sp|Q8W490|PEPK2_ARATH ----> Serine/threonine-protein kinase PEPKR2
Intron 1 GTATTTATTT ... GATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.25 | 27 | 53 | 7 |
| A2 | 52.53 | 75 | 83 | 3 |
| A3 | 39.42 | 63 | 41 | 12 |
| A4 | 48.28 | 45 | 42 | 13 |
| A5 | 37.84 | 69 | 42 | 10 |
| A6 | 53.28 | 64 | 73 | 19 |
| A7 | 49.72 | 89 | 88 | 32 |
| A8 | 54.3 | 85 | 101 | 44 |
| A9 | 60.23 | 68 | 103 | 16 |
| A10 | 55.36 | 25 | 31 | 8 |
>TRINITY_DN97582_c1_g1_i5 from sample A4 / Example spliced isoformGGGTAGTTTTATTGTTTTAAGCTGTTTGCTTATTCTGCAGATTGTATGGGTAGTTTTATTGTTTTAAGCTGTTTGCTTATTCTGCAGATTGTATGGGTAGTTTTATTGTTTTAAGCTATTTGCTTATGTCTGCAGATTGTGGGTAGTTTTATTGTTTTAAGCTATTTGCTTATGTCTGCAGATTGTATTGTTCCTCAAAC
ACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGA
TGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAG
TGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGC
CACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAG
CCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGT
GCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCT
CCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGA
>TRINITY_DN97582_c1_g1_i9 from sample A4 / Example unspliced isoform:ATTGAAACTAACAGTAACCAACAACAACGAAGTTCAAACTGTCTAACAACCAGTAAAACAGAAATGGCAACTGAAAAATGCAAATATTTTCTCAAACCATAAGTACCCAATGGAGTTTAGAAAATGCAACATTGTGGGTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGA
TTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCGGATGATTGGACAGAATTACAGAGATTGTATTGTTCCTCAAACACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACAT
TCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCA
CTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCA
TGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGCCACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATT
TTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGgtatttatttctaaattgtgttgtaatcaagtttgactcttctcactaaacatctagataagggcattatcatctttgctaaatatgtccatgaattgtgtttacgtatttcattaaccaacatttctttg
cattaaaagaggtctaccttcttaccttttatgggaagctctgcatgtattgcccctgaagtgttggcagggacatattcagaaaagcttgatgtgtagggggctggtgtcctcctacatgctctattgataggtttgttccttgagaaatttgttgaagccatatttgaggtaataaacctagcccaaagatgcaatta
tgcatacgaggcaaaaacctagcccaaagatgcaattatgcatatgagttttgttttgtgaccatatcttcttttcccgctgcaggttagctttggtttatgatttagactctaatgtaaggctgccagcaaacaggtcaaaaagaaaaaattaacatatctgcctgtcaaaggtgaatggtctgaattattccaatgtt
caaggaaatcctgcctgtcattggtgaatggtctgaattatgccaacatggagaagatgaatctttctccggacattattgttaaggtgtctcttacatccaaagcaaccaaagtttgatacccaatcagcaggaaaatatgaccttgtagatggtcttgcggctgctttttcacggataagattacctatgcccaaaaa
tagcagactctgcctatattccctgttcccttgcgcccataacataaaaatcagcttgtgtacaacattttgaaagtatgtcgttgctcattgttttttttaacaaaaacggttatgttttggattaagaatcagcgaagaatcgctggagaagttacaataacgtcgttgctcgttgttaccactcaacagtggtcatt
tactgactaggtgatttttatttactgatcttgcggctcaaaataagctacagattgttctaaaattggaaaaaatagatttcaattttctatacttaataagctccttgatttttcagGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCC
CCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTG
GCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATA
AGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGA
Intron 2 GTATTTATTT ... TTGGATTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.75 | 37 | 53 | 26.5 |
| A2 | 51.7 | 49 | 83 | 22 |
| A3 | 44.01 | 34 | 41 | 12.5 |
| A4 | 55.73 | 26 | 42 | 23.5 |
| A5 | 45.64 | 41 | 42 | 26.9 |
| A6 | 56.13 | 43 | 73 | 37 |
| A7 | 54.97 | 51 | 88 | 36.5 |
| A8 | 58.98 | 48 | 101 | 37 |
| A9 | 67.05 | 37 | 103 | 47.6 |
| A10 | 59.69 | 13 | 31 | 7.5 |
>TRINITY_DN111565_c0_g1_i3 from sample A2 / Example spliced isoformGTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
ATTGTATTGTTCCTCAAACACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGA
GGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAG
CAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAA
CATGTCCAGGAATGGATGCCACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGAATCAGCGAAGAATCGCTGGAGAAGTTACAATAACGTCGTTGCTCGTTGTTACCACTCAACAGTGGTC
ATTTACTGACTAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTG
GTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCCATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCC
CTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAA
GCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAA
ATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTATTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATATTTTGAAAGTGTATTTGGATTATTA
ATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTACTTGAACAATGCCTACACCTGCGCGGCA
>TRINITY_DN111565_c0_g1_i10 from sample A2 / Example unspliced isoform:GTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
GTATGTAATTTATTTTTCAAAATTTTATTTGGTCTTTTGGTATTTTTACTATCGTGTTTGTGTTGGGAAAAGGCGGGTCGAAAAATATTAGGACAAGCAGAAAAACATTAGGGTTGGGAGTGGGATCTGAGAAGAGAGTACCGGAAATCTTCTGGATTGGTTTTAACTGAAAATCTGAGAAGGGTTTATGATATGTTCCA
GGATATGAAAATGGGGTTTATTATTTTTGGCAGAGTTTTGTAATTCGATGTTTACTAAGATTTCTTTTCGCAAAAATAAGGTGGGAAAATCAGGGAACCTAATTGATTTTTTAAGGTCAATAGGTGTCCAAATTTCTTACTAGTAGTTTGGTTTTTTGGGTAACAATAGTTGAACAACGATGAAGTTCGATCCAATTCCC
CATATTTGTCTGTCTTTCCTTTTGAAAATTTCTTATAATTCGATTCAGATCATTTCGTATTTTCAATTCCATTAGTAAATATTCGGGATACGAGAAACATGAACAAGAAGGATGGGATAAATTAAATAGAATCAAGAACCGAGCGAAACTCATTCGGATGAACAAGAAGGATGAGATAATCTGATAGAATCAAGAACCGA
ACGAAATTCATTCGGAGGATGATGAGTTCCTGTAATTGTGTTTTAGCTACATTCACGGAACTGCCTTCTTGTATCATCAGGCCATCACCCATTAATACAGTTTAACATTCTCTGATTACAAATTTAGGGCAATGCCTATTGTACCATACCCAAGTTCTACTAATTCCCCTGCCATTATTTTGGCAAGACTGAATACGAGC
AACGCCATCCCCTACTTGAAGTACGGGGCCAAGAGAACCAACTCTTACTTTGTTATTATATTGTTTGACGCTGAATGTCTGTAGACTGTTCTCATCACAAATGATTTTGATTCGTTATTCTATTATAATGTCTATGCATTACATAGCAAACAACAGAAAAGGGTATCATGAACTTGTCATGTATTGGCATATAGTAGGCA
GTTTAGACTCTTTATTATGTGGTGCTTGTATGGGTAGTTTTATTGTTTTAAGCTGTTTGCTTATTCTGCAGATTGTATGGGTAGTTTTATTGTTTTAAGCTATTTGCTTATGTCTGCAGATTGTGGGTAGTTTTATTGTTTTAAGCTATTTGCTTATGTCTGCAGATTGTATTGTTCCTCAAACACTAATAGGAGTGCTT
GTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTT
CGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTT
TCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGCCACTCTCAGCATCAGG
CTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGgtatttatttctaaattgtgttgtaatcaagtttgactcttctcactaaacatctagataagggcattatcatctttgctaaatatgtccatgaattgtgttt
