sp|Q8L7I1|Y4193_ARATH ----> Uncharacterized protein At4g10930
Intron 1 GTAATCTTTC ... CCCTTCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56 | 22 | 22 | 34 |
| A2 | 24.87 | 31 | 7 | 13.5 |
| A3 | 34.97 | 28 | 10 | 20.1 |
| A4 | 50.78 | 14 | 15 | 13.9 |
| A5 | 25.58 | 16 | 11 | 0 |
| A6 | 29.54 | 1 | 0 | 0.9 |
| A7 | 40.98 | 10 | 3 | 10.9 |
| A8 | 60 | 2 | 1 | 5 |
| A9 | 4.76 | 10 | 0 | 1 |
| A10 | 32.68 | 21 | 4 | 16.4 |
>TRINITY_DN124483_c0_g1_i7 from sample A1 / Example spliced isoformGCCGGGAATGTAGGTATATATACGGACAAGAAGAAAAGGCCGCACGACCGGGAGCAGCAGGAGGTGCCGGCCAATTTTCAGGCATTCTTATTTCCTTTTAACACCCACAATGCAAGGGAAGGGCAGGGCAAAGTAAGGGGCAAGTCTTGTATTTTGCATGAACTCGGTGCACCATGATGGAGGACATACTCATTGGAGGA
ACTTCGATGCTCAATGATGCTGATGCTGAAACTGAAAGATGTGGCATCTGCATGGAAGAAGTCATTGACCGTGGGGTCCTTGACTGTTGTGATCACTGGTTTTGTTTTACTTGCATAGATAACTGGGCAATCATTACCAATCTTTGCCCCCTTTGTAAAGCTCAATTTGAGATCATTACATGTCTCCCTGTCTATGACAC
GATTGGTGGCAGTAATAAGCAAAACAATTCTTGTGCTGTTGGAGGAACAGAGAGGGATCAAAATTGGTATATCTATGGGAAGAACAATGCACTTTCCTTTCCATCATATTATATCGATGAAGATGCAATTGTCTGTTTGGATGGGGATGGCTGCAGAATACGGTCTGGAGTTACTACAGAAGAGGAGGAGTCTTCTTCTC
TTGATACTTCTGTTGCATGTGACTCATGTGATATCTGGTATCATGCTGTCTGTGTTGAATTCAACCCAGAGCATATGATTGAAAATACTTGGCTTTGCCCGAGGTAAAAGAAATAGAGGTGCAAAACAAATGGGGTGCTGAAAGATGCAATATCTACTTTCTGTCAAACTTCACCAGAAAAGGATGTTCAGAATTCCAAG
TCCAACAATGACACTGTACTGAAAAGCAAAGTGTTAGTCTGTGTTGCAGATGCAGGGGAGACAGCTCTTGTTGTTTCAATGGTTGAAGGTGAAAACTGTGGTCAAACTACCAAGGGAAAATTTGGAGAGGCTGCATCTGTTGAAGATAAACAAGATGCCAATAGAGTATCCATGCCATTATGCACTGATCACAGCAACTT
AATGCAACATCGAGAAGTTGAGGCAATAGACCAATTAGCAGATAATATAGTAACTATTAGTGCCTGCAAAGGTGGCTCAACATTTCCAGCCAGAAATGATTCAACATCACTGTTGGCTGATGACTGTAGTAGTCAGAGGCCTTCTATTTCAATGCCTGATAACAAAATCGACAGTGCAGATGCATTAGTGGGAAGTGAAA
CATCTCATTCTGTTGCAAATTTAGAGGACAAAGCCAAGCCTAGTTCCTTGGTTGAAAACAATGCATTTTGTGGACTTGCATCTGATAGTCATCATATTGTGAAATCCGCAACTGCAAAAGGTATGGAAGTAGATAGTGAAGTGCTTGTGCATTTTGGTAATGCTTCAAGTGGTAAAAGCTCAGATAAATCACATGCTGAA
ACAGGAGTTGATAAGCATGTAGAAAAGAATGACACTGCAGAGGAGAGTGTGATGGATGGAGAACCAGCTGAAATAAGCTGTGTGAGATTAAGTGCTGAAAAGAGGAAACTGGACCCAAAATGCAGAGATGCATTTGCCACAATGGATTCTTTGCAGTGTGGCCAAAGGCTTGGAAAGACTGCAAAGCGTAAGCATAATGA
AATCTCTGTTAAAAGTGCAAGGCCAAGTGGATGGAATGAGCAGATTCCCCTCCCATCATCGAAAGGTCGATGTGATGCTAATGAAGCAACTATTTCCAAAGATAATTTTGGACTTAAGAAAAAGTTGAGATCTAACAAGTTGCAAAGTCATACTCAAAGTGATGTTTTTTCACCTCAAGTTATGAGTCTTGTAAAGGGAC
TGGAATTTCCTGCTACTGCAAAGACACTGCAACATTCCTCCGCCATAAATACTTTAAGTAAAAATGATCATATAAATAGTGTGAGAATAAAGAAGATCATGACAAGACGAATGGATGAAAACAAGACATCCTGTTTAGTCCAGGAGCTAAGAAAAGAATTGAGAATAGCATCTGGTCATGACACCACAGATGGCACTGGT
AAGATTGATGCTTCTGATGAAAGACTTCTTGCAGCATTCAAGGCTGCAATGGTTAGAACACGTGGAAACGACAGCACTGATAGAACTAATAGATCTCATCTCAGAGTGAATCACCAACCACTCAAGAGAGGGAAGATACGGGAGAACCTGGCAAAGAAATTATATGGTACTGGAAATGGAAAACGTCGTGCTTGGGATAT
