sp|Q9C550|LEU12_ARATH ----> 2-isopropylmalate synthase 2, chloroplastic
Intron 1 GTGAGATTCT ... GCATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.71 | 41 | 2.4 | 6.4 |
| A2 | 24.16 | 32 | 1.6 | 12.2 |
| A3 | 19.3 | 47 | 3.2 | 12.8 |
| A4 | 13 | 29 | 2 | 5 |
| A5 | 8.42 | 17 | 0.8 | 1.6 |
| A6 | 12.61 | 52 | 1.4 | 8.8 |
| A7 | 10.53 | 84 | 2 | 12 |
| A8 | 12.22 | 50 | 1 | 8.8 |
| A9 | 11.86 | 99 | 2.6 | 15.6 |
| A10 | 10.31 | 95 | 2.8 | 13.2 |
>TRINITY_DN126826_c0_g1_i12 from sample A1 / Example spliced isoformCTTCATTCTCATTTCTGTCTTGTGGCTAAGAAGCAAAATATATGATTTCATTTGTCAAATAAAAACCCTTAAACCCTTCATTCTCATTTGTTCAATAAACCCTTAAACCCTTTATTCTCATTCCTGTCTTGTGGCTGTATCATCTCGTTCATTCACTTAGATATCCGGCACGATGGCGCAAGTCTGCCTTGGGATTTCTC
CCATTCAGCGTTCTTCATGCCCAGTTTCGTGCCCACAGACACTCATTCAATCCCTTCGTCGTTCCTCCATCTCCTCTTTTCCTTCTGCAAAACTTCCTCGCCCCCAGCTCTTCTTCTTGTCCAAACAAACAGCGTCCCCTGCCCCAGTCAGATGCAGCAGCGTCGGCGAATCGAACCGCAGACGTCGGCCCGACTACATC
CCCAACAGGATCGACGACCCCTCCTATGTCCGCATATTCGACACCACTCTCCGCGACGGCGAACAGTCACCGGGAGCCACCATGACAAGCAAGGAAAAACTCGACGTCGCCAGGCAGCTCGCGAAGCTGGGAGTCGATATAATCGAAGCCGGGTTCCCCATAGCCTCGCCCGATGACCTAGAAGCCGTGAGAAACATTGC
CAAGGAGGTCGGCAACCACGTCGACGACGACGGTTACGTGCCCGTCATCTGTGGACTGGCGAGGTGCAATAAAGCCGACATCGACGCCTCCTGGGAAGCCGTTCGACATGCCCTACGACCGAGAATTCATACTTTCATTGCCACCAGTGACATACACCTCAAGTATAAGTTGAAGAAGTCCCGGGACGAGGTTATCAGTA
TTGCCAGAGACATGGTGGCTTATGCCCGCAGCCTTGGTTGCAACGATGTCGAATTCAGCCCCGAAGACGCCGGGAGGTCTGATCGTGAATTTCTTTACCAGATACTGGCGGAAGTGATTATGGCAGGGGCAACTACTTTAAATATTCCAGATACTGTGGGATACACATTACCTACAGAATTTGGTAAATTGATTGCCGAC
ATTAAAGCCAACACTCCAGGCATTGAGAATGCAATCATTTCAACACACTGCCAGAATGACCTTGGACTCTCTACAGCAAACACCTTGGCTGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAGGGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCGTGGGAAAGAACAATTAGGG
GGCCTTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGTGGTCGCCATGCCTTGAGGACACGGTTATTGTGGGAAAGAACAATTAGGGGGCCTTTATACT
GGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGGCAAGTAAGCTTATTTTATTTCCCCAAAAGTCTCTTTGACGTTTTAAAAATGTGCTACATTTGAGTACTTTTCC
AATGCAAAATCATACTTGAAAGATCCAGATGCTGGAAACCTCAGTTTTAACCATTTATGGTGTGTGACAGCATTTATGGTAATTCTGCAGTCATCCTAAATAGTGTTGTTTTTCCTCACTAATGGATTCTGGTAATGTGCATCAAGTTAACAAGTAAACATTCTGAGGAATACATGCAGTAATGATCAATTTCTTGGAGA
AGTAACCAACCAATAAACTTGAACAACTTGGTATCACTGTGATGCAAATAAATCCAGCTATTATATGACTACTGAATCCTATTTTGTGTTGTCAAGGATTACAATGGAATCTAATATACTTGCCCTGGAACATATCCAGAGTAGTTTCTAGAAGTATACACAGAGATTGACCTCACAGATCACACCATAAATCTAATATG
CACACTATGTTTAAGATTTCAATTTGGCTTCACATCTATTTAAAGGACATTAAGAAAAACTCAACATTAATACAATATAAGAGTTTTCTGTCATTTTTCTTGTTCCTTATGCAACATTAACTATTTTGCTGTGATCAGAGAAATGACAGAGAAAACTTCTATATCATTGAAAGATTGTGTTTCAAAACCCTGCTAACTCA
AAAAGCAGAATCGGCCTTCATGAATGTAGAAACTGATCATTGGGCTAATGTCTACCAGCTTATCTAGTGCCTGATAGTCTCACATAGCTTATATTTCAGAAAATCAAATGAAGCAGATGAGAAATATTCAGTGGTTACAGATTTTGCACAGATAATTGTGTCAAATCAGCAAGACAATTAAGAGCTGGAAATAACCATCC
CA