acgtatttcattaaccaacatttctttgcattaaaagaggtctaccttcttaccttttatgggaagctctgcatgtattgcccctgaagtgttggcagggacatattcagaaaagcttgatgtgtagggggctggtgtcctcctacatgctctattgataggtttgttccttgagaaatttgttgaagccatatttgagg
taataaacctagcccaaagatgcaattatgcatacgaggcaaaaacctagcccaaagatgcaattatgcatatgagttttgttttgtgaccatatcttcttttcccgctgcaggttagctttggtttatgatttagactctaatgtaaggctgccagcaaacaggtcaaaaagaaaaaattaacatatctgcctgtcaaa
ggtgaatggtctgaattattccaatgttcaaggaaatcctgcctgtcattggtgaatggtctgaattatgccaacatggagaagatgaatctttctccggacattattgttaaggtgtctcttacatccaaagcaaccaaagtttgatacccaatcagcaggaaaatatgaccttgtagatggtcttgcggctgcttttt
cacggataagattacctatgcccaaaaatagcagactctgcctatattccctgttcccttgcgcccataacataaaaatcagcttgtgtacaacattttgaaagtatgtcgttgctcattgttttttttaacaaaaacggttatgttttggattaagAATCAGCGAAGAATCGCTGGAGAAGTTACAATAACGTCGTTGC
TCGTTGTTACCACTCAACAGTGGTCATTTACTGACTAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTC
GACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCCATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCT
TCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTA
TGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGA
AAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTATTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATA
TTTTGAAAGTGTATTTGGATTATTAATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTACTTGAACAATGCCTACACCTGCGCGGCA
Intron 3 GTATTTATTT ... TACTGACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.7 | 27 | 53 | 34 |
| A2 | 41.86 | 75 | 83 | 25 |
| A3 | 33.68 | 63 | 41 | 23 |
| A4 | 43.4 | 45 | 42 | 27 |
| A5 | 31.34 | 69 | 42 | 21 |
| A6 | 45.76 | 64 | 73 | 35 |
| A7 | 41.83 | 89 | 88 | 40 |
| A8 | 48.33 | 85 | 101 | 58 |
| A9 | 52.45 | 68 | 103 | 47 |
| A10 | 42.53 | 25 | 31 | 6 |
>TRINITY_DN111565_c0_g1_i9 from sample A2 / Example spliced isoformGTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
ATTGTATTGTTCCTCAAACACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGA
GGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAG
CAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAA
CATGTCCAGGAATGGATGCCACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATC
AATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCC
ATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTC
CTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTG
TATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTA
TTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATATTTTGAAAGTGTATTTGGATTATTAATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTAC
TTGAACAATGCCTACACCTGCGCGGCA
>TRINITY_DN111565_c0_g1_i10 from sample A2 / Example unspliced isoform:GTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
GTATGTAATTTATTTTTCAAAATTTTATTTGGTCTTTTGGTATTTTTACTATCGTGTTTGTGTTGGGAAAAGGCGGGTCGAAAAATATTAGGACAAGCAGAAAAACATTAGGGTTGGGAGTGGGATCTGAGAAGAGAGTACCGGAAATCTTCTGGATTGGTTTTAACTGAAAATCTGAGAAGGGTTTATGATATGTTCCA
GGATATGAAAATGGGGTTTATTATTTTTGGCAGAGTTTTGTAATTCGATGTTTACTAAGATTTCTTTTCGCAAAAATAAGGTGGGAAAATCAGGGAACCTAATTGATTTTTTAAGGTCAATAGGTGTCCAAATTTCTTACTAGTAGTTTGGTTTTTTGGGTAACAATAGTTGAACAACGATGAAGTTCGATCCAATTCCC
