NA ----> NA
Intron 1 GTCGGTAAAT ... ACATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 33.33 | 1 | 0 | 1 |
| A4 | 0 | 1 | 0 | 0 |
| A5 | 42.86 | 2 | 2 | 1 |
| A6 | 55.56 | 4 | 1 | 9 |
| A7 | 50 | 4 | 4 | 4 |
| A8 | 41.67 | 7 | 4 | 6 |
| A9 | 50 | 4 | 6 | 2 |
| A10 | 60 | 7 | 13 | 8 |
>TRINITY_DN43749_c0_g1_i5 from sample A7 / Example spliced isoformTCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAGTGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACA
ACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATGCACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGA
CGGTGGTCTGAATGAGCTGACTACTCTAGAAGGTGACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAGTGGGTGTGCTCGTTGGTACACTGGCGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGC
TTCGAGCCAAATGAAGATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTA
TATGTGGTTGAAGCTGTTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAAC
ACCTTTCCAATTCCATCCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGT
GTTTTTGTTATAATCGGTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTG
TATTTTTGATTTCCATTTCCTAATAGAATTCTGCAGCTTACAAAAAAAAAGAG
>TRINITY_DN43749_c0_g1_i3 from sample A7 / Example unspliced isoform:TCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAGTGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACA
ACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATGCACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGA
CGGTGGTCTGAATGAGCTGACTACTCTAGAAGGTGACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAGTGGGTGTGCTCGTTGgtcggtaaatatttatttattttctttctatcgacaattttgcaaaacttttccaaataaacttcgggttctttctttcgtccacatgtgcagGTACACTGG
CGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCCAAATGAAGATTGGATTTCTGGTTAGTCGGCTGCAAGATCTCCTCTTTCTTTTTGTAGAAATTTCTCGTCCAAGCTTAGTCATCGCAGAATTCATGCAGT
AGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGTTGAAGCTGTTGTACCAGC
TCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCCAATTCCATCCATGACTGG
TCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGTTATAATCGGTTTCTTAAT
ATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTGATTTCCATTTCCTAATAG
AATTCTGCAGCTTACAAAAAAAAAGAG
Intron 2 GTTAGTCGGC ... CATGCAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 1 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 100 | 0 | 1 | 1 |
| A4 | 100 | 0 | 1 | 1 |
| A5 | 100 | 0 | 2 | 2 |
| A6 | 25 | 6 | 2 | 2 |
| A7 | 26.83 | 15 | 3 | 8 |
| A8 | 46.15 | 7 | 3 | 9 |
| A9 | 41.18 | 5 | 4 | 3 |
| A10 | 21.57 | 20 | 6 | 5 |
>TRINITY_DN43749_c0_g1_i5 from sample A7 / Example spliced isoformTCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAGTGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACA
ACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATGCACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGA
CGGTGGTCTGAATGAGCTGACTACTCTAGAAGGTGACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAGTGGGTGTGCTCGTTGGTACACTGGCGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGC
TTCGAGCCAAATGAAGATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTA
TATGTGGTTGAAGCTGTTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAAC
ACCTTTCCAATTCCATCCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGT
GTTTTTGTTATAATCGGTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTG
TATTTTTGATTTCCATTTCCTAATAGAATTCTGCAGCTTACAAAAAAAAAGAG
>TRINITY_DN43749_c0_g1_i3 from sample A7 / Example unspliced isoform:TCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAGTGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACA
ACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATGCACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGA
CGGTGGTCTGAATGAGCTGACTACTCTAGAAGGTGACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAGTGGGTGTGCTCGTTGGTCGGTAAATATTTATTTATTTTCTTTCTATCGACAATTTTGCAAAACTTTTCCAAATAAACTTCGGGTTCTTTCTTTCGTCCACATGTGCAGGTACACTGG
CGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCCAAATGAAGATTGGATTTCTGgttagtcggctgcaagatctcctctttctttttgtagaaatttctcgtccaagcttagtcatcgcagaattcatgcagt
agGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGTTGAAGCTGTTGTACCAGC
TCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCCAATTCCATCCATGACTGG
TCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGTTATAATCGGTTTCTTAAT
ATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTGATTTCCATTTCCTAATAG
AATTCTGCAGCTTACAAAAAAAAAGAG
Intron 3 GTAAATATTT ... ACATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 33.33 | 1 | 0 | 1 |
| A4 | 0 | 1 | 0 | 0 |
| A5 | 33.33 | 2 | 1 | 1 |
| A6 | 55.56 | 4 | 1 | 9 |
| A7 | 42.86 | 4 | 2 | 4 |
| A8 | 39.13 | 7 | 3 | 6 |
| A9 | 46.67 | 4 | 5 | 2 |
| A10 | 58.82 | 7 | 12 | 8 |
>TRINITY_DN45060_c2_g1_i3 from sample A6 / Example spliced isoformAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAGTGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACAACATTTCAACTA
GTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATGCACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGACGGTGGTCTGAA
TGAGCTGACTACTCTAGAAGGTGACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAGTGGGTGTGCTCGTTGGTCGGTACACTGGCGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCC
AAATGAAGATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGT
TGAAGCTGTTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCC
AATTCCATCCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGT
TATAATCGGTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTG
ATTTCCATTTCCTAATAGAATTCTGCAG
>TRINITY_DN45060_c2_g1_i6 from sample A6 / Example unspliced isoform:GACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAGTGGGTGTGCTCGTTGGTCGgtaaatatttatttattttctttctatcgacaattttgcaaaacttttccaaataaacttcgggttctttctttcgtccacatgtgcagGTACACTGGCGCAGCCAGATTCATCTTATGAAAATCTTCAACA
TGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCCAAATGAAGATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAG
ATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGTTGAAGCTGTTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAA
GAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCCAATTCCATCCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTT
CCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGTTATAATCGGTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTG
ATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTGATTTCCATTTCCTAATAGAATTCTGCAG
Intron 4 GTGACTTCTC ... ACATGTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 1 | 3 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 33.33 | 1 | 0 | 1 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 1 | 1 |
| A6 | 47.37 | 5 | 0 | 9 |
| A7 | 60 | 3 | 5 | 4 |
| A8 | 42.86 | 6 | 3 | 6 |
| A9 | 40 | 3 | 2 | 2 |
| A10 | 61.54 | 5 | 8 | 8 |
>TRINITY_DN40698_c0_g4_i3 from sample A8 / Example spliced isoformTGTTGAACCAATGGAAATAGCGTTGTTCTTCAAGTGAGATAACCGTTTTGGTTGGCATATATTAATTCCAATGAACAGTCGGTAGGTTTTGAAAAATGGTCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAG
TGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACAACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATG
CACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGACGGTGGTCTGAATGAGCTGACTACTCTAGAAGGTACACTGGCGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTAC
ACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCCAAATGAAGATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTT
ATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGTTGAAGCTGTTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACC
ATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCCAATTCCATCCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTA
AAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGTTATAATCGGTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAG
TTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTGATTTCCATTTCCTAATAGAATTCTGCAGCTTACAAAAAAAAAGAGATAACACCCTGATCTTTCCAAT