TGAATTCTGGAAAGAAAGGTGTGATAAAACAAAACAACTCAAGAAGGATGAGAATCCTGGTTCCATCAGGAACCTTTTGAAGAAGAGCCTTGATGCATGTTCTAAATCTCTAGAAACTGAGCAGACGTCTGAAACAGAGCTAGCTGATCCAATATTTTCAAGGTTATATATAGCAGATACCTCTTTATTCCCAAGAAAAG
ATGATATTAAGCCACTTTCTGCTTATTTAAATGCAGGAAATGTAGAAATAGGCAGATCTGATGCAGAATCAGAACTGGTGAAGGTAGAAAGAACATGCAATGGTTCCAATAACAAGTGTGAGATTCCAAGCTCTAAGATAGATGCTGTAGCTGGAAGTGTTCATCCAACTAAACAGTGCACAGACACTAAGAAGTTTAAT
TCCATCCTTGACAGTGCAACACTGCAAACAACAGTAGTACAACAGAAAACTGGCAACTCCAGCAATGTGAAACTTGATAAAAGGAAATGGGCTCTAGAGGTACTTGCCAGAAAGACAGGTAGCAATGAAAGGAAAACTGAATCTCTAGGAAAAATGGGTAGCTTTCCATTACTGATTCAACTACCTTCAGATATGATGCC
AATTTTGCCTCACAGTCGTCAAAGTCATGTCCCAACTGCAGTCCGGCAGATGCAACTGAATCGTCTTGTGGAACATTACTTGAAGAAAGCAGATTTGGAAACCATTCGAAGAACTGCAGAATCGGAATTTGCTGTTGCAGATGCAGTTAATAAGGAAAATGAAATTTATGAAAGGTCAAATTGTAAAAGTGTCTACATTA
ACCTTTGTGCACAGGCTTTGTCTCAGGAAGTATTTAACCATAGTGCTGTAGTAAAAGATGACAATTTTCATGGTTTGGGAACTGAGTTGAGAGATGATATTACTGAAGCACTCAGGGCTGCAGGACTTATTTCTGACTCCCCTCCTGGAAGCCCTTATCACATAACTGAAAATAATGTGGTTGAAACTGACAATGTAGCT
GAAAACAAAGACAATGTGATTGGTTGCATTGACAATATTCTTGATCTAGACTGTCATCCAGCTTTGGATATATATAGGGATTTTGAGTATGACTTGGAAGACTTGGAAATTCCTGGGCCTTCAAATGTATCAAAAATATCAAATAGTTCATTAATCCCTGACAATGCTGCCTCGAAAGTGAAAGTCATTCTCTCAACAGT
ACAACAGAGTAAACATTCTGCCGAGAAATTGCTTAATGGAGAAAAGGATAACAAATCATGCCTAGAGCAAGCAGATGATGGAGCACTAAAACCATTGGTAACGAGACCAGAATTTATACCTGACACAAAAGAAAATACCTTTCCATCTGTGGATGATATGCAAGTCAGAAGTGGAATAAAATGTTCAGCAACTCCAGATA
CACAAATAGAGAAAATCAATAATCTTGGATCTTCCTCATGTTCTGTTGACGACATTGAAAGCTATATGCCCAAAGTAGATCCAGGTAAAGTTAGTCAATGTGACCTTGGATTAAGTCTTGGTGATCATTCTGCCAACTTAATCGGTAGCCAAGATCAAGCATCTTGTGATAATCATAGTTCATATCAAGTGAAGAGGCAA
ACTAGCTTTGTTTCCTGCCCTTTGAAACAAGAGGTCGGTGCTTTTCTGTTAGTGAATGACCAAGTTAGTGGTGGTGGTATTAAATCAGGTTCAGCAAATTTGCTGTCTAAAGGCAGTATGGATGATACTAAGAGGGTGAATCCACAGAGTCAAGGAGATTCTGCAATTTCAAAGGAAGATAAACACAATAGTGATTCTGA
AATAGAGGAAAAGGTCTCTGTACCTGCCCATCCTAGAGGTAATGCTTCAAAGAAAGATTCCGAAGTGGGCAGCAAAAAGAAGCAACCTGCTATGAGAGATTTGGTCTGGAAGAAGGTGGAGGCTTACATTAAGGAGCATATAAGACCCCTCTGTAAAAGTGGGGTAGTTACAGTAGAGCAGTATCGATGGGCTGTTGGTA
AGACAGTTGAGAAGGTTATGAAATATCATCATAATGCAAAAAGTGCAGATTTCCTCATATTAGAGGGAAATAAAGTTAAAAAGCTCTCTGAACAATATTTGCAAGCTTTCAAGCAAAAGGAAACTCATTGATTTGTGCATATGTTCATACCATCTGTTTGAATATTCAAATAAAAAAATTCAAAAAGGAAGCTAAAGTTG
CTTTTCAATGTCCTTCAAGTCTTAAAGTTGTTAATGTGCGATGCATCTGTCAGTCATTTTGACTATAAATTTATACAAGAATCACTAAAAAATGAGCATGCTTGTTTGCATGCCGGGTTCTAACATCTTTGGCGGTGAATCAATTGTAAATTTTTGGCAGCCTTTTCATTTCATTTCTCTAATACATGTTAATTCATATT
AATAAATTGAGGACTGTTGCAGTGTTTTTTGAAAGATGAAATTAATTTAACTATGCCCATTACCTATTTATAACG
>TRINITY_DN124483_c0_g1_i9 from sample A1 / Example unspliced isoform:AACATTTGCAATTAATTTTTATTTACTTTTATGGATTGTTCTTTAATCCAAAACAGCTTGATTAAGGAAGAAAGCATACCGATCAGCTTTCGTCGTGCTGTTTTGACAGGATGACTATAGAATATTCTTATACAGCACATTTTAGCTGGTAGTTAATAAAACTAATCAAAAGATTAATAAATCTTGCAGAATGTTCATCA
TAGAATGCCTTTTGCTGTAGTTACTATTGGTCTGTTCTAACATTAATCTTGATTTTGGGGTAATCCATTTAACATTTTATGATGATAGAAGATTATCTTTCTAAACATACTATATCATCATGCTGTTTTTTGCAGGTGCAAAACAAATGGGGTGCTGAAAGATGCAATATCTACTTTCTGTCAAACTTCACCAGAAAAGG