>TRINITY_DN126826_c0_g1_i5 from sample A1 / Example unspliced isoform:ATATAATCGAAGCCGGGTTCCCCATAGCCTCGCCCGATGACCTAGAAGCCGTGAGAAACATTGCCAAGGAGGTCGGCAACCACGTCGACGACGACGGTTACGTGCCCGTCATCTGTGGACTGGCGAGGTGCAATAAAGCCGACATCGACGCCTCCTGGGAAGCCGTTCGACATGCCCTACGACCGAGAATTCATACTTTC
ATTGCCACCAGTGACATACACCTCAAGTATAAGTTGAAGAAGTCCCGGGACGAGGTTATCAGTATTGCCAGAGACATGGTGGCTTATGCCCGCAGCCTTGGTTGCAACGATGTCGAATTCAGCCCCGAAGACGCCGGGAGGTCTGATCGTGAATTTCTTTACCAGATACTGGCGGAAGTGATTATGGCAGGGGCAACTAC
TTTAAATATTCCAGATACTGTGGGATACACATTACCTACAGAATTTGGTAAATTGATTGCCGACATTAAAGCCAACACTCCAGGCATTGAGAATGCAATCATTTCAACACACTGCCAGAATGACCTTGGACTCTCTACAGCAAACACCTTGGCTgtgagattctattataattatgcttcgcaataaatagtctgaactt
ttgtagtatttggcattgatatctcatttcttatgctaggtgatatgaatccagggtgcatatgcagGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAGGGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCG
Intron 2 GTGATATGAA ... GCATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.83 | 38.7 | 36 | 37 |
| A2 | 57.49 | 29.2 | 37 | 40 |
| A3 | 49.12 | 42.5 | 35 | 44 |
| A4 | 46.69 | 26.8 | 22 | 24 |
| A5 | 46.28 | 16.8 | 15 | 14 |
| A6 | 49.5 | 47.7 | 42 | 49 |
| A7 | 49.81 | 77.7 | 72 | 79 |
| A8 | 48.65 | 45.7 | 40 | 44 |
| A9 | 48.47 | 91.7 | 81 | 88 |
| A10 | 52.04 | 86.2 | 89 | 92 |
>TRINITY_DN112018_c0_g2_i7 from sample A3 / Example spliced isoformGCAAAATATATGATTTCATTTGTCAAATAAAAACCCTTAAACCCTTCATTCTCATTTGTTCAATAAACCCTTAAACCCTTTATTCTCATTCCTGTCTTGTGGCTGTATCATCTCGTTCATTCACTTAGATATCCGGCACGATGGCGCAAGTCTGCCTTGGGATTTCTCCCATTCAGCGTTCTTCATGCCCAGTTTCGTGC
CCACAGACACTCATTCAATCCCTTCGTCGTTCCTCCATCTCCTCTTTTCCTTCTGCAAAACTTCCTCGCCCCCAGCTCTTCTTCTTGTCCAAACAAACAGCGTCCCCTGCCCCAGTCAGATGCAGCAGCGTCGGCGAATCGAACCGCAGACGTCGGCCCGACTACATCCCCAACAGGATCGACGACCCCTCCTATGTCCG
CATATTCGACACCACTCTCCGCGACGGCGAACAGTCACCGGGAGCCACCATGACAAGCAAGGAAAAACTCGACGTCGCCAGGCAGCTCGCGAAGCTGGGAGTCGATATAATCGAAGCCGGGTTCCCCATAGCCTCGCCCGATGACCTAGAAGCCGTGAGAAACATTGCCAAGGAGGTCGGCAACCACGTCGACGACGATG
GTTACGTGCCCGTCATCTGTGGACTGGCTAGGTGCAATAAAGCCGACATCGACGCCTCCTGGGAAGCCGTTCGACATGCCCTACGACCGAGAATTCATACTTTCATTGCCACCAGTGACATACACCTCAAGTATAAGTTGAAGAAGTCCCGGGACGAGGTTATCAGTATTGCCAGAGACATGGTGGCTTATGCCCGCAGC
CTTGGTTGCAACGATGTCGAATTCAGCCCCGAAGATGCCGGGAGGTCTGATCGTGAATTTCTTTACCAGATACTGGCGGAAGTGATTATGGCAGGGGCAACTACTTTAAATATTCCAGATACTGTGGGATACACATTACCTACAGAATTTGGTAAATTGATTGCCGACATTAAAGCCAACACTCCAGGCATTGAGAATGC
AATCATTTCAACACACTGCCAGAATGACCTTGGACTCTCTACAGCAAACACCTTGGCTGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAGGGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCGTGGGAAAGAACAATTAGGGGGCCTTTATACTGGAATCAATACAAAACAGAT
AACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGGATGGAATGCTCAAGTTCAAAGGTACATATGAAATTATTTGTCCAGAAGATATTGGTTTAAAACGAGCAGATGAATCTGGCATTGTTCTTGGAA
AACTTAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTGGATGGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGAACAGAAGAAATCACTGTCTGATGAAGACTTGGAAGCTTTGACTTCAGATGAAGTTTTTCAACCCCGAGTTATCTGGTCACTTGGTGATTTGCAG