CATATTTGTCTGTCTTTCCTTTTGAAAATTTCTTATAATTCGATTCAGATCATTTCGTATTTTCAATTCCATTAGTAAATATTCGGGATACGAGAAACATGAACAAGAAGGATGGGATAAATTAAATAGAATCAAGAACCGAGCGAAACTCATTCGGATGAACAAGAAGGATGAGATAATCTGATAGAATCAAGAACCGA
ACGAAATTCATTCGGAGGATGATGAGTTCCTGTAATTGTGTTTTAGCTACATTCACGGAACTGCCTTCTTGTATCATCAGGCCATCACCCATTAATACAGTTTAACATTCTCTGATTACAAATTTAGGGCAATGCCTATTGTACCATACCCAAGTTCTACTAATTCCCCTGCCATTATTTTGGCAAGACTGAATACGAGC
AACGCCATCCCCTACTTGAAGTACGGGGCCAAGAGAACCAACTCTTACTTTGTTATTATATTGTTTGACGCTGAATGTCTGTAGACTGTTCTCATCACAAATGATTTTGATTCGTTATTCTATTATAATGTCTATGCATTACATAGCAAACAACAGAAAAGGGTATCATGAACTTGTCATGTATTGGCATATAGTAGGCA
GTTTAGACTCTTTATTATGTGGTGCTTGTATGGGTAGTTTTATTGTTTTAAGCTGTTTGCTTATTCTGCAGATTGTATGGGTAGTTTTATTGTTTTAAGCTATTTGCTTATGTCTGCAGATTGTGGGTAGTTTTATTGTTTTAAGCTATTTGCTTATGTCTGCAGATTGTATTGTTCCTCAAACACTAATAGGAGTGCTT
GTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTT
CGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTT
TCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGCCACTCTCAGCATCAGG
CTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGgtatttatttctaaattgtgttgtaatcaagtttgactcttctcactaaacatctagataagggcattatcatctttgctaaatatgtccatgaattgtgttt
acgtatttcattaaccaacatttctttgcattaaaagaggtctaccttcttaccttttatgggaagctctgcatgtattgcccctgaagtgttggcagggacatattcagaaaagcttgatgtgtagggggctggtgtcctcctacatgctctattgataggtttgttccttgagaaatttgttgaagccatatttgagg
taataaacctagcccaaagatgcaattatgcatacgaggcaaaaacctagcccaaagatgcaattatgcatatgagttttgttttgtgaccatatcttcttttcccgctgcaggttagctttggtttatgatttagactctaatgtaaggctgccagcaaacaggtcaaaaagaaaaaattaacatatctgcctgtcaaa
ggtgaatggtctgaattattccaatgttcaaggaaatcctgcctgtcattggtgaatggtctgaattatgccaacatggagaagatgaatctttctccggacattattgttaaggtgtctcttacatccaaagcaaccaaagtttgatacccaatcagcaggaaaatatgaccttgtagatggtcttgcggctgcttttt
cacggataagattacctatgcccaaaaatagcagactctgcctatattccctgttcccttgcgcccataacataaaaatcagcttgtgtacaacattttgaaagtatgtcgttgctcattgttttttttaacaaaaacggttatgttttggattaagaatcagcgaagaatcgctggagaagttacaataacgtcgttgc
tcgttgttaccactcaacagtggtcatttactgactagGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTC
GACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCCATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCT
TCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTA
TGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGA
AAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTATTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATA
TTTTGAAAGTGTATTTGGATTATTAATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTACTTGAACAATGCCTACACCTGCGCGGCA
Intron 4 GTATGTAATT ... ATGTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 85 | 54 | 31 |
| A2 | 33.56 | 102 | 63 | 40.1 |
| A3 | 26.18 | 103 | 53 | 20.1 |
| A4 | 27.36 | 78.3 | 42 | 17 |
| A5 | 24.12 | 53 | 25 | 8.7 |
| A6 | 24.67 | 175 | 90 | 24.6 |
| A7 | 25.49 | 238.7 | 139 | 24.3 |
| A8 | 21.96 | 125 | 49 | 21.3 |
| A9 | 27.69 | 175 | 100 | 34 |
| A10 | 25.11 | 162 | 85 | 23.6 |
>TRINITY_DN111565_c0_g1_i9 from sample A2 / Example spliced isoformGTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
ATTGTATTGTTCCTCAAACACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGA
GGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAG
CAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAA
CATGTCCAGGAATGGATGCCACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATC
AATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCC
ATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTC
CTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTG
TATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTA
TTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATATTTTGAAAGTGTATTTGGATTATTAATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTAC
TTGAACAATGCCTACACCTGCGCGGCA
>TRINITY_DN111565_c0_g1_i4 from sample A2 / Example unspliced isoform:GTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
gtatgtaatttatttttcaaaattttatttggtcttttggtatttttactatcgtgtttgtgttgggaaaaggcgggtcgaaaaatattaggacaagcagaaaaacattagggttgggagtgggatctgagaagagagtaccggaaatcttctggattggttttaactgaaaatctgagaagggtttatgatatgttcca
ggatatgaaaatggggtttattatttttggcagagttttgtaattcgatgtttactaagatttcttttcgcaaaaataaggtgggaaaatcagggaacctaattgattttttaaggtcaataggtgtccaaatttcttactagtagtttggttttttgggtaacaatagttgaacaacgatgaagttcgatccaattccc
catatttgtctgtctttccttttgaaaatttcttataattcgattcagatcatttcgtattttcaattccattagtaaatattcgggatacgagaaacatgaacaagaaggatgggataaattaaatagaatcaagaaccgagcgaaactcattcggatgaacaagaaggatgagataatctgatagaatcaagaaccga
acgaaattcattcggaggatgatgagttcctgtaattgtgttttagctacattcacggaactgccttcttgtatcatcaggccatcacccattaatacagtttaacattctctgattacaaatttagggcaatgcctattgtaccatacccaagttctactaattcccctgccattattttggcaagactgaatacgagc
aacgccatcccctacttgaagtacggggccaagagaaccaactcttactttgttattatattgtttgacgctgaatgtctgtagactgttctcatcacaaatgattttgattcgttattctattataatgtctatgcattacatagcaaacaacagaaaagggtatcatgaacttgtcatgtattggcatatagtaggca
gtttagactctttattatgtggtgcttgtatgggtagttttattgttttaagctgtttgcttattctgcagattgtatgggtagttttattgttttaagctatttgcttatgtctgcagattgtgggtagttttattgttttaagctatttgcttatgtctgcagATTGTATTGTTCCTCAAACACTAATAGGAGTGCTT
GTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTT
CGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTT
TCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGCCACTCTCAGCATCAGG
CTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAA
GATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCCATCCCGAGTCCAAATAATAATCAGTTTCAAGATTT
CGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTT
ACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAG
GGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTATTATTATTATTATTGTATTTAAAAGATTTTTTTTT
TCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATATTTTGAAAGTGTATTTGGATTATTAATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTACTTGAACAATGCCTACACCTGCGCGGCA
Intron 5 GTGGTTTTTA ... GATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.35 | 31.5 | 13 | 7 |
| A2 | 18.38 | 24.4 | 8 | 3 |
| A3 | 24.82 | 22.7 | 3 | 12 |
| A4 | 26.83 | 27.3 | 7 | 13 |
| A5 | 28.39 | 21 | 6.7 | 10 |
| A6 | 29.09 | 34.2 | 9 | 19 |
| A7 | 40.4 | 37.2 | 18 | 32 |
| A8 | 42.12 | 53 | 32 | 44 |
| A9 | 30.38 | 42.6 | 20.3 | 16 |
| A10 | 56.79 | 5.7 | 7 | 8 |
>TRINITY_DN122837_c3_g1_i4 from sample A1 / Example spliced isoformATTTAATATTATCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGAATCAGCGAAGAATCGCTGGAGAAGTTACAATAACGTCGTTGCTCGTTGTTACCACTCAACAGTGGTCATTTACTGACTAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCA
AGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTT
GCAGATTCTGAGCAGACCAATTTTCCCCATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAG
AATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATT
CATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAG
TAAAAGATCAATTTTTTAATGAAATTTATTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGGGG
>TRINITY_DN122837_c3_g1_i1 from sample A1 / Example unspliced isoform:CTGCATGTATTGCCCCTGAAGTGTTGGCAGGGACATATTCAGAAAAGCTTGATGTGTAGGGGGCTGGTGTCCTCCTACATGCTCTATTGATAGGTTTGTTCCTTGAGAAATTTGTTGAAGCCATATTTGAGGTAATAAACCTAGCCCAAAGATGCAATTATGCATACGAGGCAAAAACCTAGCCCAAAGATGCAATTATG
CATATGAGTTTTGTTTTGTGACCATATCTTCTTTTCCCGCTGCAGGTTAGCTTTGGTTTATGATTTAGACTCTAATGTAAGGCTGCCAGCAAACAGGTCAAAAAGAAAAAATTAACATATCTGCCTGTCAAAGGTGAATGGTCTGAATTATTCCAATGTTCAAGGAAATCCTGCCTGTCATTGGTGAATGGTCTGAATTA
TGCCAACATGGAGAAGATGAATCTTTCTCCGGACATTATTGTTAAGGTGTCTCTTACATCCAAAGCAACCAAAGTTTGATACCCAATCAGCAGGAAAATATGACCTTGTAGATGGTCTTGCGGCTGCTTTTTCACGGATAAGATTACCTATGCCCAAAAATAGCAGACTCTGCCTATATTCCCTGTTCCCTTGCGCCCAT
AACATAAAAATCAGCTTGTGTACAACATTTTGAAAGTATGTCGTTGCTCATTGTTTTTTTTAACAAAAACGGTTATGTTTTGGATTAAGAATCAGCGAAGAATCGCTGGAGAAGTTACAATAACGTCGTTGCTCGTTGTTACCACTCAACAGTGGTCATTTACTGACTAGgtggtttttatttactgatcttgcggctca
aaataagctacagattgttctaaaattggaaaaaatagatttcaattttctatacttaataagctccttgatttttcagGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTAT
CTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCCATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGG
GGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTAC
TGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAAT
TTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTATTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAA
GCAAGATCTACCTAGTAAATATGGGGG
Intron 6 GTGGGAAAAT ... ATGTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.22 | 20 | 11 | 31 |
| A2 | 46.46 | 34 | 18 | 41 |
| A3 | 50 | 18 | 15 | 21 |
| A4 | 40.43 | 28 | 21 | 17 |
| A5 | 47.17 | 14 | 16 | 9 |
| A6 | 36.36 | 28 | 8 | 24 |
| A7 | 36.99 | 23 | 3 | 24 |
| A8 | 37.31 | 21 | 4 | 21 |
| A9 | 37.74 | 33 | 6 | 34 |
| A10 | 32.39 | 24 | 0 | 23 |
>TRINITY_DN111565_c0_g1_i6 from sample A2 / Example spliced isoformGTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
GTATGTAATTTATTTTTCAAAATTTTATTTGGTCTTTTGGTATTTTTACTATCGTGTTTGTGTTGGGAAAAGGCGGGTCGAAAAATATTAGGACAAGCAGAAAAACATTAGGGTTGGGAGTGGGATCTGAGAAGAGAGTACCGGAAATCTTCTGGATTGGTTTTAACTGAAAATCTGAGAAGGGTTTATGATATGTTCCA
GGATATGAAAATGGGGTTTATTATTTTTGGCAGAGTTTTGTAATTCGATGTTTACTAAGATTTCTTTTCGCAAAAATAAGATTGTATTGTTCCTCAAACACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTC
AAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAA
GAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAG
TACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGCCACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGT
GGGTTGCAAAAG
>TRINITY_DN111565_c0_g1_i11 from sample A2 / Example unspliced isoform:GTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