ATGTTCAGAATTCCAAGTCCAACAATGACACTGTACTGAAAAGCAAAGTGTTAGTCTGTGTTGCAGATGCAGGGGAGACAGCTCTTGTTGTTTCAATGGTTGAAGGTGAAAACTGTGGTCAAACTACCAAGGGAAAATTTGGAGAGGCTGCATCTGTTGAAGATAAACAAGATGCCAATAGAGTATCCATGCCATTATGC
ACTGATCACAGCAACTTAATGCAACATCGAGAAGTTGAGGCAATAGACCAATTAGCAGATAATATAGTAACTATTAGTGCCTGCAAAGGTGGCTCAACATTTCCAGCCAGAAATGATTCAACATCACTGTTGGCTGATGACTGTAGTAGTCAGAGGCCTTCTATTTCAATGCCTGATAACAAAATCGACAGTGCAGATGC
ATTAGTGGGAAGTGAAACATCTCATTCTGTTGCAAATTTAGAGGACAAAGCCAAGCCTAGTTCCTTGGTTGAAAACAATGCATTTTGTGGACTTGCATCTGATAGTCATCATATTGTGAAATCCGCAACTGCAAAAGGTATGGAAGTAGATAGTGAAGTGCTTGTGCATTTTGGTAATGCTTCAAGTGGTAAAAGCTCAG
ATAAATCACATGCTGAAACAGGAGgtaatctttctagtgattgttattatgtttgtcagcttgtcttttaatgccatattaaatatttgacatagagaatgtcgtgagaagtattcaagagatgacaagtttgcctttccatcaagcaagaatctactagttttataaaatagtagtgaaaatttttcagcccattataa
aataactgaccttttcatcccttcttagTTGATAAGCATGTAGAAAAGAATGACACTGCAGAGGAGAGTGTGATGGATGGAGAACCAGCTGAAATAAGCTGTGTGAGATTAAGTGCTGAAAAGAGGAAACTGGACCCAAAATGCAGAGATGCATTTGCCACAATGGATTCTTTGCAGTGTGGCCAAAGGCTTGGAAAGAC
TGCAAAGCGTAAGCATAATGAAATCTCTGTTAAAAGTGCAAGGCCAAGTGGATGGAATGAGCAGATTCCCCTCCCATCATCGAAAGGTCGATGTGATGCTAATGAAGCAACTATTTCCAAAGATAATTTTGGACTTAAGAAAAAGTTGAGATCTAACAAGTTGCAAAGTCATACTCAAAGTGATGTTTTTTCACCTCAAG
TTATGAGTCTTGTAAAGGGACTGGAATTTCCTGCTACTGCAAAGACACTGCAACATTCCTCCGCCATAAATACTTTAAGTAAAAATGATCATATAAATAGTGTGAGAATAAAGAAGATCATGACAAGACGAATGGATGAAAACAAGACATCCTGTTTAGTCCAGGAGCTAAGAAAAGAATTGAGAATAGCATCTGGTCAT
GACACCACAGATGGCACTGGTAAGATTGATGCTTCTGATGAAAGACTTCTTGCAGCATTCAAGGCTGCAATGGTTAGAACACGTGGAAACGACAGCACTGATAGAACTAATAGATCTCATCTCAGAGTGAATCACCAACCACTCAAGAGAGGGAAGATACGGGAGAACCTGGCAAAGAAATTATATGGTACTGGAAATGG
AAAACGTCGTGCTTGGGATATTGAATTCTGGAAAGAAAGGTGTGATAAAACAAAACAACTCAAGAAGGATGAGAATCCTGGTTCCATCAGGAACCTTTTGAAGAAGAGCCTTGATGCATGTTCTAAATCTCTAGAAACTGAGCAGACGTCTGAAACAGAGCTAGCTGATCCAATATTTTCAAGGTTATATATAGCAGATA
CCTCTTTATTCCCAAGAAAAGATGATATTAAGCCACTTTCTGCTTATTTAAATGCAGGAAATGTAGAAATAGGCAGATCTGATGCAGAATCAGAACTGGTGAAGGTAGAAAGAACATGCAATGGTTCCAATAACAAGTGTGAGATTCCAAGCTCTAAGATAGATGCTGTAGCTGGAAGTGTTCATCCAACTAAACAGTGC
ACAGACACTAAGAAGTTTAATTCCATCCTTGACAGTGCAACACTGCAAACAACAGTAGTACAACAGAAAACTGGCAACTCCAGCAATGTGAAACTTGATAAAAGGAAATGGGCTCTAGAGGTACTTGCCAGAAAGACAGGTAGCAATGAAAGGAAAACTGAATCTCTAGGAAAAATGGGTAGCTTTCCATTACT
Intron 2 GTCGAGAACT ... TCATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.26 | 49 | 2 | 8 |
| A2 | 13.73 | 22 | 3 | 4 |
| A3 | 13.33 | 26 | 5 | 3 |
| A4 | 12.5 | 21 | 2 | 4 |
| A5 | 10.34 | 13 | 2 | 1 |
| A6 | 0 | 3 | 0 | 0 |
| A7 | 6.67 | 14 | 0 | 2 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 0 | 2 | 0 | 0 |
| A10 | 11.11 | 4 | 0 | 1 |
>TRINITY_DN113552_c2_g1_i14 from sample A2 / Example spliced isoformAGACGATTAACCAATGATTCCTCTCTCTCCTGATCAGGGTTCAGATTTTTGGGTTTGCTACCAAGGGGCAAGTCTTGTATTTTGCATGAACTCGGTGCACCATGATGGAGGACATACTCATTGGAGGAACTTCGATGCTCAATGATGCTGATGCTGAAACTGAAAGATGTGGCATCTGCATGGAAGAAGTCATTGACCGT