GTGAGTTGTGGTACATTGGGCCTTTCTACAGGGACTGTCAAACTAATAGGTCCAGATGGAGAAGAGCATGTTGGATGTGCTGTTGGTACTGGTCCAGTAGATGCTGCATACAAGGCTATTGATAGCATTATTAAGATACCTGTGACCCTTTTGGAGTATTCACTCACGTCTGTTACAGAAGGTATTGATGCAATTGCATC
TACAAGAGTCCTGATACGAGGGGATCAAGGTCTTTCTTCTACACATGCACTGACTGGAGCAACTGTTCAACGGACCTTCAGTGGAACGGGAGCTGGAATGGATATAGTAGTCTCCAGTGTCCGTGCATATATAGGTGCCCTGAACAAAATGATAGCATTTAAAGTTGGACCGAAGAGTCGGGTGTGAATGAAGGCACCCA
ATATCACTGCATGAAATAAATCTTGTCATATGGACTTGATTTTGCATTATTGCTTATTTAAAAGCCTCTTATTTCGAAATTAATGATGGTTGTTTCTCTTCACATTAGGCTAGTAAAGTTTTCGAGGAAATATTTGTAAACAGATTAGTTTTCTTGTCAAAATATTTATATTATTGTTTTTGATGGGGGCAGTAGTTTGC
TCTATTTTAAAACGCTTAGCTCTGTTTTGTCTACATGAAAAGAGCCTACCACTCTCATCCTCTTGGTATTAAACACTC
>TRINITY_DN112018_c0_g2_i10 from sample A3 / Example unspliced isoform:GCAAAATATATGATTTCATTTGTCAAATAAAAACCCTTAAACCCTTCATTCTCATTTGTTCAATAAACCCTTAAACCCTTTATTCTCATTCCTGTCTTGTGGCTGTATCATCTCGTTCATTCACTTAGATATCCGGCACGATGGCGCAAGTCTGCCTTGGGATTTCTCCCATTCAGCGTTCTTCATGCCCAGTTTCGTGC
CCACAGACACTCATTCAATCCCTTCGTCGTTCCTCCATCTCCTCTTTTCCTTCTGCAAAACTTCCTCGCCCCCAGCTCTTCTTCTTGTCCAAACAAACAGCGTCCCCTGCCCCAGTCAGATGCAGCAGCGTCGGCGAATCGAACCGCAGACGTCGGCCCGACTACATCCCCAACAGGATCGACGACCCCTCCTATGTCCG
CATATTCGACACCACTCTCCGCGACGGCGAACAGTCACCGGGAGCCACCATGACAAGCAAGGAAAAACTCGACGTCGCCAGGCAGCTCGCGAAGCTGGGAGTCGATATAATCGAAGCCGGGTTCCCCATAGCCTCGCCCGATGACCTAGAAGCCGTGAGAAACATTGCCAAGGAGGTCGGCAACCACGTCGACGACGATG
GTTACGTGCCCGTCATCTGTGGACTGGCTAGGTGCAATAAAGCCGACATCGACGCCTCCTGGGAAGCCGTTCGACATGCCCTACGACCGAGAATTCATACTTTCATTGCCACCAGTGACATACACCTCAAGTATAAGTTGAAGAAGTCCCGGGACGAGGTTATCAGTATTGCCAGAGACATGGTGGCTTATGCCCGCAGC
CTTGGTTGCAACGATGTCGAATTCAGCCCCGAAGATGCCGGGAGGTCTGATCGTGAATTTCTTTACCAGATACTGGCGGAAGTGATTATGGCAGGGGCAACTACTTTAAATATTCCAGATACTGTGGGATACACATTACCTACAGAATTTGGTAAATTGATTGCCGACATTAAAGCCAACACTCCAGGCATTGAGAATGC
AATCATTTCAACACACTGCCAGAATGACCTTGGACTCTCTACAGCAAACACCTTGGCTgtgatatgaatccagggtgcatatgcagGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAGGGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCGTGGGAAAGAACAATTAGGGGGCC
TTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGGATGGAATGCTCAAGTTCAAAGGTACATATGAAATTATTTGTCCAGAAGATATTGGTTTAAAACGA
GCAGATGAATCTGGCATTGTTCTTGGAAAACTTAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTGGATGGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGAACAGAAGAAATCACTGTCTGATGAAGACTTGGAAGCTTTGACTTCAGATGAAGTTTTTCAACCCCG
AGTTATCTGGTCACTTGGTGATTTGCAGGTGAGTTGTGGTACATTGGGCCTTTCTACAGGGACTGTCAAACTAATAGGTCCAGATGGAGAAGAGCATGTTGGATGTGCTGTTGGTACTGGTCCAGTAGATGCTGCATACAAGGCTATTGATAGCATTATTAAGATACCTGTGACCCTTTTGGAGTATTCACTCACGTCTG
TTACAGAAGGTATTGATGCAATTGCATCTACAAGAGTCCTGATACGAGGGGATCAAGGTCTTTCTTCTACACATGCACTGACTGGAGCAACTGTTCAACGGACCTTCAGTGGAACGGGAGCTGGAATGGATATAGTAGTCTCCAGTGTCCGTGCATATATAGGTGCCCTGAACAAAATGATAGCATTTAAAGTTGGACCG
