sp|Q9LJE5|ECT2_ARATH ----> YTH domain-containing protein ECT2
Intron 1 GTAAGTCTGA ... CATGACTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.22 | 98 | 20 | 36 |
| A2 | 19.46 | 89 | 19 | 24 |
| A3 | 24.26 | 89 | 24 | 33 |
| A4 | 20.25 | 63 | 9 | 23 |
| A5 | 17.54 | 47 | 9 | 11 |
| A6 | 18.72 | 89 | 20 | 21 |
| A7 | 19.88 | 258 | 67 | 61 |
| A8 | 21.07 | 281 | 66 | 84 |
| A9 | 21.05 | 225 | 51 | 69 |
| A10 | 21.31 | 229 | 58 | 66 |
>TRINITY_DN106122_c1_g2_i4 from sample A5 / Example spliced isoformCTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAATCGATCCTGGAACCTCTGAG
AGTTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATTGACGAGCCCAAGCTCCCTG
CAAAAGACGGATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGA
ATGGATGGTCTAGATATGCAGTATCCTGGAGTCGCTCCTGAAAATGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGT
TTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGATCCAACTAAACC
AGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGGAATTTTGACGTTTTGAATGAA
CAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAAAGTCATATAGTGAGGATGA
TGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGTGGTGTGGATTTTGACAAGA
GCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAAAATTTTCAAGAACTATTCA
GTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGGTATGGCTAATTTGAAACGGATCTTTAGTTTAATTTCTCTCAATGATTATTTTTCCCCTACTTCTATTGTCAAAGTCTAGATAAT
>TRINITY_DN106122_c1_g2_i8 from sample A5 / Example unspliced isoform:ATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGGAATTTTGA
CGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAAAGTCAT
ATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAgtaagtctgatgctactatacttttgtcagtgctagttgtattcgttaatt
actgttatattatatcagtagcttttataattgactcgtgcttatctgttgtgcattcaaccctaaccacatcttttgttacatgactcagGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGTGGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTG
TAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAAAATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGT
CAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCAATGTGGTCATTAGTTCTGATGTGAAGGCATCAGGATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAA
CACTGGTTCAGAACATTCGGATGAGAAGACGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCTAGTAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCT
GGTGCGATTAGAAGATTTTAGTTTTTAGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGAACATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACACCATTCAAGTG
TGGTTGTGATTTTGGTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGTCACACTTGAAATTAAACTGTCAAGTTTGTTTGTTCAATGTAGAATTCTTGCATAGTTTTTTGGCGAAAAAAATCTTGGGTCAGAAGCTGACAGAATTGTAGTTCGCTTTGTTCTAGAGTGGATCTGGGTCT
TTTGTTATTCAGAGTGTGATTATTTCCTGCCTTCAAAATGTGGGTGCCAAATAAGCATATAATTATGTTTGAC
Intron 2 GTATCACCTA ... TTGATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.18 | 80 | 21 | 22 |
| A2 | 21.08 | 73 | 15 | 24 |
| A3 | 21.08 | 88 | 19 | 28 |
| A4 | 23.33 | 46 | 14 | 14 |
| A5 | 24.53 | 20 | 9 | 4 |
| A6 | 13.21 | 46 | 7 | 7 |
| A7 | 17.42 | 147 | 31 | 31 |
| A8 | 18.63 | 107 | 17 | 32 |
| A9 | 20.3 | 106 | 22 | 32 |
| A10 | 14.2 | 139 | 22 | 24 |
>TRINITY_DN104885_c0_g1_i3 from sample A4 / Example spliced isoformCGGGGAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGATAATCGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGAC
AGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATTGACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTG
GTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTCTAGATATGCAGTATCCTGTATGT