GTATGTAATTTATTTTTCAAAATTTTATTTGGTCTTTTGGTATTTTTACTATCGTGTTTGTGTTGGGAAAAGGCGGGTCGAAAAATATTAGGACAAGCAGAAAAACATTAGGGTTGGGAGTGGGATCTGAGAAGAGAGTACCGGAAATCTTCTGGATTGGTTTTAACTGAAAATCTGAGAAGGGTTTATGATATGTTCCA
GGATATGAAAATGGGGTTTATTATTTTTGGCAGAGTTTTGTAATTCGATGTTTACTAAGATTTCTTTTCGCAAAAATAAGgtgggaaaatcagggaacctaattgattttttaaggtcaataggtgtccaaatttcttactagtagtttggttttttgggtaacaatagttgaacaacgatgaagttcgatccaattccc
catatttgtctgtctttccttttgaaaatttcttataattcgattcagatcatttcgtattttcaattccattagtaaatattcgggatacgagaaacatgaacaagaaggatgggataaattaaatagaatcaagaaccgagcgaaactcattcggatgaacaagaaggatgagataatctgatagaatcaagaaccga
acgaaattcattcggaggatgatgagttcctgtaattgtgttttagctacattcacggaactgccttcttgtatcatcaggccatcacccattaatacagtttaacattctctgattacaaatttagggcaatgcctattgtaccatacccaagttctactaattcccctgccattattttggcaagactgaatacgagc
aacgccatcccctacttgaagtacggggccaagagaaccaactcttactttgttattatattgtttgacgctgaatgtctgtagactgttctcatcacaaatgattttgattcgttattctattataatgtctatgcattacatagcaaacaacagaaaagggtatcatgaacttgtcatgtattggcatatagtaggca
gtttagactctttattatgtggtgcttgtatgggtagttttattgttttaagctgtttgcttattctgcagattgtatgggtagttttattgttttaagctatttgcttatgtctgcagattgtgggtagttttattgttttaagctatttgcttatgtctgcagATTGTATTGTTCCTCAAACACTAATAGGAGTGCTT
GTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTT
CGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTT
TCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGCCACTCTCAGCATCAGG
CTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGGTATTTATTTCTAAATTGTGTTGTAATCAAGTTTGACTCTTCTCACTAAACATCTAGATAAGGGCATTATCATCTTTGCTAAATATGTCCATGAATTGTGTTT
ACGTATTTCATTAACCAACATTTCTTTGCATTAAAAGAGGTCTACCTTCTTACCTTTTATGGGAAGCTCTGCATGTATTGCCCCTGAAGTGTTGGCAGGGACATATTCAGAAAAGCTTGATGTGTAGGGGGCTGGTGTCCTCCTACATGCTCTATTGATAGGTTTGTTCCTTGAGAAATTTGTTGAAGCCATATTTGAGG
TAATAAACCTAGCCCAAAGATGCAATTATGCATACGAGGCAAAAACCTAGCCCAAAGATGCAATTATGCATATGAGTTTTGTTTTGTGACCATATCTTCTTTTCCCGCTGCAGGTTAGCTTTGGTTTATGATTTAGACTCTAATGTAAGGCTGCCAGCAAACAGGTCAAAAAGAAAAAATTAACATATCTGCCTGTCAAA
GGTGAATGGTCTGAATTATTCCAATGTTCAAGGAAATCCTGCCTGTCATTGGTGAATGGTCTGAATTATGCCAACATGGAGAAGATGAATCTTTCTCCGGACATTATTGTTAAGGTGTCTCTTACATCCAAAGCAACCAAAGTTTGATACCCAATCAGCAGGAAAATATGACCTTGTAGATGGTCTTGCGGCTGCTTTTT
CACGGATAAGATTACCTATGCCCAAAAATAGCAGACTCTGCCTATATTCCCTGTTCCCTTGCGCCCATAACATAAAAATCAGCTTGTGTACAACATTTTGAAAGTATGTCGTTGCTCATTGTTTTTTTTAACAAAAACGGTTATGTTTTGGATTAAGAATCAGCGAAGAATCGCTGGAGAAGTTACAATAACGTCGTTGC
TCGTTGTTACCACTCAACAGTGGTCATTTACTGACTAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATCAATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTC
GACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTCCTTCCGCTCTTCTCCCTCTTT
TATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTGTATGATCTTCTTTGCGTTTCC
CTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTATTATTATTATTATTGTATTTA
AAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATATTTTGAAAGTGTATTTGGATTATTAATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTACTTGAACAATGCCTACACCTGC
GCGGCA
Intron 7 GTATGTAATT ... CAAAAATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.33 | 85 | 54 | 20 |
| A2 | 32.23 | 102 | 63 | 34 |
| A3 | 25.63 | 103 | 53 | 18 |
| A4 | 30.97 | 78 | 42 | 28 |
| A5 | 26.9 | 53 | 25 | 14 |
| A6 | 25.21 | 175 | 90 | 28 |