AAGAGTCGGGTGTGAATGAAGGCACCCAATATCACTGCATGAAATAAATCTTGTCATATGGACTTGATTTTGCATTATTGCTTATTTAAAAGCCTCTTATTTCGAAATTAATGATGGTTGTTTCTCTTCACATTAGGCTAGTAAAGTTTTCGAGGAAATATTTGTAAACAGATTAGTTTTCTTGTCAAAATATTTATATT
ATTGTTTTTGATGGGGGCAGTAGTTTGCTCTATTTTAAAACGCTTAGCTCTGTTTTGTCTACATGAAAAGAGCCTACCACTCTCATCCTCTTGGTATTAAACACTC
Intron 3 GTGTGATTTA ... GTTGCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.72 | 67 | 0 | 22 |
| A2 | 16.67 | 45 | 0 | 9 |
| A3 | 15.52 | 49 | 0 | 9 |
| A4 | 18.57 | 57 | 2 | 13 |
| A5 | 28.57 | 15 | 0 | 6 |
| A6 | 21.13 | 280 | 0 | 75 |
| A7 | 16.77 | 278 | 4 | 56 |
| A8 | 15.84 | 372 | 3 | 70 |
| A9 | 17.39 | 304 | 1 | 64 |
| A10 | 16.95 | 196 | 0 | 40 |
>TRINITY_DN41822_c0_g2_i1 from sample A6 / Example spliced isoformCTTGATATGTTTAGTCTTGGAGAATGAAACTTTGGTTTTGGGACTTCCTTGGATGGTAACTTAAATTATTGTTCTTTACTTTCTCTTGACAGTCACTGTCTGATGAAGACTTGGAAGCTTTGACTTCAGATGAAGTTTTTCAACCCCGAGTTATCTGGTCACTTGGTGATTTGCAGGTGAGTTGTGGTACATTGGGCCTT
TCTACAGGGACTGTCAAACTAATAGGTCCAGATGGAGAAGAGCATGTTGGATGTGCTGTTGGTACTGGTCCAGTAGATGCTGCATACAAGGCTATTGATAGCATTATTAAGATACCTGTGACCCTTTTGGAGTATTCACTCACGTCTGTTACAGAAGGTATTGATGCAATTGCATCTACAAGAGTCCTGATACGAGGGGA
TCAAGGTCTTTCTTCTACACATGCACTGACTGGAGCAACTGTTCAACGGACCTTCAGTGGAACGGGAGCTGGAATGGATATAGTAGTCTCCAGTGTCCGTGCATATATAGGTGCCCTGAACAAAATGATAGCATTTAAAGTTGGACCGAAGAGTCGGGTGTGAATGAAGGCACCCAATATCACTGCATGAAATAAATCTT
GTCATATGGACTTGATTTTGCATTATTGCTTATTTAAAAGCCTCTTATTTCGAAATTAATGATGGTTGTTTCTCTTCACATTAGGCTAGTAAAGTTTTCGAGGAAATATTTGTAAACAGATTAGTTTTCTTGTCAAAATATTTATATTATTGTTTTTGATGGGGGCAGTAGTTTGCTCTATTTTAAAACGCTTAGCTCTG
TTTTGTCTACATGAAAAGAGCCTACCACTCTCATCCTCTTGGTATTAAACACTCTATGGCATCAACAATCTACAAGGCAGGGGTATGACTTTTCATAATGTTTCATAATTTTTTTTGTTTATGTTAAAGACCCCACCTTGCTTGTTTCAAGATTGCTTTGCGGGTTATGACTTTCAAGAAAGTTACAATTCCTGGACTAT
CTACTTTCTCAGAAATTTCATCCTTTGTATCATATTTTCGAAAAATATCCGAGCTATGCTTGCTTGGAACAGATACTGACCATTGTAATCTGGATGACAATTTTAATGAAATAGAGCTATTAATGGGTTTGCAAATAGGAGTTCTTTTGCATGCTTGGAGGCGGCACACTCGTGGGACTGAATATTGGTTAGGTAGAAGG
CAGCCCCTTGTTAAAATTGTGCTCTATATTTTTCACAATTCGGTTAGTCTTGTGCAAGAGCCCTTTAAATTGCATTTAAGCAAATTTCCATTTGAATAATTATACTCTATATGCGGAATTATGCGGATAGAATTATAAAT
>TRINITY_DN41822_c0_g2_i6 from sample A6 / Example unspliced isoform:GCAACTGTTCAACGGACCTTCAGgtgtgatttatattccattcaattgttgtgacattatcctatcacgtgtcacgtgagatctatttatcacctgaaaacgttattgtcagcatttttctcaccttgaataaacttccttgctgttgccacagTGGAACGGGAGCTGGAATGGATATAGTAGTCTCCAGTGTCCGTGCA
TATATAGGTGCCCTGAACAAAATGATAGCATTTAAAGTTGGACCGAAGAGTCGGGTGTGAATGAAGGCACCCAATATCACTGCATGAAATAAATCTTGTCATATGGACTTGATTTTGCATTATTGCTTATTTAAAAGCCTCTTATTTCGAAATTAATGATGGTTGTTTCTCTTCACATTAGGCTAGTAAAGTTTTCGAGG
AAATATTTGTAAACAGATTAGTTTTCTTGTCAAAATATTTATATTATTGTTTTTGATGGGGGCAGTAGTTTGCTCTATTTTAAAACGCTTAGCTCTGTTTTGTCTACATGAAAAGAGCCTACCACTCTCATCCTCTTGGTATTAAACACTCTATGGCATCAACAATCTACAAGGCAGGGGTATGACTTTTCATAATGTTT
CATAATTTTTTTTGTTTATGTTAAAGACCCCACCTTGCTTGTTTCAAGATTGCTTTGCGGGTTATGACTTTCAAGAAAGTTACAATTCCTGGACTATCTACTTTCTCAGAAATTTCATCCTTTGTATCATATTTTCGAAAAATATCCGAGCTATGCTTGCTTGGAACAGATACTGACCATTGTAATCTGGATGACAATTT
