sp|O22255|ATL64_ARATH ----> RING-H2 finger protein ATL64

Intron 1 GTACTTGTAA ... CAGTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75	6	20	16
A2	100	0	4	3
A3	73.33	4	12	10
A4	54.55	5	6	6
A5	55.56	6	5	10
A6	76.92	6	21	19
A7	65	7	13	13
A8	53.57	13	11	19
A9	77.05	7	25	22
A10	64.1	7	11	14

>TRINITY_DN46233_c3_g1_i2 from sample A10 / Example spliced isoform

ATATAAACATGGATGACGGAGACGTGGAAATGGTGGATGCAGCCCAAGAAGAAGTTGAGCAACACTTGGTCTTAACATGTAATGGATGCCTAAAAACGGCACTGCTTGTCACAGGATGCGGGCATCTGTTTTGCCAATCCTGTGTGAATACCTTTGTCCACATTAATCGGCAATGCCCAGTATGCCAATTCCATGTCTGT
CAGAAGATGATTTTTCCAATTTATAACGGCAGTGCCAAAGAAGATTCTCCTGAGTGCGGTATATGTTTGGAGAAGGCTGCACCGCAGAGAACATGCATGCCCCAAGTTCTCCGTTCCGATTGGGTTCACCAGCACCACATCAGTAATGAATCAATGCAGTGGTTGATTGATAGCCATGGATTTGGCTCTCTAAATCGGGC
GAGGGTGAGGGTGCACTGCTCTTTGTCGCTAGCTACAACGCGCCCTCTGTGAGTCTGGCTTTTGCTTTCCCTAAAGCATTAGCTTCCTCGCACAGCCCACCTCGCCAATACCAAAAATCAAACAAAAATTACTTTTAATCATTTTATGTTTTGCAGGTCAAGTGTTATCATGTGTTCTTTTCTGAGTCTCCCCTGTTTAG
GTATTGCAAGAACTGTTGGAATCCAGAAGAATAAAGAAAGCATTTGGAGTCTCAAGCCAAAAGATTGCGGTGCAAGGGCTGGTAGCAATGAACCATTGGTTAAGAACCGCAACCCAGTAGCATCTAAGCCGTCAAAGTCACCCGAGGATCGCACCCGGCTTGGGCCACACCAACCCTTATGATGGCTGGATTTTTGGGTG
TCTCCTCCCAACTAGCTCACCCCTAAGGGGAATTGAACTCGGATCGCCTTGCTGACGAGACCCACACCTTAACTGAATGAGCTAGCGAGAATTGACTTTAATGTTAAGAGGACATGGGGGTGGGCTTTGATCCACTTATGTGTCCAAGGGCCACGAGATCATTTAATACAATCTCTCTGGGTGGAACCACATGTTCAACC
ACTACCTCAAGGTGCCCCCACGGCTCCAGGGTCGGCCCTCATTGGAATTGAACCTTGCCACTGGTGAAAAACTCCTCGCTCTTCACCAATGGATCCAACCCCTTTGGGTCTGTATGATAAGCGATCTTGATATTACATTTTTGGGTAAAATGAAGACATGGGTTTTGATGCCTGGGTTCACTATATGGTTATTTTCCTCC
TGGATTCACGAAAGCTCAAACAGAAGGGTCCGGTCAACGCGGTGGTCAGCACTGCACTAGCAAGGCAATTACGCACCAACAGAAATCTGCACCTCTTCTAGAACGCGTGACTGGGCATGTGCTTGACTGTTCCAGGGATCGAATTGGGTGTATTCAGATGCTAAATCAAGGATGTAATTAATCCATAGAGGATTGATAGC
TTAGTTTCATTTTGGTTTGTATAAATAGCTAGAAGAAGGGGAGACTGGAAAATGAATGTAATTTTGGCAAAGACGCTGTAATGACAAGAACTCTGTTCAGCAGATAATACAAGCAATCTTTTCCT

>TRINITY_DN46233_c3_g1_i3 from sample A10 / Example unspliced isoform:

ATATAAACATGGATGACGGAGACGTGGAAATGGTGGATGCAGCCCAAGAAGAAGTTGAGCAACACTTGGTCTTAACATGTAATGGATGCCTAAAAACGGCACTGCTTGTCACAGGATGCGGGCATCTGTTTTGCCAATCCTGTGTGAATACCTTTGTCCACATTAATCGGCAATGCCCAGTATGCCAATTCCATGTCTGT
CAGAAGATGATTTTTCCAATTTATAACGGCAGTGCCAAAGAAGATTCTCCTGAGTGCGGTATATGTTTGGAGAAGGCTGCACCGCAGgtacttgtaacaaaatgtggtcatttattttgtaaagactgtcttgagcactggttcgacacaaggcataattgtccagtttgcagAGAACATGCATGCCCCAAGTTCTCCGT
TCCGATTGGGTTCACCAGCACCACATCAGTAATGAATCAATGCAGTGGTTGATTGATAGCCATGGATTTGGCTCTCTAAATCGGGCGAGGGTGAGGGTGCACTGCTCTTTGTCGCTAGCTACAACGCGCCCTCTGTGAGTCTGGCTTTTGCTTTCCCTAAAGCATTAGCTTCCTCGCACAGCCCACCTCGCCAATACCAA
AAATCAAACAAAAATTACTTTTAATCATTTTATGTTTTGCAGGTCAAGTGTTATCATGTGTTCTTTTCTGAGTCTCCCCTGTTTAGGTATTGCAAGAACTGTTGGAATCCAGAAGAATAAAGAAAGCATTTGGAGTCTCAAGCCAAAAGATTGCGGTGCAAGGGCTGGTAGCAATGAACCATTGGTTAAGAACCGCAACC
CAGTAGCATCTAAGCCGTCAAAGTCACCCGAGGATCGCACCCGGCTTGGGCCACACCAACCCTTATGATGGCTGGATTTTTGGGTGTCTCCTCCCAACTAGCTCACCCCTAAGGGGAATTGAACTCGGATCGCCTTGCTGACGAGACCCACACCTTAACTGAATGAGCTAGCGAGAATTGACTTTAATGTTAAGAGGACA
TGGGGGTGGGCTTTGATCCACTTATGTGTCCAAGGGCCACGAGATCATTTAATACAATCTCTCTGGGTGGAACCACATGTTCAACCACTACCTCAAGGTGCCCCCACGGCTCCAGGGTCGGCCCTCATTGGAATTGAACCTTGCCACTGGTGAAAAACTCCTCGCTCTTCACCAATGGATCCAACCCCTTTGGGTCTGTA
TGATAAGCGATCTTGATATTACATTTTTGGGTAAAATGAAGACATGGGTTTTGATGCCTGGGTTCACTATATGGTTATTTTCCTCCTGGATTCACGAAAGCTCAAACAGAAGGGTCCGGTCAACGCGGTGGTCAGCACTGCACTAGCAAGGCAATTACGCACCAACAGAAATCTGCACCTCTTCTAGAACGCGTGACTGG
GCATGTGCTTGACTGTTCCAGGGATCGAATTGGGTGTATTCAGATGCTAAATCAAGGATGTAATTAATCCATAGAGGATTGATAGCTTAGTTTCATTTTGGTTTGTATAAATAGCTAGAAGAAGGGGAGACTGGAAAATGAATGTAATTTTGGCAAAGACGCTGTAATGACAAGAACTCTGTTCAGCAGATAATACAAGC
AATCTTTTCCT

Intron 2 GTGAGTATTC ... TGTCACTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	89.47	1	7	10
A2	100	0	2	12
A3	81.82	2	13	5
A4	15.79	8	3	0
A5	6.67	7	1	0
A6	10	9	0	2
A7	20	6	0	3
A8	0	9	0	0
A9	14.29	15	1	4
A10	13.04	10	1	2

