGGCCATACTTCCTTCACAATACGGGGATTGCAGTAGCTCAAAAGCTGAGGGGTTGCTTCCAGAAAACAGTATTGCAAGGCATCCTAGTTCCCAGGCTTCAACATTAGAAAACCGACATATGGATACAGGTCTTCATTCTTCCAAAAGATTAAGGAAGACACTC
CACCGTGATGAGAAAATGCTAGATTCCTTTCATTTAGAAAAGGTTGTAGCTCAGTGCAGTGGAGCTAAAGGCAGCAAAGACCCAGAAGATATTCAGTTACATCATAGAGCAGAACTTACAGAGGCATCTCTGGATGCAATGGAATATAATAGAATGACTGTAATTGAAAAGGATTCAAGAGAGCAACATCATGGACTACT
GCATCTGTCAAACCAGGGGGATGTGTCACCATCTTGTCTTGGAGAACATCCTCGTGATAGTGACCATCTAGCAAGCTCTAGTTTGGTCAATTATACTGGTTTGCTCCATACTCCAGTTGAACAAAATATTGTGGGATCCAAGCAGCATTCCGCAGAAAATATAACATTGCAGACAAATGTTGAATATTCTGGTAAGAGTG
CTTCTTCCAGTTCACAAAGGAAGATAGATTTGGCTTCTGTGCTATCCCTGCCTTGGATCAAGCGTTGGTGTCCCTCATATCAGATTAAATCCTCTCTGTTTGAGATGCATTGTGGTTCTGCAGCGACGAGGGAAATCAATCTTAGATGTCATTCAGTGAAAACGTTACCAAGTGCTGCTGCAATGGCCATTGTTGGGATT
GCTTCCCGACAACTGCAGCCTTGTAAGCGGGAAGGGAAGAGATCCTCCAGAGTCTAGATTGCAGTGGGTTTTACGGTGAATGGAACTGCAGAGTAGCAGTAAATTTACAATAATTCAGATTGTCAAAGGGGTTTAGACATAGCTCAGAGAAAATCAGAGTTCTGAACGCTTGTTTCATGTGAGCATATACCAGAGTGTGG
GAGAGGAGACAGGAAGGAGGGGGAATGGGTCAAGACTGAACTTCACGTTGGCACCAAAATGCAATTTTTGGAGGATTGATTGCCCCAATTTTCTGATATTTCAGGTCAGGATCTGAAACAATAAATGTAAAATCCGAATCTCAATATTTGCAGTTGCAGTTATGATGGTACTATTTTACCAGATTTATTATCTCTTCTCT
ATTCGTTTCCTTATGCTTAACCACCAATCTGTCTCAGTTTTCTGGCTGATCTATTCTTTTAGCATTCAATCTAAACAGTCGTATTTAATGAAACCCAAGATGTTTGTTCAAAATTTGAATTATTAATTTATTTGTGCC