sp|P29344|RR1_SPIOL ----> Small ribosomal subunit protein bS1c
Intron 1 GTAAACACCA ... TTTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 30 | 15 | 9 |
| A2 | 50 | 15 | 15 | 2 |
| A3 | 20.69 | 23 | 6 | 3 |
| A4 | 33.33 | 18 | 9 | 2 |
| A5 | 22.22 | 7 | 2 | 0 |
| A6 | 28.79 | 94 | 38 | 3 |
| A7 | 32.31 | 122.3 | 58.4 | 13 |
| A8 | 32.95 | 173 | 85 | 28 |
| A9 | 29.82 | 95 | 40.4 | 14 |
| A10 | 35.43 | 82 | 45 | 8 |
>TRINITY_DN115316_c3_g2_i10 from sample A2 / Example spliced isoformCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGACTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGTCCTGG
AGAGGAAATCAAGTCCTGATGTTACGTACCTTGAAATTGAGAAATTCATCAAATCTGTATCAAGTAACAGTAAAGGAAAGAGGAAATCTAATGGTCTCATTCGCCAAGTAATGATAAGGAAAGGAAAAAGAGATATCTCCCCCATTGAGCCAGTTAGGCCTGGTACCATTGCAAAAGGACTTGACATGAAATTTGATTCC
AAGGATGCTACTCGTGAAGTTTTACTGCGAAGATCATGTTCTATGCAAAAACAGGCACATGATTTTCATGGGTTTGCACCTCAGCCTACGACACTACAGTTTCCTTCAAAGAAGAATGAGGTCTCAGTTAAGACAAGCTTAGAAGATACTGTCTTGCTGCGAAGACCTGAAGCCATAAGGATTGACTATAATTTGAGAAA
GATCCTCGGTGACAGAAATGCTAAGGAAGTTGTAACTGAAGATTCATTGTTGTCAAAAACTGATACCGCGAACACTTATGCTGCTGCAGAGAAAAGAGGAGAAGCGAAAAACGAGAACAGAATATCAATGAACAGGCCAACTATGCCCATGAATCCAATGGTATCGACATCTTATGAAATGGATCCCAGAAAATTGCATG
GAAGAACAGAAGATCAAAATTGCCTTCAAAGAAGTGTCTCAGAGAACAAGGAAGATGCCAGAAGTTTTCCTTCCAGTGAGCCTCAAACAATGTGTGGGTCTGTCCCATCATCAGCTAAATCTGATAAGGTGTTAAAGACAGTCATACATATACCAGACCTTATAGCTATCTCTCCGGCAAAGAGGGATAGCTGGGACATA
AAAGATCAGTTGCAAGACTATAAAGTAGCAACAGAAATAAAAACAGAAGCACAACCCACACAATGGACAACTTATGGACCAATTCACATTGAATCTGAATCTGTGAAGCCTGAGACTGTTGTTTTGAAGGATTTTCCAATTCACCATCTTTCTGAAGCAATGGCTGTCAAAAGGAAATCTCCTGAGGACCTAGATTCGCT
TGGACATGCTTTCATTAATGAAATGTCAGTGTGGTTTAGTAATAATAATGAAGACGTACCCCATACAGGTTCAACTCTGCCTTCTTGCAGACAAGCTTCGGAAAAAACGACAGACATCAATGATGGACCTGAAAATGCTAATGATTTATATGTGACTGAAGCTGCCTCAAACCAAACACAGTACCAGACTAGCACAATCA
ATTCTGTGCTTCAGAAGTCATTATATCAAACAGATTCCATCGCTGATGGTATACATGCCATTATATTTGAAAGGAATGCACAAATTTCACATCAGGAAAATGGAATCTTATTACAAGCTGTACAGGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTT
AGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATT
GACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGA
AATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTC
GGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGA
ATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGT
CTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGA
GTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTT
TCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAG
>TRINITY_DN115316_c3_g2_i9 from sample A2 / Example unspliced isoform:CAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGACTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGTCCTGG
AGAGGAAATCAAGTCCTGATGTTACGTACCTTGAAATTGAGAAATTCATCAAATCTGTATCAAGTAACAGTAAAGGAAAGAGGAAATCTAATGGTCTCATTCGCCAAGTAATGATAAGGAAAGGAAAAAGAGATATCTCCCCCATTGAGCCAGTTAGGCCTGGTACCATTGCAAAAGGACTTGACATGAAATTTGATTCC
AAGGATGCTACTCGTGAAGTTTTACTGCGAAGATCATGTTCTATGCAAAAACAGGCACATGATTTTCATGGGTTTGCACCTCAGCCTACGACACTACAGTTTCCTTCAAAGAAGAATGAGGTCTCAGTTAAGACAAGCTTAGAAGATACTGTCTTGCTGCGAAGACCTGAAGCCATAAGGATTGACTATAATTTGAGAAA
GATCCTCGGTGACAGAAATGCTAAGGAAGTTGTAACTGAAGATTCATTGTTGTCAAAAACTGATACCGCGAACACTTATGCTGCTGCAGAGAAAAGAGGAGAAGCGAAAAACGAGAACAGAATATCAATGAACAGGCCAACTATGCCCATGAATCCAATGGTATCGACATCTTATGAAATGGATCCCAGAAAATTGCATG
GAAGAACAGAAGATCAAAATTGCCTTCAAAGAAGTGTCTCAGAGAACAAGGAAGATGCCAGAAGTTTTCCTTCCAGTGAGCCTCAAACAATGTGTGGGTCTGTCCCATCATCAGCTAAATCTGATAAGGTGTTAAAGACAGTCATACATATACCAGACCTTATAGCTATCTCTCCGGCAAAGAGGGATAGCTGGGACATA
AAAGATCAGTTGCAAGACTATAAAGTAGCAACAGAAATAAAAACAGAAGCACAACCCACACAATGGACAACTTATGGACCAATTCACATTGAATCTGAATCTGTGAAGCCTGAGACTGTTGTTTTGAAGGATTTTCCAATTCACCATCTTTCTGAAGCAATGGCTGTCAAAAGGAAATCTCCTGAGGACCTAGATTCGCT
TGGACATGCTTTCATTAATGAAATGTCAGTGTGGTTTAGTAATAATAATGAAGACGTACCCCATACAGGTTCAACTCTGCCTTCTTGCAGACAAGCTTCGGAAAAAACGACAGACATCAATGATGGACCTGAAAATGCTAATGAGAAGAGTTTATCTCAACCAAATAACTCCATTCCATCTGTTAGTTTATATGTGACTG
AAGCTGCCTCAAACCAAACACAGTACCAGACTAGCACAATCAATTCTGTGCTTCAGAAGTCATTATATCAAACAGATTCCATCGCTGATGGTATACATGCCATTATATTTGAAAGGAATGCACAAATTTCACATCAGGAAAATGGAATCTTATTACAAGCTGTACAGGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAG
TCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGG
ATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGA
CATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTG
TCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGA
ATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGgtaaacacca
aaaagatatattgtattttttttcaataaaataacttgtgatttactcgtgctgaagcctgaaatacaagttttttcacagATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGC
AATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTC
AGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAG
Intron 2 GTATAAATAT ... GTTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.66 | 34 | 7 | 19 |
| A2 | 21.57 | 20 | 1 | 10 |
| A3 | 24 | 19 | 7 | 5 |
| A4 | 33.33 | 13 | 7 | 6 |
| A5 | 21.43 | 11 | 0 | 6 |
| A6 | 33.33 | 4 | 0 | 4 |
| A7 | 24.73 | 35 | 18 | 5 |
| A8 | 25.58 | 16 | 6 | 5 |
| A9 | 17.95 | 16 | 2 | 5 |
| A10 | 26.67 | 11 | 4 | 4 |
>TRINITY_DN124309_c0_g1_i5 from sample A1 / Example spliced isoformCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGTCCTGG
AGAGGAAATCAAGTCCTGATGTTACGTACCTTGAAATTGAGAAATTCATCAAATCTGTATCAAGTAACAGTAAAGGAAAGAGGAAATCTAATGGTCTCATTCGCCAAGTAATGATAAGGAAAGGAAAAAGAGATATCTCCCCCATTGAGCCAGTTAGGCCTGGTACCATTGCAAAAGGACTTGACATGAAATTTGATTCC
AAGGATGCTACTCGTGAAGTTTTACTGCGAAGATCATGTTCTATGCAAAAACAGGCACATGATTTTCATGGGTTTGCACCTCAGCCTACGACACTACAGTTTCCTTCAAAGAAGAATGAGGTCTCAGTTAAGACAAGCTTAGAAGATACTGTCTTGCTGCGAAGACCTGAAGCCATAAGGATTGACTATAATTTGAGAAA
GATCCTCGGTGACAGAAATGCTAAGGAAGTTGTAACTGAAGATTCATTGTTGTCAAAAACTGATACCGCGAACACTTATGCTGCTGCAGAGAAAAGAGGAGAAGCGAAAAACGAGAACAGAATATCAATGAACAGGCCAACTATGCCCATGAATCCAATGGTATCGACATCTTATGAAATGGATCCCAGAAAATTGCATG
GAAGAACAGAAGATCAAAATTGCCTTCAAAGAAGTGTCTCAGAGAACAAGGAAGATGCCAGAAGTTTTCCTTCCAGTGAGCCTCAAACAATGTGTGGGTCTGTCCCATCATCAGCTAAATCTGATAAGGTGTTAAAGACAGTCATACATATACCAGACCTTATAGCTATCTCTCCGGCAAAGAGGGATAGCTGGGACATA
AAAGATCAGTTGCAAGACTATAAAGTAGCAACAGAAATAAAAACAGAAGCACAACCCACACAATGGACAACTTATGGACCAATTCACATTGAATCTGAATCTGTGAAGCCTGAGACTGTTGTTTTGAAGGATTTTCCAATTCACCATCTTTCTGAAGCAATGGCTGTCAAAAGGAAATCTCCTGAGGACCTAGATTCGCT
TGGACATGCTTTCATTAATGAAATGTCAGTGTGGTTTAGTAATAATAATGAAGACGTACCCCATACAGGTTCAACTCTGCCTTCTTGCAGACAAGCTTCGGAAAAAACGACAGACATCAATGATGGACCTGAAAATGCTAATGAGAAGAGTTTATCTCAACCAAATAACTCCATTCCATCTGTTAGTTTATATGTGACTG
AAGCTGCCTCAAACCAAACACAGTACCAGACTAGCACAATCAATTCTGTGCTTCAGAAGTCATTATATCAAACAGATTCCATCGCTGATGGTATACATGCCATTATATTTGAAAGGAATGCACAAATTTCACATCAGGAAAATGGAATCTTATTACAAGCTGTACAGGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAG
TCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGG
ATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGA
CATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTG
TCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGA
ATTTAAAAATGAGTTCCCACTGCATTTTAAACTACCTCGCTGCCTTTCATATGATGCTTCCTTACGTAGCATGCCTTTGGATTCATTCTTATATCACCTCGTTTCGCTTCCTCCCTCCCTTTTCAATCACAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGG
CCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAAT
AGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTC
TATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAA
TTACCAATGTTATTTTCATTTTCTT
>TRINITY_DN124309_c0_g1_i8 from sample A1 / Example unspliced isoform:CAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGTCCTGG
AGAGGAAATCAAGTCCTGATGTTACGTACCTTGAAATTGAGAAATTCATCAAATCTGTATCAAGTAACAGTAAAGGAAAGAGGAAATCTAATGGTCTCATTCGCCAAGTAATGATAAGGAAAGGAAAAAGAGATATCTCCCCCATTGAGCCAGTTAGGCCTGGTACCATTGCAAAAGGACTTGACATGAAATTTGATTCC
AAGGATGCTACTCGTGAAGTTTTACTGCGAAGATCATGTTCTATGCAAAAACAGGCACATGATTTTCATGGGTTTGCACCTCAGCCTACGACACTACAGTTTCCTTCAAAGAAGAATGAGGTCTCAGTTAAGACAAGCTTAGAAGATACTGTCTTGCTGCGAAGACCTGAAGCCATAAGGATTGACTATAATTTGAGAAA
GATCCTCGGTGACAGAAATGCTAAGGAAGTTGTAACTGAAGATTCATTGTTGTCAAAAACTGATACCGCGAACACTTATGCTGCTGCAGAGAAAAGAGGAGAAGCGAAAAACGAGAACAGAATATCAATGAACAGGCCAACTATGCCCATGAATCCAATGGTATCGACATCTTATGAAATGGATCCCAGAAAATTGCATG
GAAGAACAGAAGATCAAAATTGCCTTCAAAGAAGTGTCTCAGAGAACAAGGAAGATGCCAGAAGTTTTCCTTCCAGTGAGCCTCAAACAATGTGTGGGTCTGTCCCATCATCAGCTAAATCTGATAAGGTGTTAAAGACAGTCATACATATACCAGACCTTATAGCTATCTCTCCGGCAAAGAGGGATAGCTGGGACATA
AAAGATCAGTTGCAAGACTATAAAGTAGCAACAGAAATAAAAACAGAAGCACAACCCACACAATGGACAACTTATGGACCAATTCACATTGAATCTGAATCTGTGAAGCCTGAGACTGTTGTTTTGAAGGATTTTCCAATTCACCATCTTTCTGAAGCAATGGCTGTCAAAAGGAAATCTCCTGAGGACCTAGATTCGCT