>TRINITY_DN115671_c2_g4_i1 from sample A3 / Example spliced isoform

GGAAAATGGAATTTTCCGAGCCATTTTGTAACAAAGGCTATAATACGCCGTTTGGGGAAACCAAGTCATGCTGGCTGACATTTTATTGTTTCAGAAAACGTGAAACAAGAGAATGACAGAGATAAACATGGATGACGGAGACGTGGAAATGGTGGATGCAGCCCAAGAAGAAGTTGAGCAACACTTGGTCTTAACATGTA
ATGGATGCCTAAAAACGGCACTGCTTGTCACAGGATGCGGGCATCTGTTTTGCCAATCCTGTGTGAATACCTTCGTCCACATTAATCGGCAATGCCCAGTATGCCAATTCCATGTCTGTCAGAAGATGATTTTTCCAATTTATAACGGCAGTGCCAAAGAAGATTCTCCTGAGTGCGGTATATGTTTGGAGAAGGCTGCA
CCGCAGGTACTTGTAACAAAATGTGGTCATTTATTTTGTAAAGACTGTCTTGAGCACTGGTTCGACACAAGGCATAATTGTCCAGTTTGCAGAGAACATGCATGCCCCAAGTTCTCCGTTCCGATTGGGTTCACCAGCACCACATCAGTAATGAATCAATGCAGTGGTTGATTGATAGCCATGGATTTGGCTCTCTAAAT
CGGGCGAGGGTGAGGGTGCACTGCTCTTTGTCGCTAGCTACAACGCGCCCTCTGTGAGTCTGGCTTTTGCTTTCCCTAAAGCATTAGCTTCCTCGCACAGCCCACCTCGCCAATACCAAAAATCAAACAAAAATTACTTTTAATCATTTTATGTTTTGCAGGTCAAGTGTTATCATGTGTTCTTTTCTGAGTCTCCCCTG
TTTAGGTATTGCAAGAACTGTTGGAATCCAGAAGAATAAAGAAAGCATTTGGAGTCTCAAGCCAAAAGATTGCGGTGCAAGGGCTGGTAGCAATGAACCATTGGTTAAGAACCGCAACCCAGTAGCATCTAAGCCGTCAAAGTCACCCGGGGATCGCACCCGTACTGAGCCACACCAACCCTTATGATGGC

>TRINITY_DN115671_c2_g4_i2 from sample A3 / Example unspliced isoform:

GTGATTTTCTACTATTTTATTTTTTGATTCGTTTTCTCAACTCATGCATCTATTTGCTTTGTTCAATCTTCACAGTATTTTTATTTTAGTTTTTAATTTTAAAATCCTGTCATATAAAAGGTATTGCAAGAACTGTTGGAATCCAGAAGAATAAAGAAAGCATTTGGAGTCTCAAGCCAAAAGATTGCGGTGCAAGgtga
gtattccattatttgtatgatgaacaatcttattacttttcaacatcaccttgactagtactccattccctgtatgatgaacaatcttttttgtttgtttgttcgattgcctgtcactcagGGCTGGTAGCAATGAACCATTGGTTAAGAACCGCAACCCAGTAGCATCTAAGCCGTCAAAGTCACCCGGGGATCGCACC
CGTACTGAGCCACACCAACCCTTATGATGGC

Intron 3 GTGAGTCTGG ... TGTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	97.92	0.1	4	6
A2	100	0	1	0
A3	75.85	2.9	10	8
A4	72.92	1.9	6	4
A5	77.78	1	5	2
A6	76.92	3	11	9
A7	55.3	4.9	6	5.8
A8	77.78	4	18	10
A9	55.7	7.4	8	10
A10	69.23	4	14	4