GGGGTCCTTGACTGTTGTGATCACTGGTTTTGTTTTACTTGCATAGATAACTGGGCAATCATTACCAATCTTTGCCCCCTTTGTAAAGCTCAATTTGAGATCATTACATGTCTCCCTGTCTATGACACGATTGGTGGCAGTAATAAGCAAAACAATTCTTGTGCTGTTGGAGGAACAGAGAGGGATCAAAATTGGTATAT
CTATGGGAAGAACAATGCACTTTCCTTTCCATCATATTATATCGATGAAGATGCAATTGTCTGTTTGGATGGGGATGGCTGCAGAATACGGTCTGGAGTTACTACAGAAGAGGAGGAGTCTTCTTCTCTTGATACTTCTGTTGCATGTGACTCATGTGATATCTGGTATCATGCTGTCTGTGTTGAATTCAACCCAGAGC
ATATGATTGAAAATACTTGGCTTTGCCCGAGGTAAAAGAAATAGAGGTGCAAAACAAATGGGGTGCTGAAAGATGCAATATCTACTTTCTGTCAAACTTCACCAGAAAAGGATGTTCAGAATTCCAAGTCCAACAATGACACTGTACTGAAAAGCAAAGTGTTAGTCTGTGTTGCAGATGCAGGGGAGACAGCTCTTGTT
GTTTCAATGGTTGAAGGTGAAAACTGTGGTCAAACTACCAAGGGAAAATTTGGAGAGGCTGCATCTGTTGAAGATAAACAAGATGCCAATAGAGTATCCATGCCATTATGCACTGATCACAGCAACTTAATGCAACATCGAGAAGTTGAGGCAATAGACCAATTAGCAGATAATATAGTAACTATTAGTGCCTGCAAAGG
TGGCTCAACATTTCCAGCCAGAAATGATTCAACATCACTGTTGGCTGATGACTGTAGTAGTCAGAGGCCTTCTATTTCAATGCCTGATAACAAAATCGACAGTGCAGATGCATTAGTGGGAAGTGAAACATCTCATTCTGTTGCAAATTTAGAGGACAAAGCCAAGCCTAGTTCCTTGGTTGAAAACAATGCATTTTGTG
GACTTGCATCTGATAGTCATCATATTGTGAAATCCGCAACTGCAAAAGGTATGGAAGTAGATAGTGAAGTGCTTGTGCATTTTGGTAATGCTTCAAGTGGTAAAAGCTCAGATAAATCACATGCTGAAACAGGAGGTAATCTTTCTAGTGATTGTTATTATGTTTGTCAGCTTGTCTTTTAATGCCATATTAAATATTTG
ACATAGAGAATGTCGTGAGAAGTATTCAAGAGATGACAAGTTTGCCTTTCCATCAAGCAAGAATCTACTAGTTTTATAAAATAGTAGTGAAATTTTTTCAGCCCATTATAAAATAACTGACCTTTTCATCCCTTCTTAGTTGATAAGCATGTAGAAAAGAATGACACTGCAGAGGAGAGTGTGATGGATGGAGAACCAGC
TGAAATAAGCTGTGTGAGATTAAGTGCTGAAAAGAGGAAACTGGACCCAAAATGCAGAGATGCATTTGCCACAATGGATTCTTTGCAGTGTGGCCAAAGGCTTGGAAAGACTGCAAAGCGTAAGCATAATGAAATCTCTGTTAAAAGTGCAAGGCCAAGTGGATGGAATGAGCAGATTCCCCTCCCATCATCGAAAGGTC
GATGTGATGCTAATGAAGCAACTATTTCCAAAGATAATTTTGGACTTAAGAAAAAGTTGAGATCTAACAAGTTGCAAAGTCATACTCAAAGTGATGTTTTTTCACCTCAAGTTATGAGTCTTGTAAAGGGACTGGAATTTCCTGCTACTGCAAAGACACTGCAACATTCCTCCGCCATAAATACTTTAAGTAAAAATGAT
CATATAAATAGTGTGAGAATAAAGAAGATCATGACAAGACGAATGGATGAAAACAAGACATCCTGTTTAGTCCAGGAGCTAAGAAAAGAATTGAGAATAGCATCTGGTCATGACACCACAGATGGCACTGGTAAGATTGATGCTTCTGATGAAAGACTTCTTGCAGCATTCAAGGCTGCAATGGTTAGAACACGTGGAAA
CGACAGCACTGATAGAACTAATAGATCTCATCTCAGAGTGAATCACCAACCACTCAAGAGAGGGAAGATACGGGAGAACCTGGCAAAGAAATTATATGGTACTGGAAATGGAAAACGTCGTGCTTGGGATATTGAATTCTGGAAAGAAAGGTGTGATAAAACAAAACAACTCAAGAAGGATGAGAATCCTGGTTCCATCA
GGAACCTTTTGAAGAAGAGCCTTGATGCATGTTCTAAATCTCTAGAAACTGAGCAGACGTCTGAAACAGAGCTAGCTGATCCAATATTTTCAAGGTTATATATAGCAGATACCTCTTTATTCCCAAGAAAAGATGATATTAAGCCACTTTCTGCTTATTTAAATGCAGGAAATGTAGAAATAGGCAGATCTGATGCAGAA
TCAGAACTGGTGAAGGTAGAAAGAACATGCAATGGTTCCAATAACAAGTGTGAGATTCCAAGCTCTAAGATAGATGCTGTAGCTGGAAGTGTTCATCCAACTAAACAGTGCACAGACACTAAGAAGTTTAATTCCATCCTTGACAGTGCAACACTGCAAACAACAGTAGTACAACAGAAAACTGGCAACTCCAGCAATGT