TGGACATGCTTTCATTAATGAAATGTCAGTGTGGTTTAGTAATAATAATGAAGACGTACCCCATACAGGTTCAACTCTGCCTTCTTGCAGACAAGCTTCGGAAAAAACGACAGACATCAATGATGGACCTGAAAATGCTAATGAGAAGAGTTTATCTCAACCAAATAACTCCATTCCATCTGTTAGTTTATATGTGACTG
AAGCTGCCTCAAACCAAACACAGTACCAGACTAGCACAATCAATTCTGTGCTTCAGAAGTCATTATATCAAACAGATTCCATCGCTGATGGTATACATGCCATTATATTTGAAAGGAATGCACAAATTTCACATCAGGAAAATGGAATCTTATTACAAGCTGTACAGgtataaatatatctgccttcactcttaagtcat
tatgttatctttcttgttagagactaaatctttggtatgaggaacttgaagaggtatatcaccatagagcagacaaagtgaataggttgcttattttgctgtgcatgctgctttttcctggattaagtaacttgatcttttttggacaacaaaaatgtatcatattgttagcatgggcttcagataaatctgaaaggttt
ttgtagGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTC
TAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTG
TCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTT
GGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAG
AAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTT
GCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCAT
GATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAG
AGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTT
Intron 3 GTCCTGGAGA ... AGCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.33 | 20 | 22 | 34 |
| A2 | 65.96 | 8 | 11 | 20 |
| A3 | 62.96 | 10 | 15 | 19 |
| A4 | 57.45 | 10 | 14 | 13 |
| A5 | 39.39 | 10 | 2 | 11 |
| A6 | 11.11 | 16 | 0 | 4 |
| A7 | 70.15 | 10 | 12 | 35 |
| A8 | 54.29 | 8 | 2 | 17 |
| A9 | 58.97 | 8 | 5 | 18 |
| A10 | 36 | 16 | 7 | 11 |
>TRINITY_DN39722_c0_g1_i10 from sample A8 / Example spliced isoformCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCATGTGGAAGTCAATCCAGTTCC
TTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACCATTTTCTAACTTCAATTTTCT
GCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGAAGGCGAGGTTGATGACTGGCTGCGTG
CTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAG
GCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACG
TGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCAC
AGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCA
GCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTAT
TATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCT
AGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGAT
TCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTTTTCATTCTGTTTATGGGATATCTGAGA
>TRINITY_DN39722_c0_g1_i5 from sample A8 / Example unspliced isoform:CCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCATGTGGAAGTCAATCCAGTTCC
TTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACCATTTTCTAACTTCAATTTTCT
GCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGgtcctggagaggaaatcaagtcctgatg
ttacgtaccttgaaattgagaaattcatcaaatctgtatcaagtaacagtaaaggaaagaggaaatctaatggtctcattcgccaagtaatgataaggaaaggaaaaagagatatctcccccattgagccagttaggcctggtaccattgcaaaaggacttgacatgaaatttgattccaaggatgctactcgtgaagtt
ttactgcgaagatcatgttctatgcaaaaacaggcacatgattttcatgggtttgcacctcagcctacaacactacagtttccttcaaagaagaatgaggtctcagttaagacaagcttagaagatactgtcttgctgcgaagacctgaagccataaggattgactataatttgagaaagatcctcggtgacagaaatgc
taaggaagttgtaactgaagattcattgttgtcaaaaactgataccgcgaacacttatgctgctgcagagaaaagaggagaagcgaaaaacgagaacagaatatcaatgaacaggccaactatgcccatgaatccaatggtatcgacatcttatgaaatggatcccagaaaattgcatggaagaacagaagatcaaaatt
gccttcaaagaagtgtctcagagaacaaggaagatgccagaagttttccttccagtgagcctcaaacaatgtgtgggtctgtcccatcatcagctaaatctgataaggtgttaaagacagtcatacatataccagaccttatagctatctctccggcaaagagggatagctgggacataaaagatcagttgcaagactat
aaagtagcaacagaaataaaaacagaagcacaacccacacaatggacaacttatggaccaattcacattgaatctgaatctgtgaagcctgagactgttgttttgaaggattttccaattcaccatctttctgaagcaatggctgtcaaaaggaaatctcctgaggacctagattcgcttggacatgctttcattaatga
aatgtcagtgtggtttagtaataataatgaagacgtaccccatacaggttcaactctgccttcttgcagacaagcttcggaaaaaacgacagacatcaatgatggacctgaaaatgctaatgatttatatgtgactgaagctgcctcaaaccaaacacagtaccagactagcacaatcaattctgtgcttcagaagtcat
tatatcaaacagattccatcgctgatggtatacatgccattatatttgaaaggaatgcacaaatttcacatcaggaaaatggaatcttattacaagctgtacagGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTT
GCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAA
AGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATT
TTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAA
GTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGAT
TCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTG
AGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCT
GGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACA
AGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTTTTCATTCTGTTTATGGGATATCTGAGA
Intron 4 GTCCTGGAGA ... GTTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.62 | 20 | 22 | 19 |
| A2 | 56.76 | 8 | 11 | 10 |
| A3 | 50 | 10 | 15 | 5 |
| A4 | 50 | 10 | 14 | 6 |
| A5 | 28.57 | 10 | 2 | 6 |
| A6 | 11.11 | 16 | 0 | 4 |
| A7 | 45.95 | 10 | 12 | 5 |
| A8 | 30.43 | 8 | 2 | 5 |
| A9 | 38.46 | 8 | 5 | 5 |
| A10 | 25.58 | 16 | 7 | 4 |
>TRINITY_DN124309_c0_g1_i7 from sample A1 / Example spliced isoformCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGAAGGCG
AGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCA
ACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGT
TGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAG
AGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCA
ACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGG
ACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAA
GCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACA
GTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTT
>TRINITY_DN124309_c0_g1_i8 from sample A1 / Example unspliced isoform:CAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGgtcctgg
agaggaaatcaagtcctgatgttacgtaccttgaaattgagaaattcatcaaatctgtatcaagtaacagtaaaggaaagaggaaatctaatggtctcattcgccaagtaatgataaggaaaggaaaaagagatatctcccccattgagccagttaggcctggtaccattgcaaaaggacttgacatgaaatttgattcc
aaggatgctactcgtgaagttttactgcgaagatcatgttctatgcaaaaacaggcacatgattttcatgggtttgcacctcagcctacgacactacagtttccttcaaagaagaatgaggtctcagttaagacaagcttagaagatactgtcttgctgcgaagacctgaagccataaggattgactataatttgagaaa
gatcctcggtgacagaaatgctaaggaagttgtaactgaagattcattgttgtcaaaaactgataccgcgaacacttatgctgctgcagagaaaagaggagaagcgaaaaacgagaacagaatatcaatgaacaggccaactatgcccatgaatccaatggtatcgacatcttatgaaatggatcccagaaaattgcatg
gaagaacagaagatcaaaattgccttcaaagaagtgtctcagagaacaaggaagatgccagaagttttccttccagtgagcctcaaacaatgtgtgggtctgtcccatcatcagctaaatctgataaggtgttaaagacagtcatacatataccagaccttatagctatctctccggcaaagagggatagctgggacata
aaagatcagttgcaagactataaagtagcaacagaaataaaaacagaagcacaacccacacaatggacaacttatggaccaattcacattgaatctgaatctgtgaagcctgagactgttgttttgaaggattttccaattcaccatctttctgaagcaatggctgtcaaaaggaaatctcctgaggacctagattcgct
tggacatgctttcattaatgaaatgtcagtgtggtttagtaataataatgaagacgtaccccatacaggttcaactctgccttcttgcagacaagcttcggaaaaaacgacagacatcaatgatggacctgaaaatgctaatgagaagagtttatctcaaccaaataactccattccatctgttagtttatatgtgactg
aagctgcctcaaaccaaacacagtaccagactagcacaatcaattctgtgcttcagaagtcattatatcaaacagattccatcgctgatggtatacatgccattatatttgaaaggaatgcacaaatttcacatcaggaaaatggaatcttattacaagctgtacaggtataaatatatctgccttcactcttaagtcat
tatgttatctttcttgttagagactaaatctttggtatgaggaacttgaagaggtatatcaccatagagcagacaaagtgaataggttgcttattttgctgtgcatgctgctttttcctggattaagtaacttgatcttttttggacaacaaaaatgtatcatattgttagcatgggcttcagataaatctgaaaggttt
ttgtagGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTC
TAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTG
TCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTT
GGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAG
AAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTT
GCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCAT
GATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAG
AGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTT
Intron 5 GTCCTGGAGA ... AGCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.57 | 18.5 | 22 | 34 |
| A2 | 69.73 | 7 | 11 | 20 |
| A3 | 65.35 | 9.2 | 15 | 19 |
| A4 | 59.41 | 9.3 | 14 | 13 |
| A5 | 43.14 | 9 | 2 | 11 |
| A6 | 11.11 | 16 | 0 | 4 |
| A7 | 71.73 | 9.3 | 12 | 35 |
| A8 | 54.83 | 7.5 | 2 | 16 |
| A9 | 59.37 | 7.3 | 5 | 16 |
| A10 | 37.14 | 15.3 | 7 | 11 |
>TRINITY_DN124309_c0_g1_i7 from sample A1 / Example spliced isoformCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGAAGGCG
AGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCA
ACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGT
TGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAG
AGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCA
ACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGG
ACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAA
GCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACA
GTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTT
>TRINITY_DN124309_c0_g1_i10 from sample A1 / Example unspliced isoform:CAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCA
TGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACC
ATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGgtcctgg
agaggaaatcaagtcctgatgttacgtaccttgaaattgagaaattcatcaaatctgtatcaagtaacagtaaaggaaagaggaaatctaatggtctcattcgccaagtaatgataaggaaaggaaaaagagatatctcccccattgagccagttaggcctggtaccattgcaaaaggacttgacatgaaatttgattcc
aaggatgctactcgtgaagttttactgcgaagatcatgttctatgcaaaaacaggcacatgattttcatgggtttgcacctcagcctacgacactacagtttccttcaaagaagaatgaggtctcagttaagacaagcttagaagatactgtcttgctgcgaagacctgaagccataaggattgactataatttgagaaa
gatcctcggtgacagaaatgctaaggaagttgtaactgaagattcattgttgtcaaaaactgataccgcgaacacttatgctgctgcagagaaaagaggagaagcgaaaaacgagaacagaatatcaatgaacaggccaactatgcccatgaatccaatggtatcgacatcttatgaaatggatcccagaaaattgcatg
gaagaacagaagatcaaaattgccttcaaagaagtgtctcagagaacaaggaagatgccagaagttttccttccagtgagcctcaaacaatgtgtgggtctgtcccatcatcagctaaatctgataaggtgttaaagacagtcatacatataccagaccttatagctatctctccggcaaagagggatagctgggacata
aaagatcagttgcaagactataaagtagcaacagaaataaaaacagaagcacaacccacacaatggacaacttatggaccaattcacattgaatctgaatctgtgaagcctgagactgttgttttgaaggattttccaattcaccatctttctgaagcaatggctgtcaaaaggaaatctcctgaggacctagattcgct
tggacatgctttcattaatgaaatgtcagtgtggtttagtaataataatgaagacgtaccccatacaggttcaactctgccttcttgcagacaagcttcggaaaaaacgacagacatcaatgatggacctgaaaatgctaatgagaagagtttatctcaaccaaataactccattccatctgttagtttatatgtgactg
aagctgcctcaaaccaaacacagtaccagactagcacaatcaattctgtgcttcagaagtcattatatcaaacagattccatcgctgatggtatacatgccattatatttgaaaggaatgcacaaatttcacatcaggaaaatggaatcttattacaagctgtacagGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAG
TCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGG
ATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGA
CATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTG
TCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTTTGTTCACAACTATATTAAGACCTTGTCATTAGCTCAAGGCCTTTATAACCACAGAGGATTAATGTGGTGTCTTTCTAGTTTCAAGTTCAAAAGGGCAATAGAGATTTATTGTTGAATTTAAAAATAAGGATGGCCGTTGGTATTATGTT
AAATGATGGTTTGACATGATTTTCGTAACTTAATGACAGTCTTATTGATCATCATAGGACTAATCATATTCCACAGGTCTCCATGCTCACTGTCACAGCATTGCTACTAAAATCTGATGCACAGTGTTTTTGATTCAATAATTTGCAAACCATTCCTTTCTATTTCAGTGTTATTGGATCTTTTTTGCTTGTCAAATGAA
GGTTTTGTTGGAGATTCTTTAGTTTTCTAAAGAAACCATAGATTTATTAAATTTAAATCCAGTGTGCTCTTTTTTATATTTCAATTAGCATTATGCCCATGATCCTTCTCATATATAAGTATTTAAATGTTTTTAGGTATTTAGGCTTATATGCAATCTTAATTGATTTGAGTTTTCATCCATTCGTGATTGTTCATATG
TATGTCTGGCCAAATTTTTAATTAATTTTAAGTAGGGGTTAATGTATTTCCTATTGTATCCTTGAAGTGGTAGAGCTTGACTCCTAATTCAGTTTGTTAATTTATAAATCGGTGTTTGCTTGTTGATAGGTTGAGAATCAGTAGCAGAGCTAGATAGCTAGGCTA
Intron 6 GTAGTAAAGG ... ACAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 91.35 | 4 | 34 | 50.4 |
| A2 | 82.27 | 11 | 43.3 | 58.9 |
| A3 | 85.24 | 7 | 33.4 | 47.4 |
| A4 | 80.1 | 9 | 38.9 | 33.7 |
| A5 | 78.88 | 6 | 18.4 | 26.4 |
| A6 | 88.72 | 7 | 51.9 | 58.3 |
| A7 | 86.56 | 15 | 85.6 | 107.7 |
| A8 | 80.66 | 30 | 109.4 | 141.1 |
| A9 | 86.39 | 15 | 80.3 | 110.1 |
| A10 | 91.8 | 8 | 63.9 | 115.1 |
>TRINITY_DN39722_c0_g1_i3 from sample A8 / Example spliced isoformGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAA
GAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACT
TGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCA
TGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACA
GAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTTTTCATTCTGTTTATGGGATATCTGAGA
>TRINITY_DN39722_c0_g1_i9 from sample A8 / Example unspliced isoform:CCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATGGCCTGAGTGAATGAGCTCTTTCATGTGGAAGTCAATCCAGTTCC
TTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACCCCGCATTCACCATCACTATTACCATTTTCTAACTTCAATTTTCT
GCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCAGGAGACCTTCGCTAAGGTCCTGGAGAGGAAATCAAGTCCTGATG
TTACGTACCTTGAAATTGAGAAATTCATCAAATCTGTATCAAGTAACAGTAAAGGAAAGAGGAAATCTAATGGTCTCATTCGCCAAGTAATGATAAGGAAAGGAAAAAGAGATATCTCCCCCATTGAGCCAGTTAGGCCTGGTACCATTGCAAAAGGACTTGACATGAAATTTGATTCCAAGGATGCTACTCGTGAAGTT
