NA ----> NA
Intron 1 GTAAATGTTT ... ATAATTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 1 | 2 | 1 |
| A2 | 57.14 | 6 | 8 | 0 |
| A3 | 50 | 2 | 2 | 0 |
| A4 | 33.33 | 4 | 2 | 3 |
| A5 | 50 | 6 | 6 | 3 |
| A6 | 57.14 | 21 | 28 | 4 |
| A7 | 45.45 | 30 | 25 | 8 |
| A8 | 54.39 | 26 | 31 | 6 |
| A9 | 50 | 17 | 17 | 1 |
| A10 | 66.67 | 9 | 18 | 10 |
>TRINITY_DN44542_c1_g1_i2 from sample A6 / Example spliced isoformGTGGATAAGAACACTATCTCGCATAGGTCCTGGAGGTTGTTGGGTCTGTTTCATCAGTTCGCAACAACTACAGAAAATTCGCCATGCAAGGAGGCATATTAGCCTTTCGAGCATTTACTGTGCGGAAATTTGATGGGCACCAGATAGTTACCACAGAGATCAAGGTGCCAGGAAACAAGTAGCCACAGAGACTTGAATTT
CACCATGCTAAAACATCAACTTCCTTTGATTTTTGTTACTATATTTTAGTCAAATTTTATTAGATTTTAGTTTAAACTTAATATTATCGACTGAGAATATTGTGTGGAGTTCGAGATAAGAAAGGAGGGAGCACCGAAATTTTTGTGGATGTAATCAATTACAAGAAGAGGTTGTTTGCCTATATAAAGACAAGCCATTC
GACATTTTTTTTGCATACTCTTTCCTTTGTAAACTCTGTTTTTCTTGAAGGATTAGAGAGACGGAGGCACTGCTTGCAACGTCAAGGGATGAATTATTTTATGGAAAGCAGTGACATGTTCATACTTGGTGTTCAGATTTTGGAAAACCGATTTGAAGACTTGTTGATTTATTGGGTTCTCTCTGCTGCTGTTTCTGCGT
CCCACCGCCACATCAAGAAGTTCAAGTTTCTTGGATCAAGATCTTGCACACGGGCTGATTGTTTACTGCAATTCGAGCCAGCGTTGCCTAATGTTGGCGATTGCAGAGCCGTCAGTTGCAGTGCACGAGGATGTCCGAGGCTTGGATGATTTCTTGACCGTGGCTGGAGTAGGGGCTGAGCCGAGTGGGGACCGAGCCGA
GCGGAGGCAGCATTAACAGGGTGTCGCGTTTCCTCAAGACGGGCTGCTGTTCTTGATCGTCGACCCCGTATATCACACGCGGATGCATCTGCTCCAGATCGGTTCTTGTCCACCGCCACATCTTGAAGTTCAAGTTTCTTGTTCTTGATCAAGAACTTGCACACGGCTGTATGTTACTGCAATCGATCCAGCGTTGCCCA
CGCGATTAGAAGATTAACACGACTAATGTTGGCGATTGCAGATGGGCGTCTCAGTTTCAATGCAGTGCACGCGGATGTCCGGAACAGGCTTGGAGACCGTGGCTGGAGTAGGGGCTGAGCCGAGTGGGGACAGAGCCGAATGACACACTCTCGGCAGTATGGCATAGTATGGCATGGAGACGCAGATTCAAGAACCTGAG
CAGAGGATGATGGACGGCGTGCCGTGGAGGCTTTGCTTAGGGTGTCTGGCCGTTTTCTTCATCAGTAGTTGCTGGCTGAGTTCGCCAGTTTGGGAGATCCA
>TRINITY_DN44542_c1_g1_i1 from sample A6 / Example unspliced isoform:GTGGATAAGAACACTATCTCGCATAGGTCCTGGAGGTTGTTGGGTCTGTTTCATCAGTTCGCAACAACTACAGAAAATTCGCCATGCAAGGAGGCATATTAGCCTTTCGAGCATTTACTGTGCGGAAATTTGATGGGCACCAGATAGTTACCACAGAGATCAAGGTGCCAGGAAACAAGTAGCCACAGAGACTTGAATTT
CACCATGCTAAAACATCAACTTCCTTTGATTTTTGTTACTATATTTTAGTCAAATTTTATTAGATTTTAGTTTAAACTTAATATTATCGACTGAGAATATTGTGTGGAGTTCGAGATAAGAAAGGAGGGAGCACCGAAATTTTTGTGGATGTAATCAATTACAAGAAGAGGTTGTTTGCCTATATAAAGACAAGCCATTC