>TRINITY_DN41770_c3_g1_i6 from sample A6 / Example spliced isoform

TGCAGCCCAAGAAGAAGTTGAGCAACACTTGGTCTTAACATGTAATGGATGCCTAAAAACGGCACTGCTTGTCACAGGATGCGGGCATCTGTTTTGCCAATCCTGTGTGAATACCTTTGTCCACATTAATCGGCAATGCCCAGTATGCCAATTCCATGTCTGTCAGAAGATGATTTTTCCAATTTATAACGGCAGTGCCA
AAGAAGATTCTCCTGAGTGCGGTATATGTTTGGAGAAGGCTGCACCGCAGGTACTTGTAACAAAATGTGGTCATTTATTTTGTAAAGACTGTCTTGAGCACTGGTTCGACACAAGGCATAATTGTCCAGTTTGCAGAGAACATGCATGCCCCAAGTTCTCCGTTCCGATTGGGTTCACCAGCACCACATCAGTAATGAAT
CAATGCAGTGGTTGATTGATAGCCATGGATTTGGCTCTCTAAATCGGGCGAGGGTGAGGGTGCACTGCTCTTTGTCGCTAGCTACAACGCGCCCTCTGTCAAGTGTTATCATGTGTTCTTTTCTGAGTCTCCCCTGTTTAGGTATTGCAAGAACTGTTGGAATCCAGAAGAATAAAGAAAGCATTTGGAGTCTCAAGCCA
AAAGATTGCGGTGCAAGACATTTTTGGGCAAAATGAAGACATGGGTTTTGATGCCTGGGTTCACTATATGGTTATTTTCCTCCTGGATTCACGAAAGCTCAAACAGAAGGGTCCGGTCAACGCGGTGGTCAGCACTGCACTAGCAAGGCAATTACGCACCAACAGAAATCTGCACCTCTTCTAGAACGCGTGACTGGGCA
TGTGCTTGACTGTTCCAGGGATCGAATTGGGTGTATTCAGATGCTAAATCAAGGATGTAATTAATCCATAGAGGATTGATAGCTTAGTTTCATTTTGGTTTGTATAAATAGCTAGAAGAAGGGGAGACTGGAAAATGAATGTAATTTTGGCAAATACGCTGTAATGACAAGAACTCTGTTCAGCAGATAATACAAGCAAT
CTTTTCCTGAATGGTGGTGTGTTAAGAAGTTCCTAGCATCTGAGTTTTATTGTAGCTTGCTTCTGGAAGAGGAAGGGCT

>TRINITY_DN41770_c3_g1_i8 from sample A6 / Example unspliced isoform:

TGCAGCCCAAGAAGAAGTTGAGCAACACTTGGTCTTAACATGTAATGGATGCCTAAAAACGGCACTGCTTGTCACAGGATGCGGGCATCTGTTTTGCCAATCCTGTGTGAATACCTTTGTCCACATTAATCGGCAATGCCCAGTATGCCAATTCCATGTCTGTCAGAAGATGATTTTTCCAATTTATAACGGCAGTGCCA
AAGAAGATTCTCCTGAGTGCGGTATATGTTTGGAGAAGGCTGCACCGCAGGTACTTGTAACAAAATGTGGTCATTTATTTTGTAAAGACTGTCTTGAGCACTGGTTCGACACAAGGCATAATTGTCCAGTTTGCAGAGAACATGCATGCCCCAAGTTCTCCGTTCCGATTGGGTTCACCAGCACCACATCAGTAATGAAT
CAATGCAGTGGTTGATTGATAGCCATGGATTTGGCTCTCTAAATCGGGCGAGGGTGAGGGTGCACTGCTCTTTGTCGCTAGCTACAACGCGCCCTCTgtgagtctggcttttgctttccctaaagcattagcttcctcgcacagcccacctcgccaataccaaaaatcaaacaaaaattacttttaatcattttatgttt
tgcagGTCAAGTGTTATCATGTGTTCTTTTCTGAGTCTCCCCTGTTTAGGTATTGCAAGAACTGTTGGAATCCAGAAGAATAAAGAAAGCATTTGGAGTCTCAAGCCAAAAGATTGCGGTGCAAGACATTTTTGGGCAAAATGAAGACATGGGTTTTGATGCCTGGGTTCACTATATGGTTATTTTCCTCCTGGATTCAC
GAAAGCTCAAACAGAAGGGTCCGGTCAACGCGGTGGTCAGCACTGCACTAGCAAGGCAATTACGCACCAACAGAAATCTGCACCTCTTCTAGAACGCGTGACTGGGCATGTGCTTGACTGTTCCAGGGATCGAATTGGGTGTATTCAGATGCTAAATCAAGGATGTAATTAATCCATAGAGGATTGATAGCTTAGTTTCA
TTTTGGTTTGTATAAATAGCTAGAAGAAGGGGAGACTGGAAAATGAATGTAATTTTGGCAAATACGCTGTAATGACAAGAACTCTGTTCAGCAGATAATACAAGCAATCTTTTCCTGAATGGTGGTGTGTTAAGAAGTTCCTAGCATCTGAGTTTTATTGTAGCTTGCTTCTGGAAGAGGAAGGGCT