TCTAAAACAGTTTTTCGATGTTTACTCTTTTGTTATATGTTACTGCTCCAGTCATTTGCATTTTTCGATTTATTGATGGTTTTGTGTTTGCTTATTCATTGCTGGGATCATGACTCGTTTCAAGTGTGTATTGTATTCATTATGTTTCATTTGACTGCAGGGAGTCGCTCCTGAAAATGGATCCATGGTTTACTATACAC
CTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGT
CAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTT
CCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGGAAACCATACTAACGAAAATTGGAATTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTG
GTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAAAGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGG
GCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGTGGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATGATAAAAGA
TATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAAAATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAAGGAAAAGA
AATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCATTGTGGTCATTAGTTCTGATGTGAAGGCATCAGGATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAACACTGGTTCAGAACATTCGGAT
GAGAAGATGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCTAGTAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCTGGTGCGATTAGAAGATTTTAGT
TTTTAGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGAACATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACCATTCAAGTGTGGTTGTGATTTTGGTTAATTTAT
TGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGT
>TRINITY_DN104885_c0_g1_i6 from sample A4 / Example unspliced isoform:CGGGGAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGATAATCGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGAC
AGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATTGACGAGCCCAAGCTCCCTGCAAAAGACGGATCTACAATTGAGACTACAGCTG
GTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTCTAGATATGCAGTATCCTGGAGTC
GCTCCTGAAAATGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCC
CAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGgtatcacctagtaaaatttggaccccaataggaattgtgaatctat
agggatcttggttatcttatataatcttatttaatacttgcatatttcaaaaaattgccatgcgccatataaaaggaatattgaaacactgcccgaatagtatgcattgaaataatgttgaaataacttaaggattcctgaaatggtacgagactagtaaagtgataagttgtacaattttgtgacttcttgccaaattg
tactggactattattaggacgtttcagatgacattttaacgttttagttaaagatttgaactgcttttagatctcatttcttactctttcccatccatctcagctagagaaacgtttttgttgatttcagATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCA
GAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGGAAACCATACTAACGAAAATTGGAATTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACT
AGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAAAGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAG
GCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGTGGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACA
TGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAAAATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATG
AAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCATTGTGGTCATTAGTTCTGATGTGAAGGCATCAGGATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAACACTGGTTCAGA
ACATTCGGATGAGAAGATGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCTAGTAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCTGGTGCGATTAGA
AGATTTTAGTTTTTAGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGAACATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACCATTCAAGTGTGGTTGTGATTTTG
GTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGT
Intron 3 GTTAGTAGAA ... TTCTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.35 | 151 | 41 | 7 |
| A2 | 19.28 | 134 | 32 | 3 |
| A3 | 26.14 | 113 | 40 | 5 |
| A4 | 22.29 | 122 | 35 | 0 |
| A5 | 27.71 | 60 | 23 | 4 |
| A6 | 18.52 | 66 | 15 | 0 |
| A7 | 18.42 | 186 | 42 | 6 |