GACATTTTTTTTGCATACTCTTTCCTTTGTAAACTCTGTTTTTCTTGAAGGATTAGAGAGACGGAGGCACTGCTTGCAACGTCAAGGGATGAATTATTTTATGGAAAGCAGTGACATGTTCATACTTGGTGTTCAGATTTTGGAAAACCGATTTGAAGACTTGTTgtaaatgtttttctccaagtaatagagggacctct
ctgacagtcattgatttttttgtggattttagtaaaatctgaaactgtgtttttcaatttgatttaatttctaataattgttacatttcaaagtgtattttggaatttacaattaattttcgattcattctattgactttaaattaattctaatgctgcataattaaagGATTTATTGGGTTCTCTCTGCTGCTGTTTCT
GCGTCCCACCGCCACATCAAGAAGTTCAAGTTTCTTGGATCAAGATCTTGCACACGGGCTGATTGTTTACTGCAATTCGAGCCAGCGTTGCCTAATGTTGGCGATTGCAGAGCCGTCAGTTGCAGTGCACGAGGATGTCCGAGGCTTGGATGATTTCTTGACCGTGGCTGGAGTAGGGGCTGAGCCGAGTGGGGACCGAG
CCGAGCGGAGGCAGCATTAACAGGGTGTCGCGTTTCCTCAAGACGGGCTGCTGTTCTTGATCGTCGACCCCGTATATCACACGCGGATGCATCTGCTCCAGATCGGTTCTTGTCCACCGCCACATCTTGAAGTTCAAGTTTCTTGTTCTTGATCAAGAACTTGCACACGGCTGTATGTTACTGCAATCGATCCAGCGTTG
CCCACGCGATTAGAAGATTAACACGACTAATGTTGGCGATTGCAGATGGGCGTCTCAGTTTCAATGCAGTGCACGCGGATGTCCGGAACAGGCTTGGAGACCGTGGCTGGAGTAGGGGCTGAGCCGAGTGGGGACAGAGCCGAATGACACACTCTCGGCAGTATGGCATAGTATGGCATGGAGACGCAGATTCAAGAACC
TGAGCAGAGGATGATGGACGGCGTGCCGTGGAGGCTTTGCTTAGGGTGTCTGGCCGTTTTCTTCATCAGTAGTTGCTGGCTGAGTTCGCCAGTTTGGGAGATCCA
Intron 2 GTAATAGAGG ... ATAATTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 1 | 2 | 1 |
| A2 | 50 | 6 | 6 | 0 |
| A3 | 50 | 2 | 2 | 0 |
| A4 | 28.57 | 5 | 2 | 3 |
| A5 | 37.5 | 10 | 6 | 2.8 |
| A6 | 47.83 | 24 | 22 | 3.6 |
| A7 | 34.73 | 37.6 | 20 | 7.6 |
| A8 | 44.25 | 37.8 | 30 | 5.6 |
| A9 | 45 | 11 | 9 | 1 |
| A10 | 56.67 | 13 | 17 | 10 |
>TRINITY_DN44542_c1_g1_i3 from sample A6 / Example spliced isoformGTGGATAAGAACACTATCTCGCATAGGTCCTGGAGGTTGTTGGGTCTGTTTCATCAGTTCGCAACAACTACAGAAAATTCGCCATGCAAGGAGGCATATTAGCCTTTCGAGCATTTACTGTGCGGAAATTTGATGGGCACCAGATAGTTACCACAGAGATCAAGGTGCCAGGAAACAAGTAGCCACAGAGACTTGAATTT
CACCATGCTAAAACATCAACTTCCTTTGATTTTTGTTACTATATTTTAGTCAAATTTTATTAGATTTTAGTTTAAACTTAATATTATCGACTGAGAATATTGTGTGGAGTTCGAGATAAGAAAGGAGGGAGCACCGAAATTTTTGTGGATGTAATCAATTACAAGAAGAGGTTGTTTGCCTATATAAAGACAAGCCATTC
GACATTTTTTTTGCATACTCTTTCCTTTGTAAACTCTGTTTTTCTTGAAGGATTAGAGAGACGGAGGCACTGCTTGCAACGTCAAGGGATGAATTATTTTATGGAAAGCAGTGACATGTTCATACTTGGTGTTCAGATTTTGGAAAACCGATTTGAAGACTTGTTGTAAATGTTTTTCTCCAAGATTTATTGGGTTCTCT