GAAACTTGATAAAAGGAAATGGGCTCTAGAGGTACTTGCCAGAAAGACAGGTAGCAATGAAAGGAAAACTGAATCTCTAGGAAAAATGGGTAGCTTTCCATTACTGATTCAACTACCTTCAGATATGATGCCAATTTTGCCTCACAGTCGTCAAAGTCATGTCCCAACTGCAGTCCGGCAGATGCAACTGAATCGTCTTG
TGGAACATTACTTGAAGAAAGCAGATTTGGAAACCATTCGAAGAACTGCAGAATCGGAATTTGCTGTTGCAGATGCAGTTAATAAGGAAAATGAAATTTATGAAAGGTCAAATTGTAAAAGTGTCTACATTAACCTTTGTGCACAGGCTTTGTCTCAGGAAGTATTTAACCATAGTGCTGTAGTAAAAGATGACAATTTT
CATGGTTTGGGAACTGAGTTGAGAGATGATATTACTGAAGCACTCAGGGCTGCAGGACTTATTTCTGACTCCCCTCCTGGAAGCCCTTATCACATAACTGAAAATAATGTGGTTGAAACTGACAATGTAGCTGAAAACAAAGACAATGTGATTGGTTGCATTGACAATATTCTTGATCTAGACTGTCATCCAGCTTTGGA
TATATATAGGGATTTTGAGTATGACTTGGAAGACTTGGAAATTCCTGGGCCTTCAAATGTATCAAAAATATCAAATAGTTCATTAATCCCTGACAATGCTGCCTCGAAAGTGAAAGTCATTCTCTCAACAGTACAACAGAGTAAACATTCTGCCGAGAAATTGCTTAATGGAGAAAAGGATAACAAATCATGCCTAGAGC
AAGCAGATGATGGAGCACTAAAACCATTGGTAACGAGACCAGAATTTATACCTGACACAAAAGAAAATACCTTTCCATCTGTGGATGATATGCAAGTCAGAAGTGGAATAAAATGTTCAGCAACTCCAGATACACAAATAGAGAAAATCAATAATCTTGGATCTTCCTCATGTTCTGTTGACGACATTGAAAGCTATATG
CCCAAAGTAGATCCAGGTAAAGTTAGTCAATGTGACCTTGGATTAAGTCTTGGTGATCATTCTGCCAACTTAATCGGTAGCCAAGATCAAGCATCTTGTGATAATCATAGTTCATATCAAGTGAAGAGGCAAACTAGCTTTGTTTCCTGCCCTTTGAAACAAGAGGTCGGTGCTTTTCTGTTAGTGAATGACCAAGTTAG
TGGTGGTGGTATTAAATCAGGTTCAGCAAATTTGCTGTCTAAAGGCAGTATGGATGATACTAAGAGGGTGAATCCACAGAGTCAAGGAGATTCTGCAATTTCAAAGGAAGATAAACACAATAGTGATTCTGAAATAGAGGAAAAGGTCTCTGTACCTGCCCATCCTAGAGGTAATGCTTCAAAGAAAGATTCCGAAGTGG
GCAGCAAAAAGAAGCAACCTGCTATGAGAGATTTGGTCTGGAAGAAGGTGGAGGCTTACATTAAGGAGCATATAAGACCCCTCTGTAAAAGTGGGGTAGTTACAGTAGAGCAGTATCGATGGGCTGTTGGTAAGACAGTTGAGAAGGTTATGAAATATCATCATAATGCAAAAAGTGCAGATTTCCTCATATTAGAGGGA
AATAAAGTTAAAAAGCTCTCTGAACAATATTTGCAAGCTTTCAAGCAAAAGGAAACTCATTGATTTGTGCATATGTTCATACCATCTGTTTGAATATTCAAATAAAAAAATTCAAAAAGGAAGCTAAAGTTGCTTTTCAATGTCCTTCAAGTCTTAAAGTTGTTAATGTGCGATGCA
>TRINITY_DN113552_c2_g1_i3 from sample A2 / Example unspliced isoform:ACCAGTTCCAATAACACGGGTTTGCTGTCATAAGATATTAAATTGTCTGTACAATTTCTTTCCACATAAACAAAAATTACATGAAATTCTAGCTTATACCTCTGAGATTTCTTATACGGTATTTTTATTTGTAGGCAATTGTCTGTTTGGATGGGGATGGCTGCAGAATACGGTCTGGAGTTACTACAGAAGAGGAGGAG
TCTTCTTCTCTTGATACTTCTGTTGCATGTGACTCATGTGATATCTGgtcgagaactaattcttgttttcctttattgatcaatttagaatgttctttttggttgtgtttgatgaatattcacaacctaatgtatgcagttttcggcattttgcatgtctaatagtctatgattaaatcaatcagcttattgcattcttt
gaattaatttgttaattggggattgaatatttttaaatagtcttttaaagagtatggatttcatgtgcagGTATCATGCTGTCTGTGTTGAATTCAACCCAGAGCATATGATTGAAAATACTTGGCTTTGCCCGAGGTAAAAGAAATAGAGGTGCAAAACAAATGGGGTGCTGAAAGATGCAATATCTACTTTCTGTCAA
ACTTCACCAGAAAAGGATGTTCAGAATTCCAAGTCCAACAATGACACTGTACTGAAAAGCAAAGTGTTAGTCTGTGTTGCAGATGCAGGGGAGACAGCTCTTGTTGTTTCAATGGTTGAAGGTGAAAACTGTGGTCAAACTACCAAGGGAAAATTTGGAGAGGCTGCATCTGTTGAAGATAAACAAGATGCCAATAGAGT
ATCCATGCCATTATGCACTGATCACAGCAACTTAATGCAACATCGAGAAGTTGAGGCAATAGACCAATTAGCAGATAATATAGTAACTATTAGTGCCTGCAAAGGTGGCTCAACATTTCCAGCCAGAAATGATTCAACATCACTGTTGGCTGATGACTGTAGTAGTCAGAGGCCTTCTATTTCAATGCCTGATAACAAAA