TAATGAAATAGAGCTATTAATGGGTTTGCAAATAGGAGTTCTTTTGCATGCTTGGAGGCGGCACACTCGTGGGACTGAATATTGGTTAGGTAGAAGGCAGCCCCTTGTTAAAATTGTGCTCTATATTTTTCACAATTCGGTTAGTCTTGTGCAAGAGCCCTTTAAATTGCATTTAAGCAAATTTCCATTTGAATAATTAT
ACTCTATATGCGGAATTATGCGGATAGAATTATAAAT
Intron 4 GTGAGATTCT ... CTTATGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.47 | 36 | 1 | 2.5 |
| A2 | 13.21 | 37 | 1 | 6 |
| A3 | 11.38 | 35 | 2 | 4.5 |
| A4 | 4.35 | 22 | 1 | 1 |
| A5 | 3.13 | 15 | 0 | 0.5 |
| A6 | 1.17 | 42 | 0 | 0.5 |
| A7 | 5 | 72 | 0 | 4 |
| A8 | 1.22 | 40 | 0 | 0.5 |
| A9 | 4.11 | 81 | 0 | 3.5 |
| A10 | 1.1 | 89 | 0 | 1 |
>TRINITY_DN112018_c0_g2_i10 from sample A3 / Example spliced isoformGCAAAATATATGATTTCATTTGTCAAATAAAAACCCTTAAACCCTTCATTCTCATTTGTTCAATAAACCCTTAAACCCTTTATTCTCATTCCTGTCTTGTGGCTGTATCATCTCGTTCATTCACTTAGATATCCGGCACGATGGCGCAAGTCTGCCTTGGGATTTCTCCCATTCAGCGTTCTTCATGCCCAGTTTCGTGC
CCACAGACACTCATTCAATCCCTTCGTCGTTCCTCCATCTCCTCTTTTCCTTCTGCAAAACTTCCTCGCCCCCAGCTCTTCTTCTTGTCCAAACAAACAGCGTCCCCTGCCCCAGTCAGATGCAGCAGCGTCGGCGAATCGAACCGCAGACGTCGGCCCGACTACATCCCCAACAGGATCGACGACCCCTCCTATGTCCG
CATATTCGACACCACTCTCCGCGACGGCGAACAGTCACCGGGAGCCACCATGACAAGCAAGGAAAAACTCGACGTCGCCAGGCAGCTCGCGAAGCTGGGAGTCGATATAATCGAAGCCGGGTTCCCCATAGCCTCGCCCGATGACCTAGAAGCCGTGAGAAACATTGCCAAGGAGGTCGGCAACCACGTCGACGACGATG
GTTACGTGCCCGTCATCTGTGGACTGGCTAGGTGCAATAAAGCCGACATCGACGCCTCCTGGGAAGCCGTTCGACATGCCCTACGACCGAGAATTCATACTTTCATTGCCACCAGTGACATACACCTCAAGTATAAGTTGAAGAAGTCCCGGGACGAGGTTATCAGTATTGCCAGAGACATGGTGGCTTATGCCCGCAGC
CTTGGTTGCAACGATGTCGAATTCAGCCCCGAAGATGCCGGGAGGTCTGATCGTGAATTTCTTTACCAGATACTGGCGGAAGTGATTATGGCAGGGGCAACTACTTTAAATATTCCAGATACTGTGGGATACACATTACCTACAGAATTTGGTAAATTGATTGCCGACATTAAAGCCAACACTCCAGGCATTGAGAATGC
AATCATTTCAACACACTGCCAGAATGACCTTGGACTCTCTACAGCAAACACCTTGGCTGTGATATGAATCCAGGGTGCATATGCAGGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAGGGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCGTGGGAAAGAACAATTAGGGGGCC
TTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGGATGGAATGCTCAAGTTCAAAGGTACATATGAAATTATTTGTCCAGAAGATATTGGTTTAAAACGA
GCAGATGAATCTGGCATTGTTCTTGGAAAACTTAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTGGATGGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGAACAGAAGAAATCACTGTCTGATGAAGACTTGGAAGCTTTGACTTCAGATGAAGTTTTTCAACCCCG
AGTTATCTGGTCACTTGGTGATTTGCAGGTGAGTTGTGGTACATTGGGCCTTTCTACAGGGACTGTCAAACTAATAGGTCCAGATGGAGAAGAGCATGTTGGATGTGCTGTTGGTACTGGTCCAGTAGATGCTGCATACAAGGCTATTGATAGCATTATTAAGATACCTGTGACCCTTTTGGAGTATTCACTCACGTCTG
TTACAGAAGGTATTGATGCAATTGCATCTACAAGAGTCCTGATACGAGGGGATCAAGGTCTTTCTTCTACACATGCACTGACTGGAGCAACTGTTCAACGGACCTTCAGTGGAACGGGAGCTGGAATGGATATAGTAGTCTCCAGTGTCCGTGCATATATAGGTGCCCTGAACAAAATGATAGCATTTAAAGTTGGACCG
AAGAGTCGGGTGTGAATGAAGGCACCCAATATCACTGCATGAAATAAATCTTGTCATATGGACTTGATTTTGCATTATTGCTTATTTAAAAGCCTCTTATTTCGAAATTAATGATGGTTGTTTCTCTTCACATTAGGCTAGTAAAGTTTTCGAGGAAATATTTGTAAACAGATTAGTTTTCTTGTCAAAATATTTATATT