>TRINITY_DN40698_c0_g4_i2 from sample A8 / Example unspliced isoform:TGTTGAACCAATGGAAATAGCGTTGTTCTTCAAGTGAGATAACCGTTTTGGTTGGCATATATTAATTCCAATGAACAGTCGGTAGGTTTTGAAAAATGGTCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAG
TGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACAACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATG
CACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGACGGTGGTCTGAATGAGCTGACTACTCTAGAAGgtgacttctccggttggccactatagtcggcatgttatgcaatgtctcgagtgggtgtgctcgttggtc
ggtaaatatttatttattttctttctatcgacaattttgcaaaacttttccaaataaacttcgggttctttctttcgtccacatgtgcagGTACACTGGCGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCC
AAATGAAGATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGT
TGAAGCTGTTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCC
AATTCCATCCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGT
TATAATCGGTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTG
ATTTCCATTTCCTAATAGAATTCTGCAGCTTACAAAAAAAAAGAGATAACACCCTGATCTTTCCAAT
Intron 5 GTGGGTGTGC ... ACATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 1 | 2 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 33.33 | 1 | 0 | 1 |
| A4 | 0 | 1 | 0 | 0 |
| A5 | 42.86 | 2 | 2 | 1 |
| A6 | 55.56 | 4 | 1 | 9 |
| A7 | 46.67 | 4 | 3 | 4 |
| A8 | 37.93 | 9 | 5 | 6 |
| A9 | 50 | 4 | 6 | 2 |
| A10 | 57.58 | 7 | 11 | 8 |
>TRINITY_DN43749_c0_g1_i1 from sample A7 / Example spliced isoformTCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAGTGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACA
ACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATGCACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGA
CGGTGGTCTGAATGAGCTGACTACTCTAGAAGGTGACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAGTACACTGGCGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCCAAATGAAG
ATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAGTAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGTTGAAGCTG
TTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGCCATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCCAATTCCAT
CCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGAGGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGTTATAATCG
GTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGGTAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTGATTTCCAT
TTCCTAATAGAATTCTGCAGCTTACAAAAAAAAAGAG
>TRINITY_DN43749_c0_g1_i6 from sample A7 / Example unspliced isoform:TCAGACTGCTACAAAAGAGTCTAATATAATGGTCAGACCGCACTAACAGCTTTTGGTGTACAGATCGCCAAGTGTATTGCTTGAAATGGCATCGAACTTAGTGATCTTTAATAATGGACTCCTTCATTCATAAATGATCGGTGGTCTTCTTGGTCGACAAATGCTTCGATCGACCGGATACTCAGTAACAGAAAGAAACA
ACATTTCAACTAGTGAATGCGAATTGTTGGATTCAATTTTACAGAAAGTCAGACGAGCACGCCAATCGTTACACCGACACGAGCAATGGATTTCTTCAATGCACTAACAATGATTATTCTTACAGTTTTATTTACGCCTCCTGTCTCGTACACTAGATGTTGCAGTGGCTATCCTCTTCGATCTTCGTTCTTCGTTCTGA
CGGTGGTCTGAATGAGCTGACTACTCTAGAAGGTGACTTCTCCGGTTGGCCACTATAGTCGGCATGTTATGCAATGTCTCGAgtgggtgtgctcgttggtcggtaaatatttatttattttctttctatcgacaattttgcaaaacttttccaaataaacttcgggttctttctttcgtccacatgtgcagGTACACTGG
CGCAGCCAGATTCATCTTATGAAAATCTTCAACATGCATCATCGCATGAGCAGTCTTTACACTTTCTTGCAGGTTCTTTTACGCGTCCATCGCTTCGAGCCAAATGAAGATTGGATTTCTGGTTCGATCCATCTTCCACGCACTGCTGCTGTCACCCAGAACAGAGGAAATGGCGCCAGATGTTATATTCAAGCAGATAG
TAAAGCACACACAGAGATATAATCAAGACAAGAGATCAGCTGAATGCATTCAACTATCTTATTCATTTTTGAAAGGTCTATTTATACATCTTATATGTGGTTGAAGCTGTTGTACCAGCTCCAAGTGTTTTTTTAACTAGATTATTACATAAGTAACTAATGACAACTAAGGAGCCAGAAGGGTCCCCTCCAACAGTAGC
CATGCTAGGCCCGGGGATAATTAGGCTGCGGCAAGAGGAGGTGAGTTTTTTCTTGCAACCATGTTGACCCGCGGAAAGGAACTCGACACGAACACCTTTCCAATTCCATCCATGACTGGTCCAATGGCAATTAAACGAGTTCGGGGTGAGAAGGCGGACACAGTTCTTCCATGGCACAAGGTGCACAAAGCAACGGAGGA
GGACAATTTCAATTGTACGATTCTTGAAGAGGTTCCCCCTCATAAAAATGCAACAAGCTAAAAAGGTTTGGGAAGCCACTTGTGACCTCCAGTGTTTTTGTTATAATCGGTTTCTTAATATTGTATATTTCAGATGTTTTTACATAGGATTTTATAGACATTGTTCCTCTCCTGGAAAGACTGTCTTTCCCTTCTCTGGG
TAGAGGTTTTGTAATCTTGGACACAACCATTTTGATCTCTTTAAATACTTAGGCTGGTAGTTCCACACACTAAGACGCCAGCTATTCCTTTTGTATTTTTGATTTCCATTTCCTAATAGAATTCTGCAGCTTACAAAAAAAAAGAG