| A7 | 25.31 | 239 | 139 | 23 |
| A8 | 21.88 | 125 | 49 | 21 |
| A9 | 27.54 | 175 | 100 | 33 |
| A10 | 25.17 | 162 | 85 | 24 |
>TRINITY_DN111565_c0_g1_i9 from sample A2 / Example spliced isoformGTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
ATTGTATTGTTCCTCAAACACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTCAAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGA
GGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAAGAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAG
CAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAGTACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAA
CATGTCCAGGAATGGATGCCACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGTGGGTTGCAAAAGGTACCCATCTCATGGCAGTATTTCTGCACCCTGATGCTCAAGTAGCATCCATTTCTGGACATGTCATC
AATAAGGCGTCCCCCGGAGCCTAGCTTCACCACAAGATACAAAGAATTTGTATCTTCATAATTGGGGATGACTGGGAACGTTCTGCATGCTCTCGACTTCTTGATGGACAATCTCTTTGGTATTTTTGGGTGAATTCTCGCAGGTCAGATCTTCTCCAATAGATTTGCTTTTGCAGATTCTGAGCAGACCAATTTTCCCC
ATCCCGAGTCCAAATAATAATCAGTTTCAAGATTTCGCTTCCAGCTGGTATGGGGAGAAGCATCAATACAGCGAAGCTTTCTCTTCAATCCTCTTCCCAGTGAATTAGGTCAATAATCCCTTTTGGAAGTAGGGGCAGTGGCTGGTGCTGTTACATGAGTGGAATTGCCGAGAATCCAAATCATCCCTCTTTTATTTCTC
CTTCCGCTCTTCTCCCTCTTTTATTGGCACTATTTACTGGGCGCCCTATTTACTGCTGCTTCGTGCCTCTTCCTTGATGAATTCATATCAACTATGGAATCCGGAAAATCTTTGACAAAGCCAGAATAGCTGTGTAAATAAGGGCTCCGTATTGATTTGAAATTTGAATATTCATCTTGAGTGGAGGTTTCTTTTTGTTG
TATGATCTTCTTTGCGTTTCCCTGTATTTTTCTAGGGACGTGGAGAAATAAATTTATGAAGCATAGGTGGAATATATGGTATATCTGGTAAAGAAAAAAAGCAAATTACAGGATAAAAAATAAAATTTATATAAAGAACATAAAACATTTCTAAAATGTAATTGGATTTTAGTAAAAGATCAATTTTTTAATGAAATTTA
TTATTATTATTATTGTATTTAAAAGATTTTTTTTTTCACTTTTTAATGTGTAAGCAAGATCTACCTAGTAAATATGGAGGAGGTTCATAAAATATTTTGAAAGTGTATTTGGATTATTAATGTCTAAAACGTGTACACATGCGACATTTTGACAAGTCTTCCAGTAAAGCTCCAAATACACTGTTAATAGTGTAGGCTAC
TTGAACAATGCCTACACCTGCGCGGCA
>TRINITY_DN111565_c0_g1_i6 from sample A2 / Example unspliced isoform:GTTTTCTCCGTGTTGATTTTTGAACGTCCTTTCAGTCATGCATTGCATCAGAGGCTCCCGGGATTTGTATTCTCTCACAAATTCTTACTTCCCCACGGTTGACACGCTGAATTTCTGTTTCAAATTGATTCTGCCATTGTATTTCTGCGACCCACAGACGTGAAATTCAGAAATTCAGATGATTGGACAGAATTACAGAG
gtatgtaatttatttttcaaaattttatttggtcttttggtatttttactatcgtgtttgtgttgggaaaaggcgggtcgaaaaatattaggacaagcagaaaaacattagggttgggagtgggatctgagaagagagtaccggaaatcttctggattggttttaactgaaaatctgagaagggtttatgatatgttcca
ggatatgaaaatggggtttattatttttggcagagttttgtaattcgatgtttactaagatttcttttcgcaaaaataagATTGTATTGTTCCTCAAACACTAATAGGAGTGCTTGTATTGCTACCGTTTGACAAGGAGACATTCTTCGCTTCTGGTGAGCAGCCCTGGATCATTTGGTTACTTTGTTTTTAGAGGGTTC
AAATGAAATCATTAAGAAGGAAGGGAAAAGGAGCAGCAGTGGATCGCACTGACTTAGAACATACAGTTTGGCACAGCGGAGGAAGGAAAAGATGAAGGATGAAGAATTGGGTGTTCGGCATTTGGGTCTGTTTACCTAACTCACTGGGAAGAGGATTAAAGAGAGTTTGGCTTTATTGATGCGGCTCACCAGACTGGCAA
GAAGCAAAGGCTGGAATCTGATTATTATTTGGGCCCAGAATTGCGATGAGGGAAATTGGTCTGATCAGAATCTGCAAGAGCAAGGCTACTGAAGAAGAGTGGGCCTACAAGATTTTCCCCAAATAGACCATAGAGATTGTCCATGGAGAAGTCGAGATCATACAGCACCTTTCTGGCCATCTTAGTGTTATCATACTGAG
TACCATGTATGATGTATGAAGATGCAGACTCTTTGAATCTTGTGAAAGGAGCTATGCTCCAGGGGATCTCTGATTGATAACATGTCCAGGAATGGATGCCACTCTCAGCATCAGGCTGCATAACTGATCAAAGATTTAATATTTTCTGAACCTGTACTGGATTGAACAGCTTAAGTTAGCTGATTTTCGCTTGTCCATGT
GGGTTGCAAAAG