ATTGTTTTTGATGGGGGCAGTAGTTTGCTCTATTTTAAAACGCTTAGCTCTGTTTTGTCTACATGAAAAGAGCCTACCACTCTCATCCTCTTGGTATTAAACACTC
>TRINITY_DN112018_c0_g2_i11 from sample A3 / Example unspliced isoform:CAGAATGACCTTGGACTCTCTACCGCAAACACCTTGGCTgtgagattctattataattatgcttcgcaataaatagtctgaacttttgtagtatttggcattgatatctcatttcttatgctagGTGATATGAATCCAGGGTGCATATGCAGGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAG
GGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCGTGGGAAAGAACAATTAGGGGGCCTTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAG
GATGGAATGCTCAAGTTCAAAGGTACATATGAAATTATTTGTCCAGAAGATATTGGTTTAAAACGAGCAGATGAATCTGGCATTGTTCTTGGAAAACTTAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTGGATGGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGA
ACAGAAGAAATCACTGTCTGATGAAGACTTGGAAGCTTTGACTTCAGATGAAGTTTTTCAACCCCGAGTTATCTGGTCACTTGGTGATTTGCAGGTGAGTTGTGGTACATTGGGCCTTTCTACAGGGACTGTCAAACTAATAGGTCCAGATGGAGAAGAGCATGTTGGATGTGCTGTTGGTACTGGTCCAGTAGATGCTG
CATACAAGGCTATTGATAGCATTATTAAGATACCTGTGACCCTTTTGGAGTATTCACTCACGTCTGTTACAGAAGGTATTGATGCAATTGCATCTACAAGAGTCCTGATACGAGGGGATCAAGGTCTTTCTTCTACACATGCACTGACTGGAGCAACTGTTCAACGGACCTTCAGTGGAACGGGAGCTGGAATGGATATA
GTAGTCTCCAGTGTCCGTGCATATATAGGTGCCCTGAACAAAATGATAGCATTTAAAGTTGGACCGAAGAGTCGGGTGTGAATGAAGGCACCCAATATCACTGCATGAAATAAATCTTGTCATATGGACTTGATTTTGCATTATTGCTTATTTAAAAGCCTCTTATTTCGAAATTAATGATGGTTGTTTCTCTTCACATT
AGGCTAGTAAAGTTTTCGAGGAAATATTTGTAAACAGATTAGTTTTCTTGTCAAAATATTTATATTATTGTTTTTGATGGGGGCAGTAGTTTGCTCTATTTTAAAACGCTTAGCTCTGTTTTGTCTACATGAAAAGAGCCTACCACTCTCATCCTCTTGGTATTAAACACTC
Intron 5 GTGTGCTAAT ... TTGATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 6 | 1 | 4 |
| A2 | 54.55 | 5 | 3 | 6 |
| A3 | 100 | 0 | 0 | 7 |
| A4 | 35.12 | 5.6 | 0 | 3 |
| A5 | 44.29 | 7.7 | 0 | 6 |
| A6 | 0 | 3 | 0 | 0 |
| A7 | 0 | 6 | 0 | 0 |
| A8 | 13.33 | 13 | 0 | 2 |
| A9 | 12.5 | 7 | 0 | 1 |
| A10 | 0 | 10 | 0 | 0 |
>TRINITY_DN126826_c0_g1_i7 from sample A1 / Example spliced isoformGACAACTAAACCTATATACCAAATATTGTATTAAACGTATGATACCTATGATGTGTTACTAAAAGTGAGAAACAATTTGAAGGCAAATTCCCATGACTGTCCCTTTATTGGAAGGAATATGTTATCTCTGGAAGCTTCCTGTTATTATTGGTTTCTGTTTTAAGCTTTGCTTGTTATCTCTGGAAGCTTCCTATGTACTT
GCAAGTTTTTTCCAATATTTCAAATTTTCATAGATTATATATACATTTTTTAAATATTTATTACAGCAGAAGTATTTTTTGATAATTCAAATCTGAGAAAAGCATAAATTTTAAGATTGTTTTTGAAATGGGAAAGAACAATTAGGGGGCCTTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGT
ATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTGGATGGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGAACAGAAGAAAGTGGTC
ATGGCAATAAAATGTCGTGGGAAAGAACAATTAGGGGGCCTTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGGATGGAATGCTCAAGTTCAAAGGTAC
ATATGAAATTATTTGTCCAGAAGATATTGGTTTAAAACGAGCAGATGAATCTGGCATTGTTCTTGGAAAACTTAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTGGATGGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGAACAGAAGAAATCACTGTCTGATGAAG