TTACTGCGAAGATCATGTTCTATGCAAAAACAGGCACATGATTTTCATGGGTTTGCACCTCAGCCTACAACACTACAGTTTCCTTCAAAGAAGAATGAGGTCTCAGTTAAGACAAGCTTAGAAGATACTGTCTTGCTGCGAAGACCTGAAGCCATAAGGATTGACTATAATTTGAGAAAGATCCTCGGTGACAGAAATGC
TAAGGAAGTTGTAACTGAAGATTCATTGTTGTCAAAAACTGATACCGCGAACACTTATGCTGCTGCAGAGAAAAGAGGAGAAGCGAAAAACGAGAACAGAATATCAATGAACAGGCCAACTATGCCCATGAATCCAATGGTATCGACATCTTATGAAATGGATCCCAGAAAATTGCATGGAAGAACAGAAGATCAAAATT
GCCTTCAAAGAAGTGTCTCAGAGAACAAGGAAGATGCCAGAAGTTTTCCTTCCAGTGAGCCTCAAACAATGTGTGGGTCTGTCCCATCATCAGCTAAATCTGATAAGGTGTTAAAGACAGTCATACATATACCAGACCTTATAGCTATCTCTCCGGCAAAGAGGGATAGCTGGGACATAAAAGATCAGTTGCAAGACTAT
AAAGTAGCAACAGAAATAAAAACAGAAGCACAACCCACACAATGGACAACTTATGGACCAATTCACATTGAATCTGAATCTGTGAAGCCTGAGACTGTTGTTTTGAAGGATTTTCCAATTCACCATCTTTCTGAAGCAATGGCTGTCAAAAGGAAATCTCCTGAGGACCTAGATTCGCTTGGACATGCTTTCATTAATGA
AATGTCAGTGTGGTTTAGTAATAATAATGAAGACGTACCCCATACAGGTTCAACTCTGCCTTCTTGCAGACAAGCTTCGGAAAAAACGACAGACATCAATGATGGACCTGAAAATGCTAATGAGAAGAGTTTATCTCAACCAAATAACTCCATTCCATCTGTTAGTTTATATGTGACTGAAGCTGCCTCAAACCAAACAC
AGTACCAGACTAGCACAATCAATTCTGTGCTTCAGAAGTCATTATATCAAACAGATTCCATCGCTGATGGTATACATGCCATTATATTTGAAAGGAATGCACAAATTTCACATCAGGAAAATGGAATCTTATTACAAGCTGTACAGGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAG
CTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAG
TAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTG
GAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGAT
GTTCATTCCTTCCTAAAAGTCGGGGAGgtagtaaaggctaaagttttccacttggaccattctcttcaacgcatcagcctatccttgaaacaaatgcagCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTTCCCACT
GCATTTTAAACTACCTCGCTGCCTTTCATATGATGCTTCCTTACGTAGCATGCCTTTGGATTCATTCTTATATCACCTCGTTTCGCTTCCTCCCTCCCTTTTCAATCACAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAG
ATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCT
ATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAG
AATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTT
TCTTTTCATTCTGTTTATGGGATATCTGAGA
Intron 7 GTCCTGGAGA ... AGCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.94 | 20 | 11 | 34 |
| A2 | 61.9 | 8 | 6 | 20 |
| A3 | 58.33 | 10 | 9 | 19 |
| A4 | 53.49 | 10 | 10 | 13 |
| A5 | 39.39 | 10 | 2 | 11 |
| A6 | 11.11 | 16 | 0 | 4 |
| A7 | 67.74 | 10 | 7 | 35 |
| A8 | 51.52 | 8 | 1 | 16 |
| A9 | 52.94 | 8 | 2 | 16 |
| A10 | 43.86 | 16 | 14 | 11 |
>TRINITY_DN40980_c0_g2_i5 from sample A9 / Example spliced isoformCTTATAAATTCCCTCAGCCTTGTCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATG
GCCTGAGTGAATGAGCTCTTTCATGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACC
CCGCATTCACCATCACTATTACCATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCA
GGAGACCTTCGCTAAGGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTAC
AAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGG
ACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGT
ATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAG
TAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAG
TACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCAT
CATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATT
GTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTTTTCATTCTGTTTATGGGATATCTGAGTTTCGTCTAGAAGATCAAT
CTTAATTTCTTAAATCTATCCGTTGTATTGTCTGAACATGCTTTGGCGATATAAATCTC
>TRINITY_DN40980_c0_g2_i4 from sample A9 / Example unspliced isoform:CTTATAAATTCCCTCAGCCTTGTCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATG
GCCTGAGTGAATGAGCTCTTTCATGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACC
CCGCATTCACCATCACTATTACCATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCA
GGAGACCTTCGCTAAGgtcctggagaggaaatcaagtcctgatgttacgtaccttgaaattgagaaattcatcaaagtaagtaatggtctccatttaaattgtccaatgcaaagttcatcaacagagggaaaagaacaatcactaactaacttttccattggccagtctgtatcaagtaacagtaaaggaaagaggaaat
ctaatggtctcattcgccaagtaatgataaggaaaggaaaaagagatatctcccccattgagccagttaggcctggtaccattgcaaaaggacttgacatgaaatttgattccaaggatgctactcgtgaagttttactgcgaagatcatgttctatgcaaaaacaggcacatgattttcatgggtttgcacctcagcct
acaacactacagtttccttcaaagaagaatgaggtctcagttaagacaagcttagaagatactgtcttgctgcgaagacctgaagccataaggattgactataatttgagaaagatcctcggtgacagaaatgctaaggaagttgtaactgaagattcattgttgtcaaaaactgataccgcgaacacttatgctgctgc