TCGACAGTGCAGATGCATTAGTGGGAAGTGAAACATCTCATTCTGTTGCAAATTTAGAGGACAAAGCCAAGCCTAGTTCCTTGGTTGAAAACAATGCATTTTGTGGACTTGCATCTGATAGTCATCATATTGTGAAATCCGCAACTGCAAAAGGTATGGAAGTAGATAGTGAAGTGCTTGTGCATTTTGGTAATGCTTCA
AGTGGTAAAAGCTCAGATAAATCACATGCTGAAACAGGAG
Intron 3 GTAAGTTTTC ... ATTGGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.42 | 39 | 6 | 14 |
| A2 | 19.05 | 34 | 2.7 | 8 |
| A3 | 28.57 | 35 | 5.7 | 14 |
| A4 | 11.11 | 16 | 1.3 | 2 |
| A5 | 30 | 7 | 3.3 | 3 |
| A6 | 37.5 | 5 | 0.7 | 3 |
| A7 | 8 | 23 | 1.3 | 2 |
| A8 | 9.38 | 29 | 0.7 | 3 |
| A9 | 17.19 | 53 | 4 | 11 |
| A10 | 17.65 | 28 | 0.7 | 6 |
>TRINITY_DN124483_c0_g1_i1 from sample A1 / Example spliced isoformAGCTTGATCACTTCTCAATTTGAATAATGATTTGGCACATATTGGCATATCTGGGTTTGGCTTATTTTAGTTCTATTGGTGTCTTATTCAGAGATGCATTTGCCACAATGGATTCTTTGCAGTGTGGCCAAAGGCTTGGAAAGACTGCAAAGCGTAAGCATAATGAAATCTCTGTTAAAAGTGCAAGGCCAAGTGGATGG
AATGAGCAGATTCCCCTCCCATCATCGAAAGGTCGATGTGATGCTAATGAAGCAACTATTTCCAAAGATAATTTTGGACTTAAGAAAAAGTTGAGATCTAACAAGTTGCAAAGTCATACTCAAAGTGATGTTTTTTCACCTCAAGTTATGAGTCTTGTAAAGGGACTGGAATTTCCTGCTACTGCAAAGACACTGCAACA
TTCCTCCGCCATAAATACTTTAAGTAAAAATGATCATATAAATAGTGTGAGAATAAAGAAGATCATGACAAGACGAATGGATGAAAACAAGACATCCTGTTTAGTCCAGGAGCTAAGAAAAGAATTGAGAATAGCATCTGGTCATGACACCACAGATGGCACTGGTAAGATTGATGCTTCTGATGAAAGACTTCTTGCAG
CATTCAAGGCTGCAATGGTTAGAACACGTGGAAACGACAGCACTGATAGAACTAATAGATCTCATCTCAGAGTGAATCACCAACCACTCAAGAGAGGGAAGATACGGGAGAACCTGGCAAAGAAATTATATGGTACTGGAAATGGAAAACGTCGTGCTTGGGATATTGAATTCTGGAAAGAAAGGTGTGATAAAACAAAA
CAACTCAAGAAGGATGAGAATCCTGGTTCCATCAGGAACCTTTTGAAGAAGAGCCTTGATGCATGTTCTAAATCTCTAGAAACTGAGCAGACGTCTGAAACAGAGCTAGCTGATCCAATATTTTCAAGGTTATATATAGCAGATACCTCTTTATTCCCAAGAAAAGATGATATTAAGCCACTTTCTGCTTATTTAAATGC
AGGAAATGTAGAAATAGGCAGATCTGATGCAGAATCAGAACTGGTGAAGGTAGAAAGAACATGCAATGGTTCCAATAACAAGTGTGAGATTCCAAGCTCTAAGATAGATGCTGTAGCTGGAAGTGTTCATCCAACTAAACAGTGCACAGACACTAAGAAGTTTAATTCCATCCTTGACAGTGCAACACTGCAAACAACAG
TAGTACAACAGAAAACTGGCAACTCCAGCAATGTGAAACTTGATAAAAGGAAATGGGCTCTAGAGGTACTTGCCAGAAAGACAGGTAGCAATGAAAGGAAAACTGAATCTCTAGGAAAAATGGGTAGCTTTCCATTACTGATTCAACTACCTTCAGATATGATGCCAATTTTGCCTCACAGTCGTCAAAGTCATGTCCCA
ACTGCAGTCCGGCAGATGCAACTGAATCGTCTTGTGGAACATTACTTGAAGAAAGCAGATTTGGAAACCATTCGAAGAACTGCAGAATCGGAATTTGCTGTTGCAGATGCAGTTAATAAGGAAAATGAAATTTATGAAAGGTCAAATTGTAAAAGTGTCTACATTAACCTTTGTGCACAGGCTTTGTCTCAGGAAGTATT
TAACCATAGTGCTGTAGTAAAAGATGACAATTTTCATGGTTTGGGAACTGAGTTGAGAGATGATATTACTGAAGCACTCAGGGCTGCAGGACTTATTTCTGACTCCCCTCCTGGAAGCCCTTATCACATAACTGAAAATAATGTGGTTGAAACTGACAATGTAGCTGAAAACAAAGACAATGTGATTGGTTGCATTGACA
ATATTCTTGATCTAGACTGTCATCCAGCTTTGGATATATATAGGGATTTTGAGTATGACTTGGAAGACTTGGAAATTCCTGGGCCTTCAAATGTATCAAAAATATCAAATAGTTCATTAATCCCTGACAATGCTGCCTCGAAAGTGAAAGTCATTCTCTCAACAGTACAACAGAGTAAACATTCTGCCGAGAAATTGCTT
AATGGAGAAAAGGATAACAAATCATGCCTAGAGCAAGCAGATGATGGAGCACTAAAACCATTGGTAACGAGACCAGAATTTATACCTGACACAAAAGAAAATACCTTTCCATCTGTGGATGATATGCAAGTCAGAAGTGGAATAAAATGTTCAGCAACTCCAGATACACAAATAGAGAAAATCAATAATCTTGGATCTTC