ACTTGGAAGCTTTGACTTCAGATGAAGTTTTTCAACCCCGAGTTATCTGGTCACTTGGTGATTTGCAGGTGAGTTGTGGTACATTGGGCCTTTCTACAGGGACTGTCAAACTAATAGGTCCAGATGGAGAAGAGCATGTTGGATGTGCTGTTGGTACTGGTCCAGTAGATGCTGCATACAAGGCTATTGATAGCATTATT
AAGATACCTGTGACCCTTTTGGAGTATTCACTCACGTCTGTTACAGAAGGTATTGATGCAATTGCATCTACAAGAGTCCTGATACGAGGGGATCAAGGTCTTTCTTCTACACATGCACTGACTGGAGCAACTGTTCAACGGACCTTCAGTGGAACGGGAGCTGGAATGGATATAGTAGTCTCCAGTGTCCGTGCATATAT
AGGTGCCCTGAACAAAATGATAGCATTTAAAGTTGGACCGAAGAGTCGGGTGTGAATGAAGGCACCCAATATCACTGCATGAAATAAATCTTGTCATATGGACTTGATTTTGCATTATTGCTTATTTAAAAGCCTCTTATTTCGAAATTAATGATGGTTGTTTCTCTTCACATTAGGCTAGTAAAGTTTTCGAGGAAATA
TTTGTAAACAGATTAGTTTTCTTGTCAAAATATTTATATTATTGTTTTTGATGGGGGCAGTAGTTTGCTCTATTTTAAAACGCTTAGCTCTGTTTTGTCTACATGAAAAGAGCCTACCACTCTCATCCTCTTGGTATTAAACACTCTATGGCATCAACAATCTACAAGGCAGGGGTATGACTTTTCATAATGTTTCATAA
TTTTTTTTGTTTATGTTAAAGACCCCACCTTGCTTGTTTCAAGATTGCTTTGCGGGTTATGACTTTCAAGAAAGTTACAATTCCTGGACTATCTACTTTCTCAGAAATTTCATCCTTTGTATCACATTTTCGAAAAATATCCGAGCTATGCTTGCTTGGAACAGATACTGACCATTGTAATCTGGATGATAAGTTAAATG
AAATAGAGCTATTAATGGG
>TRINITY_DN126826_c0_g1_i2 from sample A1 / Example unspliced isoform:CCTTGAGGACACGGTTATTGCAGgtgtgctaattttaatattttaatttacattgtgatttgagcttcatttaagagcatgattatggtttcatcgatagtggttgaggacaaatttctagtgcgatacatcccttatcgattttctaagactagagtacaatttatcattattgattacagCTTGGCTATGAGTTGGAT
GGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGAACAGAAGAAAGTAAGAAATATTGTCTGCACCCCATATGCCAAAGAGTCTGCTGTGTTTGATTCCTTAGATTTTCAGTGAAATGATTTTCTGGACAGCATTTTTAATGAAAAGAACTTGAAAGAGGCAAAATGACAAGTGTAAAATTTGGACCT
TGAGGTAAAGGAAAGTGAATAATAATGGAAAGGGTACCACTTTGGACATGTCCGCATTGGCTTTTTATAAGATCGCAATACAATCATGCATTGAGCATATGCTATAACAAGTGTTGTACATTAGGACATGAACATTGAAGCTTGAAGTATGTAGTTAACTTATAGAATATCTTGAACCATGTCTTGTTTATCTAATGAGC
ATCTTAACAGTTCCAATCCTTGAGTTATCAATTTGGACTTGAGGTGTAACCTTGTCTAGTTGAATGTGCTCTATTCGATTTGGAGCTGTTTCTTTCTTGCTGATGTAAGAGTTGATGGTGCTTTGGAATGTCTGTGACATGCATCAATAGCATTTGGCCGCTATGTGTTGGGCATGCAAATTTGTTCTTTTTATAATCTA
TAGGCTAGAATGTTCTGTTATTTTGCAGTGAAATTATATTTGTAATGAACCAATCTGGTTCATCTGATACTAATGTCAAGAACAATAGTTCATATACACAAATATATCCAAGATAGGAATGAAAGATAGTTGAAATTCATATAGGAGAAATATATAATTGATAAATGAATAAGTGAGATGATTAATACACTGCC
Intron 6 GTGAGATTCT ... ATGAATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.62 | 42 | 4.9 | 4.2 |
| A2 | 16.9 | 41 | 2.7 | 9 |
| A3 | 13.35 | 45 | 5.3 | 7.6 |
| A4 | 8.53 | 28 | 3.8 | 3 |
| A5 | 1.39 | 15 | 2.2 | 0.2 |
| A6 | 7.53 | 50 | 3.9 | 4.7 |
| A7 | 5.3 | 83 | 5.6 | 5.8 |
| A8 | 6 | 46 | 2.8 | 3.8 |
| A9 | 6.46 | 96 | 7.2 | 7.6 |
| A10 | 4.55 | 97 | 7.8 | 5.6 |
>TRINITY_DN126826_c0_g1_i14 from sample A1 / Example spliced isoformCTTCATTCTCATTTCTGTCTTGTGGCTAAGAAGCAAAATATATGATTTCATTTGTCAAATAAAAACCCTTAAACCCTTCATTCTCATTTGTTCAATAAACCCTTAAACCCTTTATTCTCATTCCTGTCTTGTGGCTGTATCATCTCGTTCATTCACTTAGATATCCGGCACGATGGCGCAAGTCTGCCTTGGGATTTCTC
CCATTCAGCGTTCTTCATGCCCAGTTTCGTGCCCACAGACACTCATTCAATCCCTTCGTCGTTCCTCCATCTCCTCTTTTCCTTCTGCAAAACTTCCTCGCCCCCAGCTCTTCTTCTTGTCCAAACAAACAGCGTCCCCTGCCCCAGTCAGATGCAGCAGCGTCGGCGAATCGAACCGCAGACGTCGGCCCGACTACATC