agagaaaagaggagaagcgaaaaacgagaacagaatatcaatgaacaggccaactatgcccatgaatccaatggtatcgacatcttatgaaatggatcccagaaaattgcatggaagaacagaagatcaaaattgccttcaaagaagtgtctcagagaacaaggaagatgccagaagttttccttccagtgagcctcaaa
caatgtgtgggtctgtcccatcatcagctaaatctgataaggtgttaaagacagtcatacatataccagaccttatagctatctctccggcaaagagggatagctgggacataaaagatcagttgcaagactataaagtagcaacagaaataaaaacagaagcacaacccacacaatggacaacttatggaccaattcac
attgaatctgaatctgtgaagcctgagactgttgttttgaaggattttccaattcaccatctttctgaagcaatggctgtcaaaaggaaatctcctgaggacctagattcgcttggacatgctttcattaatgaaatgtcagtgtggtttagtaataataatgaagacgtaccccatacaggttcaactctgccttcttg
cagacaagcttcggaaaaaacgacagacatcaatgatggacctgaaaatgctaatgagaagagtttatctcaaccaaataactccattccatctgttagtttatatgtgactgaagctgcctcaaaccaaacacagtaccagactagcacaatcaattctgtgcttcagaagtcattatatcaaacagattccatcgctg
atggtatacatgccattatatttgaaaggaatgcacaaatttcacatcaggaaaatggaatcttattacaagctgtacagGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATT
GGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCA
AAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAA
TGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTT
CAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCT
CTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAG
AATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATG
TATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCA
ATGTTATTTTCATTTTCTTTTCATTCTGTTTATGGGATATCTGAGTTTCGTCTAGAAGATCAATCTTAATTTCTTAAATCTATCCGTTGTATTGTCTGAACATGCTTTGGCGATATAAATCTC
Intron 8 GTAAGTAATG ... CATTGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.22 | 31 | 9 | 3 |
| A2 | 22.45 | 19 | 3 | 8 |
| A3 | 15.38 | 22 | 3 | 5 |
| A4 | 18.75 | 13 | 4 | 2 |
| A5 | 100 | 0 | 0 | 4 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 20.83 | 19 | 6 | 4 |
| A8 | 0 | 3 | 0 | 0 |
| A9 | 18.52 | 11 | 3 | 2 |
| A10 | 50 | 5 | 8 | 2 |
>TRINITY_DN40980_c0_g2_i3 from sample A9 / Example spliced isoformCTTATAAATTCCCTCAGCCTTGTCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATG
GCCTGAGTGAATGAGCTCTTTCATGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACC
CCGCATTCACCATCACTATTACCATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCA
GGAGACCTTCGCTAAGGTCCTGGAGAGGAAATCAAGTCCTGATGTTACGTACCTTGAAATTGAGAAATTCATCAAATCTGTATCAAGTAACAGTAAAGGAAAGAGGAAATCTAATGGTCTCATTCGCCAAGTAATGATAAGGAAAGGAAAAAGAGATATCTCCCCCATTGAGCCAGTTAGGCCTGGTACCATTGCAAAAG
GACTTGACATGAAATTTGATTCCAAGGATGCTACTCGTGAAGTTTTACTGCGAAGATCATGTTCTATGCAAAAACAGGCACATGATTTTCATGGGTTTGCACCTCAGCCTACAACACTACAGTTTCCTTCAAAGAAGAATGAGGTCTCAGTTAAGACAAGCTTAGAAGATACTGTCTTGCTGCGAAGACCTGAAGCCATA
AGGATTGACTATAATTTGAGAAAGATCCTCGGTGACAGAAATGCTAAGGAAGTTGTAACTGAAGATTCATTGTTGTCAAAAACTGATACCGCGAACACTTATGCTGCTGCAGAGAAAAGAGGAGAAGCGAAAAACGAGAACAGAATATCAATGAACAGGCCAACTATGCCCATGAATCCAATGGTATCGACATCTTATGA
AATGGATCCCAGAAAATTGCATGGAAGAACAGAAGATCAAAATTGCCTTCAAAGAAGTGTCTCAGAGAACAAGGAAGATGCCAGAAGTTTTCCTTCCAGTGAGCCTCAAACAATGTGTGGGTCTGTCCCATCATCAGCTAAATCTGATAAGGTGTTAAAGACAGTCATACATATACCAGACCTTATAGCTATCTCTCCGG
CAAAGAGGGATAGCTGGGACATAAAAGATCAGTTGCAAGACTATAAAGTAGCAACAGAAATAAAAACAGAAGCACAACCCACACAATGGACAACTTATGGACCAATTCACATTGAATCTGAATCTGTGAAGCCTGAGACTGTTGTTTTGAAGGATTTTCCAATTCACCATCTTTCTGAAGCAATGGCTGTCAAAAGGAAA
TCTCCTGAGGACCTAGATTCGCTTGGACATGCTTTCATTAATGAAATGTCAGTGTGGTTTAGTAATAATAATGAAGACGTACCCCATACAGGTTCAACTCTGCCTTCTTGCAGACAAGCTTCGGAAAAAACGACAGACATCAATGATGGACCTGAAAATGCTAATGAGAAGAGTTTATCTCAACCAAATAACTCCATTCC
ATCTGTTAGTTTATATGTGACTGAAGCTGCCTCAAACCAAACACAGTACCAGACTAGCACAATCAATTCTGTGCTTCAGAAGTCATTATATCAAACAGATTCCATCGCTGATGGTATACATGCCATTATATTTGAAAGGAATGCACAAATTTCACATCAGGAAAATGGAATCTTATTACAAGCTGTACAGGAAGGCGAGG
TTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATTGGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACA
TTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCAAAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGG
TCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAATGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGG
CTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTTCAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACA
AAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCTCTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACA
TAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAGAATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCA
GTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATGTATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTG
TAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCAATGTTATTTTCATTTTCTTTTCATTCTGTTTATGGGATATCTGAGTTTCGTCTAGAAGATCAATCTTAATTTCTTAAATCTATCCGTTGT
ATTGTCTGAACATGCTTTGGCGATATAAATCTC
>TRINITY_DN40980_c0_g2_i4 from sample A9 / Example unspliced isoform:CTTATAAATTCCCTCAGCCTTGTCAGAAGTCCTCCCTTTCACCCCCTGGGTACTGTCGAAATCCTCTCGTCTGCGTTGGGCTGTGGGAATTGGGATCATGGATGGATACAAAGGCGGTGAAGAAATAAATAAATACTAAGACACAATCCAATGGTGTAAAAATGAAGGCTCACAACAGCTGGTGAAAAGATAGCTAAATG
GCCTGAGTGAATGAGCTCTTTCATGTGGAAGTCAATCCAGTTCCTTGGCAGTGACCGGTTAGTCGGTGACTGAGCCTATGACAGAACAAGAAGATGAGGTACAGTCAGTGGATTAAAGCATAGCAGGGCGGAAGAGCATGACATCGTATTTATCTCCACCTTCCGCAGCAGTCTGCCCTTGGCTGCGCAATACTGTAACC
CCGCATTCACCATCACTATTACCATTTTCTAACTTCAATTTTCTGCGGGATTCTCCAACTTACAGTCGTAGTAGAACTTACATTGTTTTAGCCTCTGCTGATGGCGAGAAACAACAAAGAGAAGCGGACCAGGGAATCGAAACGGAGTCATCGGAGATGCTGGACCTTAAATTTGGCCACCCTATTGGCGAGACCACCCA
GGAGACCTTCGCTAAGGTCCTGGAGAGGAAATCAAGTCCTGATGTTACGTACCTTGAAATTGAGAAATTCATCAAAgtaagtaatggtctccatttaaattgtccaatgcaaagttcatcaacagagggaaaagaacaatcactaactaacttttccattggccagTCTGTATCAAGTAACAGTAAAGGAAAGAGGAAAT
CTAATGGTCTCATTCGCCAAGTAATGATAAGGAAAGGAAAAAGAGATATCTCCCCCATTGAGCCAGTTAGGCCTGGTACCATTGCAAAAGGACTTGACATGAAATTTGATTCCAAGGATGCTACTCGTGAAGTTTTACTGCGAAGATCATGTTCTATGCAAAAACAGGCACATGATTTTCATGGGTTTGCACCTCAGCCT
ACAACACTACAGTTTCCTTCAAAGAAGAATGAGGTCTCAGTTAAGACAAGCTTAGAAGATACTGTCTTGCTGCGAAGACCTGAAGCCATAAGGATTGACTATAATTTGAGAAAGATCCTCGGTGACAGAAATGCTAAGGAAGTTGTAACTGAAGATTCATTGTTGTCAAAAACTGATACCGCGAACACTTATGCTGCTGC
AGAGAAAAGAGGAGAAGCGAAAAACGAGAACAGAATATCAATGAACAGGCCAACTATGCCCATGAATCCAATGGTATCGACATCTTATGAAATGGATCCCAGAAAATTGCATGGAAGAACAGAAGATCAAAATTGCCTTCAAAGAAGTGTCTCAGAGAACAAGGAAGATGCCAGAAGTTTTCCTTCCAGTGAGCCTCAAA
CAATGTGTGGGTCTGTCCCATCATCAGCTAAATCTGATAAGGTGTTAAAGACAGTCATACATATACCAGACCTTATAGCTATCTCTCCGGCAAAGAGGGATAGCTGGGACATAAAAGATCAGTTGCAAGACTATAAAGTAGCAACAGAAATAAAAACAGAAGCACAACCCACACAATGGACAACTTATGGACCAATTCAC
ATTGAATCTGAATCTGTGAAGCCTGAGACTGTTGTTTTGAAGGATTTTCCAATTCACCATCTTTCTGAAGCAATGGCTGTCAAAAGGAAATCTCCTGAGGACCTAGATTCGCTTGGACATGCTTTCATTAATGAAATGTCAGTGTGGTTTAGTAATAATAATGAAGACGTACCCCATACAGGTTCAACTCTGCCTTCTTG
CAGACAAGCTTCGGAAAAAACGACAGACATCAATGATGGACCTGAAAATGCTAATGAGAAGAGTTTATCTCAACCAAATAACTCCATTCCATCTGTTAGTTTATATGTGACTGAAGCTGCCTCAAACCAAACACAGTACCAGACTAGCACAATCAATTCTGTGCTTCAGAAGTCATTATATCAAACAGATTCCATCGCTG
ATGGTATACATGCCATTATATTTGAAAGGAATGCACAAATTTCACATCAGGAAAATGGAATCTTATTACAAGCTGTACAGGAAGGCGAGGTTGATGACTGGCTGCGTGCTGAGTCCCTGCACAAGTCAGGAGAGCTTGAGGAGGTGGAGCTAGTTAGCTGCTTCAAGAGTGGTTTTGCTGTATCTTTTGGTTCACTTATT
GGGTTTCTGCCATGCCGAGATCTTGGTCCAGAAAGGAGGCCCTTTTCTTTTGAAGCATGGCTACAAGAGAAAGGTCTAGACCCATCAACATTCAAGAAAGATATAGAGGCAGGATGTAGCACACTTTTTGAAAGTAAGATGTCTACTCTGGTATTGACAACTTTTCCAAAGAACAAAGGAAGTATACAATCTGCAGAGCA
AAAGCATGCTGCTATGACTATTAGAGAATACCAGAATCTTCTTGATTTGTACTACCGAGATAGGACAAGCTTTTTGTCTTATTTTGTTGGTCAGAAAACAAGAGCACGTGTGACATCAGTTGACAGAAAATCTGGAAGGCTGTTATTCTCTGAGAAATTGAGAGAAGGTCGAGATTTTGGCAAGAAGAAAGCGGATCTAA
TGGGTAAACTAAATATTGGAGATGTAGTTACTGGTCAAGTTGCAAGCACCAGCCCTTTTGGTGTATATGTTGAGTTGGAAGGAGTAGAGGCTTTGATTCATCATTCACAGCTGTCATGGGAGCCAGTGTGGGATGTTCATTCCTTCCTAAAAGTCGGGGAGGTAGTAAAGGCTAAAGTTTTCCACTTGGACCATTCTCTT
CAACGCATCAGCCTATCCTTGAAACAAATGCAGCCCGATCAAGTGCTTGGGACTTTGGAATCAGTAATTAATGAAGAAAATGGTCCAACAAAGAGAAACCTTGAACCAGCAGAATTTAAAAATGAGTGGCCTGAGGTTGGATCTCTCATAAGAGAATTGGAGCTGGTGGATGGGATTCATAGTGTTTCAAAAGGCCGGCT
CTTACTCAGTCCTAGATGGGCTTCCAGGTTCCAGGTTTCTTTATCCGATTCACATGGCACTCAGTACAAGATACTTGCTAGATCTGGACATAGAGTACAAGAGATTATTATTCAAGCATCCCTAAGTAGAGATGAGATGAAGTCAGCTATTCTGTCTTTTCATCCCCAGTGGTGTGAGAAAATAGATGGTCAATAGATAG
AATGTGGGTGGTTCTATATTGCAATTATCTGCTTTGGAAATCGCTACATACTTGCCCTATTCATCATGCATTGCATGATATGTACAAGCAGTCAAATAATTGTGTTCTAGCTTGGTTATAACAGCTATTTGTAAAGTTTATCTCAAGTGATCGGAGTCCTAAGTTTCCATAGGCCTGGCTTGCATTTGAATCTCTATATG
TATGGCTAGTTGTAGAATTCTCAGTAGTGGGTAGAAGATGTGGACTATCATGCTTATGGGCATTGTTGACAGACAGAGTGCCGCACAGTGTAAAATGGATTTATTGATTCGTTATGTGAGACTAGCTTCTCAATCAATCTTGCTATTCAATCCTTTCTCTTACCAACAAGTTAACAAGAAGTCCAAATTTTGAATTACCA
ATGTTATTTTCATTTTCTTTTCATTCTGTTTATGGGATATCTGAGTTTCGTCTAGAAGATCAATCTTAATTTCTTAAATCTATCCGTTGTATTGTCTGAACATGCTTTGGCGATATAAATCTC