CTCATGTTCTGTTGACGACATTGAAAGCTATATGCCCAAAGTAGATCCAGGTAAAGTTAGTCAATGTGACCTTGGATTAAGTCTTGGTGATCATTCTGCCAACTTAATCGGTAGCCAAGATCAAGCATCTTGTGATAATCATAGTTCATATCAAGTGAAGAGGCAAACTAGCTTTGTTTCCTGCCCTTTGAAACAAGAGG
TCGGTGCTTTTCTGTTAGTGAATGACCAAGTTAGTGGTGGTGGTATTAAATCAGGTTCAGCAAATTTGCTGTCTAAAGGCAGTATGGATGATACTAAGAGGGTGAATCCACAGAGTCAAGGAGATTCTGCAATTTCAAAGGAAGATAAACACAATAGTGATTCTGAAATAGAGGAAAAGGTCTCTGTACCTGCCCATCCT
AGAGGTAATGCTTCAAAGAAAGATTCCGAAGTGGGCAGCAAAAAGAAGCAACCTGCTATGAGAGATTTGGTCTGGAAGAAGGTGGAGGCTTACATTAAGGAGCATATAAGACCCCTCTGTAAAAGTGGGGTAGTTACAGTAGAGCAGTATCGATGGGCTGTTGGTAAGACAGTTGAGAAGGTTATGAAATATCATCATAA
TGCAAAAAGTGCAGATTTCCTCATATTAGAGGGAAATAAAGTTAAAAAGCTCTCTGAACAATATTTGCAAGCTTTCAAGCAAAAGGAAACTCATTGATTTGTGCATATGTTCATACCATCTGTTTGAATATTCAAATAAAAAAATTCAAAAAGGAAGCTAAAGTTGCTTTTCAATGTCCTTCAAGTCTTAAAGTTGTTAA
TGTGCGATGCATCTGTCAGTCATTTTGACTATAAATTTATACAAGAATCACTAAAAAATGAGCATGCTTGTTTGCATGCCGGGTTCTAACATCTTTGGCGGTGAATCAATTGTAAATTTTTGGCAGCCTTTTCATTTCATTTCTCTAATACATGTTAATTCATATTAATAAATTGAGGACTGTTGCAGTGTTTTTTGAAA
GATGAAATTAATTTAACTATGCCCATTACCTATTTATAACG
>TRINITY_DN124483_c0_g1_i10 from sample A1 / Example unspliced isoform:AAATGGGTAGCTTTCCATTACTGgtaagttttcttcagtgcaggattatgtagggatttaatcttctgccagagtttaagttgctagttcatcaatacatgtcctatatttacatggtcacatgatgtttcatgttgtgagtggaaagctaatattttctgtcttttgtttgtgaattggagcagATTCAACTACCTTCA
GATATGATGCCAATTTTGCCTCACAGTCGTCAAAGTCATGTCCCAACTGCAGTCCGGCAGATGCAACTGAATCGTCTTGTGGAACATTACTTGAAGAAAGCAGATTTGGAAACCATTCGAAGAACTGCAGAATCGGAATTTGCTGTTGCAGATGCAGTTAATAAGGAAAATGAAATTTATGAAAGGTCAAATTGTAAAAG
TGTCTACATTAACCTTTGTGCACAGGCTTTGTCTCAGGAAGTATTTAACCATAGTGCTGTAGTAAAAGATGACAATTTTCATGGTTTGGGAACTGAGTTGAGAGATGATATTACTGAAGCACTCAGGGCTGCAGGACTTATTTCTGACTCCCCTCCTGGAAGCCCTTATCACATAACTGAAAATAATGTGGTTGAAACTG
ACAATGTAGCTGAAAACAAAGACAATGTGATTGGTTGCATTGACAATATTCTTGATCTAGACTGTCATCCAGCTTTGGATATATATAGGGATTTTGAGTATGACTTGGAAGACTTGGAAATTCCTGGGCCTTCAAATGTATCAAAAATATCAAATAGTTCATTAATCCCTGACAATGCTGCCTCGAAAGTGAAAGTCATT
CTCTCAACAGTACAACAGAGTAAACATTCTGCCGAGAAATTGCTTAATGGAGAAAAGGATAACAAATCATGCCTAGAGCAAGCAGATGATGGAGCACTAAAACCATTGGTAACGAGACCAGAATTTATACCTGACACAAAAGAAAATACCTTTCCATCTGTGGATGATATGCAAGTCAGAAGTGGAATAAAATGTTCAGC
AACTCCAGATACACAAATAGAGAAAATCAATAATCTTGGATCTTCCTCATGTTCTGTTGACGACATTGAAAGCTATATGCCCAAAGTAGATCCAGGTAAAGTTAGTCAATGTGACCTTGGATTAAGTCTTGGTGATCATTCTGCCAACTTAATCGGTAGCCAAGATCAAGCATCTTGTGATAATCATAGTTCATATCAAG
TGAAGAGGCAAACTAGCTTTGTTTCCTGCCCTTTGAAACAAGAGGTCGGTGCTTTTCTGTTAGTGAATGACCAAGTTAGTGGTGGTGGTATTAAATCAGGTTCAGCAAATTTGCTGTCTAAAGGCAGTATGGATGATACTAAGAGGGTGAATCCACAGAGTCAAGGAGATTCTGCAATTTCAAAGGAAGATAAACACAAT
AGTGATTCTGAAATAGAGGAAAAGGTCTCTGTACCTGCCCATCCTAGAGGTAATGCTTCAAAGAAAGATTCCGAAGTGGGCAGCAAAAAGAAGCAACCTGCTATGAGAGATTTGGTCTGGAAGAAGGTGGAGGCTTACATTAAGGAGCATATAAGACCCCTCTGTAAAAGTGGGGTAGTTACAGTAGAGCAGTATCGATG