CTGCTGCTGTTTCTGCGTCCCACCGCCACATCAAGAAGTTCAAGTTTCTTGGATCAAGATCTTGCACACGGGCTGATTGTTTACTGCAATTCGAGCCAGCGTTGCCTAATGTTGGCGATTGCAGAGCCGTCAGTTGCAGTGCACGAGGATGTCCGAGGCTTGGATGATTTCTTGACCGTGGCTGGAGTAGGGGCTGAGCC
GAGTGGGGACCGAGCCGAGCGGAGGCAGCATTAACAGGGTGTCGCGTTTCCTCAAGACGGGCTGCTGTTCTTGATCGTCGACCCCGTATATCACACGCGGATGCATCTGCTCCAGATCGGTTCTTGTCCACCGCCACATCTTGAAGTTCAAGTTTCTTGTTCTTGATCAAGAACTTGCACACGGCTGTATGTTACTGCAA
TCGATCCAGCGTTGCCCACGCGATTAGAAGATTAACACGACTAATGTTGGCGATTGCAGATGGGCGTCTCAGTTTCAATGCAGTGCACGCGGATGTCCGGAACAGGCTTGGAGACCGTGGCTGGAGTAGGGGCTGAGCCGAGTGGGGACAGAGCCGAATGACACACTCTCGGCAGTATGGCATAGTATGGCATGGAGACG
CAGATTCAAGAACCTGAGCAGAGGATGATGGACGGCGTGCCGTGGAGGCTTTGCTTAGGGTGTCTGGCCGTTTTCTTCATCAGTAGTTGCTGGCTGAGTTCGCCAGTTTGGGAGATCCA
>TRINITY_DN44542_c1_g1_i1 from sample A6 / Example unspliced isoform:GTGGATAAGAACACTATCTCGCATAGGTCCTGGAGGTTGTTGGGTCTGTTTCATCAGTTCGCAACAACTACAGAAAATTCGCCATGCAAGGAGGCATATTAGCCTTTCGAGCATTTACTGTGCGGAAATTTGATGGGCACCAGATAGTTACCACAGAGATCAAGGTGCCAGGAAACAAGTAGCCACAGAGACTTGAATTT
CACCATGCTAAAACATCAACTTCCTTTGATTTTTGTTACTATATTTTAGTCAAATTTTATTAGATTTTAGTTTAAACTTAATATTATCGACTGAGAATATTGTGTGGAGTTCGAGATAAGAAAGGAGGGAGCACCGAAATTTTTGTGGATGTAATCAATTACAAGAAGAGGTTGTTTGCCTATATAAAGACAAGCCATTC
GACATTTTTTTTGCATACTCTTTCCTTTGTAAACTCTGTTTTTCTTGAAGGATTAGAGAGACGGAGGCACTGCTTGCAACGTCAAGGGATGAATTATTTTATGGAAAGCAGTGACATGTTCATACTTGGTGTTCAGATTTTGGAAAACCGATTTGAAGACTTGTTGTAAATGTTTTTCTCCAAgtaatagagggacctct
ctgacagtcattgatttttttgtggattttagtaaaatctgaaactgtgtttttcaatttgatttaatttctaataattgttacatttcaaagtgtattttggaatttacaattaattttcgattcattctattgactttaaattaattctaatgctgcataattaaagGATTTATTGGGTTCTCTCTGCTGCTGTTTCT
GCGTCCCACCGCCACATCAAGAAGTTCAAGTTTCTTGGATCAAGATCTTGCACACGGGCTGATTGTTTACTGCAATTCGAGCCAGCGTTGCCTAATGTTGGCGATTGCAGAGCCGTCAGTTGCAGTGCACGAGGATGTCCGAGGCTTGGATGATTTCTTGACCGTGGCTGGAGTAGGGGCTGAGCCGAGTGGGGACCGAG
CCGAGCGGAGGCAGCATTAACAGGGTGTCGCGTTTCCTCAAGACGGGCTGCTGTTCTTGATCGTCGACCCCGTATATCACACGCGGATGCATCTGCTCCAGATCGGTTCTTGTCCACCGCCACATCTTGAAGTTCAAGTTTCTTGTTCTTGATCAAGAACTTGCACACGGCTGTATGTTACTGCAATCGATCCAGCGTTG
CCCACGCGATTAGAAGATTAACACGACTAATGTTGGCGATTGCAGATGGGCGTCTCAGTTTCAATGCAGTGCACGCGGATGTCCGGAACAGGCTTGGAGACCGTGGCTGGAGTAGGGGCTGAGCCGAGTGGGGACAGAGCCGAATGACACACTCTCGGCAGTATGGCATAGTATGGCATGGAGACGCAGATTCAAGAACC
TGAGCAGAGGATGATGGACGGCGTGCCGTGGAGGCTTTGCTTAGGGTGTCTGGCCGTTTTCTTCATCAGTAGTTGCTGGCTGAGTTCGCCAGTTTGGGAGATCCA