CCCAACAGGATCGACGACCCCTCCTATGTCCGCATATTCGACACCACTCTCCGCGACGGCGAACAGTCACCGGGAGCCACCATGACAAGCAAGGAAAAACTCGACGTCGCCAGGCAGCTCGCGAAGCTGGGAGTCGATATAATCGAAGCCGGGTTCCCCATAGCCTCGCCCGATGACCTAGAAGCCGTGAGAAACATTGC
CAAGGAGGTCGGCAACCACGTCGACGACGACGGTTACGTGCCCGTCATCTGTGGACTGGCGAGGTGCAATAAAGCCGACATCGACGCCTCCTGGGAAGCCGTTCGACATGCCCTACGACCGAGAATTCATACTTTCATTGCCACCAGTGACATACACCTCAAGTATAAGTTGAAGAAGTCCCGGGACGAGGTTATCAGTA
TTGCCAGAGACATGGTGGCTTATGCCCGCAGCCTTGGTTGCAACGATGTCGAATTCAGCCCCGAAGACGCCGGGAGGTCTGATCGTGAATTTCTTTACCAGATACTGGCGGAAGTGATTATGGCAGGGGCAACTACTTTAAATATTCCAGATACTGTGGGATACACATTACCTACAGAATTTGGTAAATTGATTGCCGAC
ATTAAAGCCAACACTCCAGGCATTGAGAATGCAATCATTTCAACACACTGCCAGAATGACCTTGGACTCTCTACAGCAAACACCTTGGCTGGTGCATATGCAGGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAGGGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCGTGGGAA
AGAACAATTAGGGGGCCTTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGCATCCATCAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTG
GATGGAAAGGAATTGGATGATGTTTTTCGGCGGTTCAAAGCTGTTGCGGAACAGAAGAAAGTTGGGAAAGAACAATTAGGGGGCCTTTATACTGGAATCAATACAAAACAGATAACAATGGCGAGTAAGATGGTATCAGAGTTTACTGGAATGGTTGTACAACCACATAAGGCCATTGTTGGAGCTAATGCTTTTGCACA
TGAAAGTGGCATCCATCAGGATGGAATGCTCAAGTTCAAAGGTACATATGAAATTATTTGTCCAGAAGATATTGGTTTAAAACGAGCAGATGAATCTGGCATTGTTCTTGGAAAACTTAGTGGTCGCCATGCCTTGAGGACACGGTTATTGCAGCTTGGCTATGAGTTGGATGGAAAGGAATTGGATGATGTTTTTCGGC
GGTTCAAAGCTGTTGCGGAACAGAAGAAATCACTGTCTGATGAAGACTTGGAAGCTTTGACTTCAGATGAAGTTTTTCAACCCCGAGTTATCTGGTCACTTGGTGATTTGCAGGTGAGTTGTGGTACATTGGGCCTTTCTACAGGGACTGTCAAACTAATAGGTCCAGATGGAGAAGAGCATGTTGGATGTGCTGTTGGT
ACTGGTCCAGTAGATGCTGCATACAAGGCTATTGATAGCATTATTAAGGTATGCCAATTCTTTTAATATAATAAGAAGTTTGTGCATTGCCTTTTGTCTCATCTTAATCTTCGTTTTTTTCCTGTGTTTTTCTTCCTTTCTTAAAACATAGTTATGGATGTTGATGCCCGTGTTGTGCTATCCATGTTAGTTGCAGTCTA
CTTTTGTCTTTTTCCCATATATGTCAGTTTGATTTGCCTTTCAATAATCATTAATCTTCTGAGGTTTCATTCCTAGTTCATTCATTTTGTTAGACCCCAGACATAGCTTTATGCAATTTGCATGTTTTACACTGACCCCGGCTTTTTGTATATTCCCTGT
>TRINITY_DN126826_c0_g1_i5 from sample A1 / Example unspliced isoform:ATATAATCGAAGCCGGGTTCCCCATAGCCTCGCCCGATGACCTAGAAGCCGTGAGAAACATTGCCAAGGAGGTCGGCAACCACGTCGACGACGACGGTTACGTGCCCGTCATCTGTGGACTGGCGAGGTGCAATAAAGCCGACATCGACGCCTCCTGGGAAGCCGTTCGACATGCCCTACGACCGAGAATTCATACTTTC
ATTGCCACCAGTGACATACACCTCAAGTATAAGTTGAAGAAGTCCCGGGACGAGGTTATCAGTATTGCCAGAGACATGGTGGCTTATGCCCGCAGCCTTGGTTGCAACGATGTCGAATTCAGCCCCGAAGACGCCGGGAGGTCTGATCGTGAATTTCTTTACCAGATACTGGCGGAAGTGATTATGGCAGGGGCAACTAC
TTTAAATATTCCAGATACTGTGGGATACACATTACCTACAGAATTTGGTAAATTGATTGCCGACATTAAAGCCAACACTCCAGGCATTGAGAATGCAATCATTTCAACACACTGCCAGAATGACCTTGGACTCTCTACAGCAAACACCTTGGCTgtgagattctattataattatgcttcgcaataaatagtctgaactt
ttgtagtatttggcattgatatctcatttcttatgctaggtgatatgaatccagGGTGCATATGCAGGGGCAAGGCAAGTAGAGGTTACTGTTAATGGAATTGGTGAAAGAGCAGGGAATGCTTCACTGGAGGAGGTGGTCATGGCAATAAAATGTCG