GGCTGTTGGTAAGACAGTTGAGAAGGTTATGAAATATCATCATAATGCAAAAAGTGCAGATTTCCTCATATTAGAGGGAAATAAAGTTAAAAAGCTCTCTGAACAATATTTGCAAGCTTTCAAGCAAAAGGAAACTCATTGATTTGTGCATATGTTCATACCATCTGTTTGAATATTCAAATAAAAAAATTCAAAAAGGA
AGCTAAAGTTGCTTTTCAATGTCCTTCAAGTCTTAAAGTTGTTAATGTGCGATGCATCTGTCAGTCATTTTGACTATAAATTTATACAAGAATCACTAAAAAATGAGCATGCTTGTTTGCATGCCGGGTTCTAACATCTTTGGCGGTGAATCAATTGTAAATTTTTGGCAGCCTTTTCATTTCATTTCTCTAATACATGT
TAATTCATATTAATAAATTGAGGACTGTTGCAGTGTTTTTTGAAAGATGAAATTAATTTAACTATGCCCATTACCTATTTATAACG
Intron 4 GTAATGCGAT ... CTCATCCGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 9 | 12 | 15 |
| A2 | 76 | 3 | 8 | 11 |
| A3 | 93.94 | 1 | 10 | 21 |
| A4 | 83.33 | 1 | 4 | 6 |
| A5 | 66.67 | 5 | 6 | 14 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 100 | 0 | 5 | 5 |
| A8 | 33.33 | 2 | 1 | 1 |
| A9 | 100 | 0 | 1 | 2 |
| A10 | 60 | 1 | 2 | 1 |
>TRINITY_DN124483_c0_g1_i8 from sample A1 / Example spliced isoformTAGAGGTCCAATCCAGCTCACGTGAAAAGAATAACTGTCACTCAAATCGCCCTGGTATTTTCTGGCGAGGCTCAGTTCCACTCTTGGTTATTTTTTTGGAATTTCGACGATCTGGGTGGTCGGGTGGTCTTAAAATAGATAAAGCTCCTAGGATATAGTTCCATGGCATAGTTCCGCATTAAACGAGGTGAAACTACGAT
TCTACTGGTTTTTATAACCAGATCTAGAGAACAAATCGCCGAAAAAGCCGGGCGATTTGAGTGCCAGTCATCCCACGCCGTGTATTTATACATAATCGAGGAATTTTGTAATTTTCCCCCCCGCCGTCTTGAGCTTCTTTATTATTGTTGCAGGCGGTGGCTTTTTAGCTACGAACACATGTCATCAGATAACGACCACT
GAAAGGCGGTTTTAGATGATAGCTTTTTATTGCAGCAGTAATGTTTCGTTGCAAAGTTAACACAACAACTACTGATTGCAGTAAAGAGGGCGTTCGGGGCAAGTCTTGTATTTTGCATGAACTCGGTGCACCATGATGGAGGACATACTCATTGGAGGAACTTCGATGCTCAATGTTTGTGATTGTTTTGGCCAATCTAT
TATTTTGCACCTTAAGTTCATGCTTTGATGAAGTTGAACTTTACATTAGGCAGTGGGTATTAACATTTGATTCTGGGGTGTTGACATCCTTATTTTCAATCTGGATGTTACATACAAATCTCTGTTTCCTTTTATGTAATGTATTCTTATCTGGAGTATGTGATGGTCTCTATTCTCCTTGCCCAGTTGGATTACATACT
GGCAGTATCTGGTGC
>TRINITY_DN124483_c0_g1_i3 from sample A1 / Example unspliced isoform:TAGAGGTCCAATCCAGCTCACGTGAAAAGAATAACTGTCACTCAAATCGCCCTGGTATTTTCTGGCGAGGCTCAGTTCCACTCTTGGTTATTTTTTTGGAATTTCGACGATCTGGGTGGTCGGGTGGTCTTAAAATAGATAAAGCTCCTAGGATATAGTTCCATGGCATAGTTCCGCATTAAACGAGGTGAAACTACGAT
TCTACTGGTTTTTATAACCAGATCTAGAGAACAAATCGCCGAAAAAGCCGGGCGATTTGAGTGCCAGTCATCCCACGCCGTGTATTTATACATAATCGAGGAATTTTGTAATTTTCCCCCCCGCCGTCTTGAGCTTCTTTATTATTGTTGCAGGCGGTGGCTTTTTAGCTACGAACACATGTCATCAGATAACGACCACT
GAAAGGCGGTTTTAGATGATAGCTTTTTATTGCAGCAGTAATGTTTCGTTGCAAAGTTAACACAACAACTACTGATTGCAGTAAAGAGGGCGTTCGgtaatgcgatttccctgtaatttccctcatccgagGGGCAAGTCTTGTATTTTGCATGAACTCGGTGCACCATGATGGAGGACATACTCATTGGAGGAACTTCG
ATGCTCAATGATGCTGATGCTGAAACTGAAAGATGTGGCATCTGCATGGAAGAAGTCATTGACCGTGGGGTCCTTGACTGTTGTGATCACTGGTTTTGTTTTACTTGCATAGATAACTGGGCAATCATTACCAATCTTTGCCCCCTTTGTAAAGCTCAATTTGAGATCATTACATGTCTCCCTGTCTATGACACGATTGG
TGGCAGTAATAAGCAAAACAATTCTTGTGCTGTTGGAGGAACAGAGAGGTACTTTCCGTTTTAAGTTGATATCCCTCTACTTTTTCTTTTCCTTTCTATTTTCAGTATCTGGAGACTGGGTTATTCAGTTACAAATGTTGGCTTTTCTAAATGCAC