| A8 | 21.79 | 118.4 | 33 | 2 |
| A9 | 14.97 | 159 | 28 | 2 |
| A10 | 16.45 | 193 | 38 | 0 |
>TRINITY_DN106122_c1_g2_i4 from sample A5 / Example spliced isoformCTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAATCGATCCTGGAACCTCTGAG
AGTTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATTGACGAGCCCAAGCTCCCTG
CAAAAGACGGATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGA
ATGGATGGTCTAGATATGCAGTATCCTGGAGTCGCTCCTGAAAATGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGT
TTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGATCCAACTAAACC
AGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGGAATTTTGACGTTTTGAATGAA
CAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAAAGTCATATAGTGAGGATGA
TGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGTGGTGTGGATTTTGACAAGA
GCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAAAATTTTCAAGAACTATTCA
GTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGGTATGGCTAATTTGAAACGGATCTTTAGTTTAATTTCTCTCAATGATTATTTTTCCCCTACTTCTATTGTCAAAGTCTAGATAAT
>TRINITY_DN106122_c1_g2_i5 from sample A5 / Example unspliced isoform:GCTCAGTTTTATGCCATTTTACTATCATTTTACTTTACTCTAGGGCGTTCTACTGATATTATATTTTTTGATCTGTAATAGCTCCCTGCAAAAGACGGATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTT
CTACCCATCTAATTACTACCATGGTTTCTATTATCCAGgttagtagaagctctatatcattttcaatctgtcattcgaagtatagttcaatttcagaagctttacttgtttattgcataacgaacttgcccaatattagtcttatactgtcattgggcacggagaaccaactttagcgtcagcttgatggactctgaaat
ttcttaacagGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTCTAGATATGCAGTATCCTGTATGTTCTAAAGCAGTTTTCGATGTTTACTCTTTTGTTATATGGTACTGCTCCAGTCATTTGCATTTTTCGATTTATTGATGGTTTTGTGTTTGCTTATTCATTGCTGGGAT
CATGACTCGTTTCAAGTGTGTATTGTATTCATTATGTTTCATTTGACTGCAGGGAGTCGCTCCTGAAAATGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACA
CTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGG
CCGATGACTCAGATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAA
TTGGAATTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTG
TAATAAAGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATG
GTTGGTGGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGAT
GCTGAAAATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCAATGTGGTCATTAGTTCTGATGTGAAGG
CATCAGGATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAACACTGGTTCAGAACATTCGGATGAGAAGACGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCC
TGCTAGTAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCTGGTGCGATTAGAAGATTTTAGTTTTTAGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAA
AGGAACATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACACCATTCAAGTGTGGTTGTGATTTTGGTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGTCACACTTGAAATTAAACTGTCAAGTTTGTTTGTTCAATGTAGAATTCTTGCATAGTTTTTT
GGCGAAAAAAATCTTGGGTCAGAAGCTGACAGAATTGTAGTTCGCTTTGTTCTAGAGTGGATCTGGGTCTTTTGTTATTCAGAGTGTGATTATTTCCTGCCTTCAAAATGTGGGTGCCAAATAAGCATATAATTATGTTTGAC
Intron 4 GTTAGTAGAA ... TTCTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.87 | 147 | 41 | 4.9 |
| A2 | 19.64 | 131.3 | 32 | 2 |
| A3 | 25.98 | 111.6 | 39.1 | 2.9 |
| A4 | 22.55 | 120.3 | 35 | 0 |
| A5 | 28.19 | 58.7 | 23 | 2.7 |
| A6 | 19.07 | 64 | 15 | 0 |
| A7 | 18.74 | 182.4 | 42 | 5.1 |
| A8 | 22.25 | 114.6 | 32.6 | 2 |
| A9 | 15.33 | 155.1 | 28 | 1.1 |
| A10 | 16.88 | 187.9 | 38 | 0 |
>TRINITY_DN128265_c4_g1_i1 from sample A1 / Example spliced isoformTGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAAT
CGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATT
GACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGACGA
TCAAGCTCGTTATGTAGGAATGGATGGTCTAGATATGCAGTATCCTGGAGTCGCTCCTGAAAATGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTC
CTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATG
ACTCAGATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGGAA
TTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAA
AGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGT
GGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAA
AATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCAATGTGGTCATTAGTTCTGATGTGAAGGCATCAG
GATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAACACTGGTTCAGAACATTCGGATGAGAAGACGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCTAG
TAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCTGGTGCGATTAGAAGATTTTAGTTTTTGGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGAAC
ATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACACCATTCAAGTGTGGTTGTGATTTTGGTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGTCACACTTGAAATTAAACTGTCAAGTTTGTTTGTTCAATGTAGAATTCTTGCATAGTTTTTTGGCGAA
AAAAATCTTGGGTCAGAAGCTGACAGAATTGTAGTTCGCTTTGTTCTAGAGTGGATCTGGGTCTTTTGTTATTCAGAGTGTGATTATTTCCTGCCTTCAAAATGTGGGTGCCAAATAAGCATATAATTATGTTTGACCTCTGATCTTTGAGCTTCAATAGCGGATCGAAATTAATTTAAGCATCATTGCAAAGCTGTTGG
ATATATTTTCGGAAACTAGCTTCAGTTTTGCAGCAGAACTTCAAAATCAATATCACTACATTGCTATGTGAAAACTAGCATCTGTTTTCTTATTTGGCATATACTACAAGGTGCTGGAAACCTTAGTCTGGATATGAAATTGCATCTCCGATTCAAATGAATTAGTTTTATTTAATTCCATGTTTTTCAAGTAGATTGGG
GAGACAAATAAGAGAGTATATTAAAG
>TRINITY_DN128265_c4_g1_i5 from sample A1 / Example unspliced isoform:TGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAAT
CGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATT
GACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGgttagtagaagctctatatcattttcaatct
gtcattcgaagtatagttcaatttcagaagctttagtttattgcataacgaacttgcccaatattagtcttatactgtcattgggcacggagaaccaactttagcgtcagcttgatggactctgaaatttcttaacagGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTCTA
GATATGCAGTATCCTGTATGTTCTAAAGCAGTTTTCGATGTTTACTCTTTTGTTATATGTTACTGCTCCAGTCATTTGCATTTTTCGATTTATTGATGGTTTTGTGTTTGCTTATTCATTGCTGGGATCATGACTCGTTTCAAGTGTGTATTGTATTCATTATGTTTCATTTGACTGCAGGGAGTCGCTCCTGAAAATGG
ATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGC
CAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGGTATCACCTAGTAAAATTTGGACCCCAATAGGAATTGTGAATCTATAGGGATCTTGGTTA
TCTTATATAATCTTTTTTAATACTTGCATATTTCAAAAAATTGCCATGCGCGCCATATAAAAGGAATATTGAAACACTGCCCGAATAGTATGCATTGAAATAATGTTGAAATAACTTAAGGATTCCTG
Intron 5 GTGAGTAATT ... CTGTTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.23 | 30 | 3.4 | 45.4 |
| A2 | 66.43 | 17 | 3.6 | 33.7 |
| A3 | 61.99 | 21 | 1.3 | 34.3 |
| A4 | 62.03 | 25 | 2.9 | 40.9 |
| A5 | 84.55 | 3 | 4.4 | 16.4 |
| A6 | 66.67 | 7 | 0 | 14 |
| A7 | 58.5 | 23 | 0.4 | 32.4 |
| A8 | 54.29 | 16 | 0 | 19 |
| A9 | 54.41 | 31 | 0 | 37 |
| A10 | 60.84 | 25 | 1.9 | 38.9 |
>TRINITY_DN128265_c4_g1_i3 from sample A1 / Example spliced isoformTGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAATCGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTA
GTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATTGACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCC
GCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTCTAGATATGCAGTATCCTGGAGTCGCTCCTGAAAATGGATCCATGGTTTA
CTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTG
CCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGA
AAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGGAATTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAG
AAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAAAGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGC
TAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGTGGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATG
ATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAAAATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAA
GGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCAATGTGGTCATTAGTTCTGATGTGAAGGCATCAGGATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAACACTGGTTCAGAAC
ATTCGGATGAGAAGACGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCTAGTAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCTGGTGCGATTAGAAG
ATTTTAGTTTTTGGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGAACATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACACCATTCAAGTGTGGTTGTGATTTTG
GTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGTCACACTTGAAATTAAACTGTCAAGTTTGTTTGTTCAATGTAGAATTCTTGCATAGTTTTTTGGCGAAAAAAATCTTGGGTCAGAAGCTGACAGAATTGTAGTTCGCTTTGTTCTAGAGTGGATCTGGGTCTTTTGTTATTCAGAG
TGTGATTATTTCCTGCCTTCAAAATGTGGGTGCCAAATAAGCATATAATTATGTTTGACCTCTGATCTTTGAGCTTCAATAGCGGATCGAAATTAATTTAAGCATCATTGCAAAGCTGTTGGATATATTTTCGGAAACTAGCTTCAGTTTTGCAGCAGAACTTCAAAATCAATATCACTACATTGCTATGTGAAAACTAG
CATCTGTTTTCTTATTTGGCATATACTACAAGGTGCTGGAAACCTTAGTCTGGATATGAAATTGCATCTCCGATTCAAATGAATTAGTTTTATTTAATTCCATGTTTTTCAAGTAGATTGGGGAGACAAATAAGAGAGTATATTAAAG
>TRINITY_DN128265_c4_g1_i6 from sample A1 / Example unspliced isoform:TGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTgtgagtaatttcaaatcctaaattcgtctatatgagaatcgaatctaagggttttgacattcaacctcctgtttttagGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAAT
CGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACGTATCCTTTTTATTTTCAGCCGCTCTTGTTTTGTTTATTTTTGGTGTTTTCCA
CTTGCAGATCATCAGCTGTTCAATCTTCACGGGTTAGCATGTAGGTCGCAGTCTATGTTTTTTTTTTTTTTAATAATAATTTTTTTGAAAAAGTTGGGAGAAATTTAGGTTTGTTTCTGCTAGCTGGTGTTGCATATTTGAGGAACGGGTATTTGTAGCTATGAATCAAGTTTTTGGTAAAGGTTTTAGTATTTTTGTTG
ACCGCCGGGGATGAGATCTGTGCTTATTTGGATGCATAAGTCTGAATGGTTTGATGCGCCGCTTTTATTTTCTCTTTTCTTCGACATTCCTAATGGTTGCTGAACTTTTGGATCGATAGTTAAATGTTACTCCTTAGCCGTTGCTTTCTTCAGAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGAC
TCAATTGACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGG
Intron 6 GTATGTTCTA ... TTGACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.08 | 113 | 28.6 | 32 |
| A2 | 15.91 | 74 | 21.2 | 14 |
| A3 | 16.41 | 96.8 | 21 | 19 |
| A4 | 12.4 | 63.6 | 19.4 | 9 |
| A5 | 24.02 | 34.8 | 9.4 | 11 |
| A6 | 14.42 | 59.4 | 12.6 | 10 |
| A7 | 7.2 | 141.8 | 34 | 11 |
| A8 | 11.45 | 92.8 | 13.2 | 12 |
| A9 | 12.11 | 152.4 | 37.8 | 21 |
| A10 | 15.24 | 161.2 | 34.6 | 29 |
>TRINITY_DN111644_c0_g1_i3 from sample A3 / Example spliced isoformAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGATAATCGAT
CCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACGTATCCTTTTTATTTTCAGCCGCTCTTGTTTTGTTTATTTTTGGTGTTTTCCACTTG
CAGATCATCAGCTGTTCAATCTTCACGGGTTAGCATGTAGGTCGCAGTCTATGTTTTTTTTTTTTTTAATAATAATTTTTTTGAAAAAGTTGGGAGAAATTTAGGTTTGTTTCTGCTAGCTGGTGTTGCATATTTGAGGAACGGGTATTTGTAGCTATGAATCAAGTTTTTGGTAAAGGTTTTAGTATTTTTGTTGACCG
CCGGGGATGAGATCTGTGCTTATTTGGATGCATAAGTCTGAATGGTTTGATGCGCCGCTTTTATTTTCTCTTTTCTTCGACATTCCTAATGGTTGCTGAACTTTTGGATCGATAGTTAAATGTTACTCCTTAGCCGTTGCTTTCTTCAGAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAA
TTGACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGAC
GATCAAGCTCGTTATGTAGGAATGGATGGTCTAGATATGCAGTATCCTGGAGTCGCTCCTGAAAATGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGG
TCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGA
TGACTCAGATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGG
AATTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAAT
AAAGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTG
GTGGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTG
AAAATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCATTGTGGTCATTAGTTCTGATGTGAAGGCATC
AGGATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAACACTGGTTCAGAACATTCGGATGAGAAGACGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCT
AGTAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCTGGTGCGATTAGAAGATTTTAGTTTTTGGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGA
ACATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACACCATTCAAGTGTGGTTGTGATTTTGGTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGTTACACTTGAAATTAAACTGTCAAGTTTGTTTGTTCAATGTAGAATTCTTGCATAGTTTTTTGGCG
AAAAAAATCTTGGGTCAGAAGCTGACAGAATTGTAGTTCGCTTTGTTCTAGAGTGGATCTGGGTCTTTTGTTATTCAGAGTGTGATTATTTCCTGCCTTCAAAATGTGGGTGCCAAATAAGCATATAATTATGTTTGACCTCTGATCTTTGAGCTTCAATAGCGGATCGAAATTAATTTAAGCATCATTGCAAAGCTGTT
GGATATATTTTCGGAAACTAGCTTCAGTTTTGCAGCAGAACTTCAAAATCAATATCACTACATTGCTATGTGAAAACTAGCATCTGTTTTCTTATTTGGCATATACTACAAGGTGCTGGAAACCTTAGTCTGGATATGAAATTGCATCTCCGATTCAAATGAATTAGTTTTATTTAATTCCATGTTTTTCAAGTAGATTG
GGGAGACAAATAAGAGAGTATAATAAAGTCAAAGGGGG
>TRINITY_DN111644_c0_g1_i2 from sample A3 / Example unspliced isoform:AAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGATAATCGAT
CCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACGTATCCTTTTTATTTTCAGCCGCTCTTGTTTTGTTTATTTTTGGTGTTTTCCACTTG
CAGATCATCAGCTGTTCAATCTTCACGGGTTAGCATGTAGGTCGCAGTCTATGTTTTTTTTTTTTTTAATAATAATTTTTTTGAAAAAGTTGGGAGAAATTTAGGTTTGTTTCTGCTAGCTGGTGTTGCATATTTGAGGAACGGGTATTTGTAGCTATGAATCAAGTTTTTGGTAAAGGTTTTAGTATTTTTGTTGACCG
CCGGGGATGAGATCTGTGCTTATTTGGATGCATAAGTCTGAATGGTTTGATGCGCCGCTTTTATTTTCTCTTTTCTTCGACATTCCTAATGGTTGCTGAACTTTTGGATCGATAGTTAAATGTTACTCCTTAGCCGTTGCTTTCTTCAGAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAA
TTGACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGTTAGTAGAAGCTCTATATCATTTTCAAT
CTGTCATTCGAAGTATAGTTCAATTTCAGAAGCTTTAGTTTATTGCATAACGAACTTGCCCAATATTAGTCTTATACTGTCATTGGGCACGGAGAACCAACTTTAGCGTCAGCTTGATGGACTCTGAAATTTCTTAACAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTC
TAGATATGCAGTATCCTgtatgttctaaaacagtttttcgatgtttactcttttgttatatgttactgctccagtcatttgcatttttcgatttattgatggttttgtgtttgcttattcattgctgggatcatgactcgtttcaagtgtgtattgtattcattatgtttcatttgactgcagGGAGTCGCTCCTGAAAA
TGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGG
AGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGAT
TCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGGAATTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTT
ATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAAAGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCA
ATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGTGGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCT
GTAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAAAATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCG
TCAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCATTGTGGTCATTAGTTCTGATGTGAAGGCATCAGGATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGA
ACACTGGTTCAGAACATTCGGATGAGAAGACGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCTAGTAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATC
TGGTGCGATTAGAAGATTTTAGTTTTTGGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGAACATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACACCATTCAAGT
GTGGTTGTGATTTTGGTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGTTACACTTGAAATTAAACTGTCAAGTTTGTTTGTTCAATGTAGAATTCTTGCATAGTTTTTTGGCGAAAAAAATCTTGGGTCAGAAGCTGACAGAATTGTAGTTCGCTTTGTTCTAGAGTGGATCTGGGTC
TTTTGTTATTCAGAGTGTGATTATTTCCTGCCTTCAAAATGTGGGTGCCAAATAAGCATATAATTATGTTTGACCTCTGATCTTTGAGCTTCAATAGCGGATCGAAATTAATTTAAGCATCATTGCAAAGCTGTTGGATATATTTTCGGAAACTAGCTTCAGTTTTGCAGCAGAACTTCAAAATCAATATCACTACATTG
CTATGTGAAAACTAGCATCTGTTTTCTTATTTGGCATATACTACAAGGTGCTGGAAACCTTAGTCTGGATATGAAATTGCATCTCCGATTCAAATGAATTAGTTTTATTTAATTCCATGTTTTTCAAGTAGATTGGGGAGACAAATAAGAGAGTATAATAAAGTCAAAGGGGG
Intron 7 GTATCCTTTT ... CTTACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.47 | 164 | 39.1 | 38.3 |
| A2 | 20.77 | 165 | 32 | 44.8 |
| A3 | 22.66 | 206 | 39.3 | 62 |
| A4 | 17.97 | 130 | 21.5 | 29.5 |
| A5 | 23.84 | 78 | 18.9 | 25.3 |
| A6 | 22.93 | 112 | 17.8 | 34.8 |
| A7 | 22.8 | 315 | 52.3 | 96.8 |
| A8 | 21.72 | 166 | 25.6 | 48 |
| A9 | 16.82 | 245 | 41.3 | 51.1 |
| A10 | 18.88 | 294 | 45.7 | 70.9 |
>TRINITY_DN128265_c4_g1_i5 from sample A1 / Example spliced isoformTGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAAT
CGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATT
GACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGTTAGTAGAAGCTCTATATCATTTTCAATCT
GTCATTCGAAGTATAGTTCAATTTCAGAAGCTTTAGTTTATTGCATAACGAACTTGCCCAATATTAGTCTTATACTGTCATTGGGCACGGAGAACCAACTTTAGCGTCAGCTTGATGGACTCTGAAATTTCTTAACAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTCTA
GATATGCAGTATCCTGTATGTTCTAAAGCAGTTTTCGATGTTTACTCTTTTGTTATATGTTACTGCTCCAGTCATTTGCATTTTTCGATTTATTGATGGTTTTGTGTTTGCTTATTCATTGCTGGGATCATGACTCGTTTCAAGTGTGTATTGTATTCATTATGTTTCATTTGACTGCAGGGAGTCGCTCCTGAAAATGG
ATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGC
CAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGGTATCACCTAGTAAAATTTGGACCCCAATAGGAATTGTGAATCTATAGGGATCTTGGTTA
TCTTATATAATCTTTTTTAATACTTGCATATTTCAAAAAATTGCCATGCGCGCCATATAAAAGGAATATTGAAACACTGCCCGAATAGTATGCATTGAAATAATGTTGAAATAACTTAAGGATTCCTG
>TRINITY_DN128265_c4_g1_i6 from sample A1 / Example unspliced isoform:TGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAAT
CGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACgtatcctttttattttcagccgctcttgttttgtttatttttggtgttttcca
cttgcagatcatcagctgttcaatcttcacgggttagcatgtaggtcgcagtctatgttttttttttttttaataataatttttttgaaaaagttgggagaaatttaggtttgtttctgctagctggtgttgcatatttgaggaacgggtatttgtagctatgaatcaagtttttggtaaaggttttagtatttttgttg
accgccggggatgagatctgtgcttatttggatgcataagtctgaatggtttgatgcgccgcttttattttctcttttcttcgacattcctaatggttgctgaacttttggatcgatagttaaatgttactccttagccgttgctttcttcagAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGAC
TCAATTGACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGG
Intron 8 GTATGTTCTA ... TTGACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.13 | 112.7 | 18.3 | 32 |
| A2 | 15.91 | 74 | 12.7 | 14 |
| A3 | 16.4 | 96.8 | 14.7 | 19 |
| A4 | 12.41 | 63.5 | 11.3 | 9 |
| A5 | 24 | 34.8 | 7 | 11 |
| A6 | 14.4 | 59.5 | 7.7 | 10 |
| A7 | 7.21 | 141.7 | 22.3 | 11 |
| A8 | 11.47 | 92.7 | 8 | 12 |
| A9 | 12.12 | 152.3 | 22.3 | 21 |
| A10 | 15.25 | 161.2 | 22.3 | 29 |
>TRINITY_DN128265_c4_g1_i1 from sample A1 / Example spliced isoformTGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAAT
CGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATT
GACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGGCATGAGACAAATGCAAAAGAATGGGACGA
TCAAGCTCGTTATGTAGGAATGGATGGTCTAGATATGCAGTATCCTGGAGTCGCTCCTGAAAATGGATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTC
CTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGCCAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATG
ACTCAGATCCAACTAAACCAGCAGCAGGGCTTGGGTGCTCGAGGTGCAATGCTACCTAAGGATTCTATGCCATTCAGAAAAAATTTCCCAGGATTCAACCAGGGGAAAGTGATGATGCCATTTAACAATAACATGGTTTTCAAGCCCAACTCACGTTTGAGGGGAAAGGCTTATGCAAACCATACTAACGAAAATTGGAA
TTTTGACGTTTTGAATGAACAAAACCGTGGTCCTCGAACTAATAGACCAAAAGTCCATCAGTTATCTTCTGAAACTAGAAATTCTGGTGGCGAAGATGTGGTGGAAAATGGTGAGATAAATGGAATTGTGATAAATAGAGAACAATATAACCGTGCAGATTTTTCTATCGAGTATGATGATGCAAAGTTTTTTGTAATAA
AGTCATATAGTGAGGATGATGTTCATCAGAGCATCAAATACAGTGTTTGGGCAAGTACTCCCAATGGCAATAAAAGGCTAGATGGGGCACACCAAGAAGCTCAGAAGATTTCTGGTGAAAACAATAAGGGCTGTCCAGTGTTTTTATTTTTCTCAGTTAATGCAAGTGGCCAATTCTGTGGTGTGGCCGAGATGGTTGGT
GGTGTGGATTTTGACAAGAGCATGGATTTCTGGCAGCAAGACAAATGGAGTGGCTTTTTCCCTGTAAAGTGGCACATGATAAAAGATATACCAAATTCTCAGTTTCGCCAAATTATCTTGCAAAACAATGACAACAAGCCTGTGACCAACAGTAGAGACACACAAGAGATCAAATTTCAGCAGGGTATAGAGATGCTGAA
AATTTTCAAGAACTATTCAGTGAAAACATCAATACTAGATGATTTCACATTCTATGAAGGTCGTCAGAAAGTTATGAAGGAAAAGAAATTGAGGCAACAAGCTCAGCAGCAGCAACAGCTTACCATTCCTGAAGGCACACATGTTCAGAAGTTAGGTGAAGATGGCAATGTGGTCATTAGTTCTGATGTGAAGGCATCAG
GATTGAGGTTGCCAGTAACCAGTGAAAATGGTAATCAACATTCAGACTCAAATGAGATTGAGAACACTGGTTCAGAACATTCGGATGAGAAGACGGAGGAAATAGTTCAACCTAAGGGGGTTGACACCAAGAAATATGATTCAGAAATAATCCATGTTGATAGCCCAGGAGTTTTAATTGTTGGTTCTGTAGCCTGCTAG
TAAAATACTAGAAAGGCTTTAGATCTCCCTTCTGGAATCATGTGTAATCAAAGTTATCATATCTGGTGCGATTAGAAGATTTTAGTTTTTGGTTAATTGAGTTGTTAGGGTCACCTGATCCAGTGAAATCAGTTACATTTGCAGTGTGCCCGTTGTACCATAGTATCTGCTTTAGGTAACAGGTACAAGGCAAAAGGAAC
ATCTCCTTGAGGGTTGTTGCTACTAGTGATTTGTAATTGTAGGGAAAACCACACCATTCAAGTGTGGTTGTGATTTTGGTTAATTTATTGAAAACAACTTACAAGTGTTCGCAATTCTTAAATATGCTCCTGTCACACTTGAAATTAAACTGTCAAGTTTGTTTGTTCAATGTAGAATTCTTGCATAGTTTTTTGGCGAA
AAAAATCTTGGGTCAGAAGCTGACAGAATTGTAGTTCGCTTTGTTCTAGAGTGGATCTGGGTCTTTTGTTATTCAGAGTGTGATTATTTCCTGCCTTCAAAATGTGGGTGCCAAATAAGCATATAATTATGTTTGACCTCTGATCTTTGAGCTTCAATAGCGGATCGAAATTAATTTAAGCATCATTGCAAAGCTGTTGG
ATATATTTTCGGAAACTAGCTTCAGTTTTGCAGCAGAACTTCAAAATCAATATCACTACATTGCTATGTGAAAACTAGCATCTGTTTTCTTATTTGGCATATACTACAAGGTGCTGGAAACCTTAGTCTGGATATGAAATTGCATCTCCGATTCAAATGAATTAGTTTTATTTAATTCCATGTTTTTCAAGTAGATTGGG
GAGACAAATAAGAGAGTATATTAAAG
>TRINITY_DN128265_c4_g1_i5 from sample A1 / Example unspliced isoform:TGGAAAATGGTTGCGGAGACTCGAACATTAAAATATTACTACATTCCCGTTTTTCTTAAATACATTTGTGAGTAATTTCAAATCCTAAATTCGTCTATATGAGAATCGAATCTAAGGGTTTTGACATTCAACCTCCTGTTTTTAGGGTTTTCGAACCAGCTCGCACAGTGCTAGGTTTTTATAGCCGAGGGGTCGAGAAT
CGATCCTGGAACCTCTGAGAGGTGAATCGTGGTCGGCGACCTGTGCTGCGACAGGGGAGCAGGAGCGGGAGCGGTCTAGTTTTTGTCTAGAGTTGAAGAAGGTGAAGGAGGAAGAAGACATGGCTGTTGCAGTCCCGGCGAAACAACAGGTGGCAGAATTAATGGAAAATCTAAAGATTGATGACCGGACAGACTCAATT
GACGAGCCCAAGCTCCCTGCAAAAGACGAATCTACAATTGAGACTACAGCTGGTGTAGCGCATTCTACTACTGAGTCCGCCGGAGCAAAGGAGAATAAGCCACAGTTGGATACAGTGGAGCAACGGCCTTTCTACCCATCTAATTACTACCATGGTTTCTATTATCCAGGTTAGTAGAAGCTCTATATCATTTTCAATCT
GTCATTCGAAGTATAGTTCAATTTCAGAAGCTTTAGTTTATTGCATAACGAACTTGCCCAATATTAGTCTTATACTGTCATTGGGCACGGAGAACCAACTTTAGCGTCAGCTTGATGGACTCTGAAATTTCTTAACAGGGCATGAGACAAATGCAAAAGAATGGGACGATCAAGCTCGTTATGTAGGAATGGATGGTCTA
GATATGCAGTATCCTgtatgttctaaagcagttttcgatgtttactcttttgttatatgttactgctccagtcatttgcatttttcgatttattgatggttttgtgtttgcttattcattgctgggatcatgactcgtttcaagtgtgtattgtattcattatgtttcatttgactgcagGGAGTCGCTCCTGAAAATGG
ATCCATGGTTTACTATACACCTGGGTATGGCTACACTCCTCAAACTCCCTACAACCCATATAATCCTTATATTCCTGGAGCTATGGTTGGAACTGATAGTCAGTTTCTTGGTCAACGGCCCTATTACACTGGTCCTCCCTATCAGCACCCGGTTTCTTCCGGTTATTTCCAACCTCCAGTGCACCCCAGCTCCCAGGAGC
CAGGATCAATTGCCGCGGGTCAAGCAAATGCAAATAGCATTGCTGGTACTGCACCTCATAGGCTGGCTGAAAAGGATGGCAAGAAAGGAACTGTTCATTCTGGTGGCGTTCGGTCCCAGAATTTCAGGCCGATGACTCAGGTATCACCTAGTAAAATTTGGACCCCAATAGGAATTGTGAATCTATAGGGATCTTGGTTA
TCTTATATAATCTTTTTTAATACTTGCATATTTCAAAAAATTGCCATGCGCGCCATATAAAAGGAATATTGAAACACTGCCCGAATAGTATGCATTGAAATAATGTTGAAATAACTTAAGGATTCCTG