sp|Q2QQS5|CCT14_ORYSJ ----> Cyclin-T1-4
Intron 1 GTAATGTTGC ... TGAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.4 | 27 | 7 | 6 |
| A2 | 31.51 | 25 | 3 | 20 |
| A3 | 27.27 | 16 | 3 | 9 |
| A4 | 12.82 | 17 | 1 | 4 |
| A5 | 41.18 | 5 | 2 | 5 |
| A6 | 14.29 | 3 | 0 | 1 |
| A7 | 20.75 | 21 | 1 | 10 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 33.33 | 10 | 6 | 4 |
| A10 | 11.63 | 19 | 1 | 4 |
>TRINITY_DN110132_c0_g1_i6 from sample A3 / Example spliced isoformAGTAATGTTAAGCGCTAGAGCAAAACTGGGCGGGTTGCTGGTTGTTCCTGCCCTGGTCGGCATGTTGGGGATCTTCAGGGCCATTCTTGCATCCTTCAAAGCCTTCGTGAGAAAGATATCGTTGATGGTTGCCAAGGGAGACCGCTTTGACATCCATGGACAGCTTACTGATACGGCAAAGGAACCAGAAACTAAAATGG
CAGATTCTCCATTGGATTCTACAATATTATCAAATACAATGATGCAAGATTGCTCTTGCGTTTCAGAATTGCATTCAATAAGAGGCTCATCTGCATTCTTAAGGATAACAGAGGTTTTCCTTGTGGATGAAGCTGCTACTGACAGACTGAATGATATGGTCTTTCAAGCACGATTGTTAAATAGAAATGTGACTGTGGTG
GACAATCCTAAAAGAAGTCCTCCAAAGGTTGCGTTCCCATATGAAGAAGACACTGCTTCTATGGAAGACATGAATTTGATGAAGGAAATGATTGCACTGGGCCTTCCTAGCTCCTTCTCTACAGGCTCTAAGGGAGAACATTTGAGAAGTACAACAAGGAACAGAAATTCTACAAAACAAAGGGGATCTGAACAAACTCA
AATTAGAGATAGGGATTCACTGTACCTGCAGGCAGAGGTTTGTAATGAGGGTGTCATTGATGAAATAGTTACTTATCCAAATTCTGCTTCTATTCTGGCAGAATTATCTACAAAGGATGCAGCCACTCCAGTTGAAATAGTAAGTAATGGAATAATTGCAAATTGTGCTTTAACTTATCCAACTGACACCTCTTTGTTAA
CTGAAAGTATTATTTCAAGCAAGGATGAGATGGCATCAATTCAAAACTGCAATTTGGATGATGTCAAAAATAATTTGCTGGTTAGTGACAAAACTGAAATGGAAATTTCAGTGGAGGAGATGCATGAAGTAGAGGTGGGAATAACAGACCGAGCAGAAAATCTTGACAACAGACTAAATGAGCAGTATGAATTACAGATG
ACATATTGCGTACAGAGTAGAGCTGAAGTGTACAACATTGGTGTCAAATCAGAGGTTTGTACTGAGGGTGTTATTGATGAATTAGTTACTTATCCAGATTCTGCTTCTATTCTGGCAGAATTATCTACAAAGGATGAAGACACTCCAAATGAAATAGCAAGTAATGAAATAAAGCCAAATTGTGCTTTAATTTGTCAAAC
TGATAGCACTTTGTTAACCGAAAGTATTTTATCAAGCAATGGTGTGATGGCATCAATTCAAACGAGCAATTTGGATGATGTTGAAAATACTCTACTGGTTGGTGACAAAGCTGAAATGGAAGTTTCAGTGGATGAGATGCTTGAAGTAGAGGTGGGAAGAGCAGACCGAGCAGAAAAGCTTGATAATGGACTGAATGAGC
AGCATGAATTACAGATGACATGTTCTGTACAAAGTAGAGCTGAAGTATACAACATTGGTGCCAATTCAGAGATTGATGGCACTGTGGAGAATGATAGATCTAAACTTTCTTGTGCTTCCCATGGGCTAGAAATTTCTCAGCCTGAAAATTCTTGCCTTTCCAATACTGATCCTGTCGCTGAACTGCACAACATTGGCACG
GGTAATTGGAAACCTATTTGGGACACTTATTACCAGAGGTATTATTACTGCAATTATGATACATGGGAAACATCATGGGACCCTCCAGGGGTGGAACTGCAGAAAGATCCTCCTAGAATTGATGGAACTGATAACTGCATTACGGGAGAGCAGGTGATATGTAGAACAAGTAGCAAAAGTTATGATGGATGTTCAGGATC
AACATTGACAGTTAAAGAAGATGCTACACTGGTGTATGAGAATTGCAGTGAAATGCTTCAAGAAACTGAAGATAATGCATTAAGCAAGCTTGAACTTGAAGCATGTGAGGTGCCAAATATGCTGACTTACAGTATGGAATCTGAACAATTCAGTGGGAATGGTGCTTGTAATGGAGAGAACCTTTCAGCAGGCAATATTC
TTGAAGACAGAGCTGATAACAAGGAATGGAAGGATTTAACAGAAAACAGCAACCCTCTTAAAGATGTGGAGATCCTTTGCTCAAAGGATATTTCACAAGGTTTAGAACAGTTGGGCAATATGTGCTCATCCAAGGGCTCAGAGTTTGCGGGTCTGTTGGAGGAATCCCTGGATGCAATAGAGAGTTTACAAGTTTATTCA
CAAGCATGTGGTACTCATACTTGGTTTGATGACGATGGTAATATTAAAGATGAAAAGACTGTACTACCAGTAACTATGTATGTGCATGCCCAGGAGAGTGGGGCTTACAATGGACATAGATGTGGTACTCATATTTTGTTTGATGACGATGGTAAAATTAAGAATGAACATACTTCACAACCAATAACTACATGCATGCA
TTCTCAGGAGAGCAAGACTTACATTGGACATAGTTGTGGTAGTCATATTTTGTTTGATGACGATGGTAACATTAAGGATAAATGTACTTTACAATCAATGACTAAGCACATGCATGTTCATGGGAGTGAGGCTGACATTGACCATAGAGCAGAAGAAACCACTGAGGATGCTTCCATGTCTCAGATTTGTAGTGTGGGGA
ATAGTATGGCGGCTATGGCCCCAAGATTGCAGAAAAAAAAGAAGAGAGCCAGGCTGCGAAGGTTGTCATCTACAGATAAGGATGAAGAACCTCTGAAGAAACTCATTTTGCCTGGAATGGTGGAAGAGATGGGTAGTGATATTATCAAGTATTGGTGTAAGCGATATCAACTTTTTTCAAGGTTTGATGAAGGCATTAAG
CTAGATGAAGAAGGTTGGTTTTCTGTCACTCCTGAGGTTATTGCAAAGCATCATGCAGCACGCTGCGGGATTGGTACTATCATTGAGCGAGAATACTTCTCCTGCAGATTATACGCCCACAGGTGCGATTACAAGTGCCTACGTTGATTCCAGGCAGGGAGAATCCCATCCTCCAATCAATGCCGCTGAATACTTTGAAA
GCGTGATAGAATTGGAACAATCGTCCTGTGATTTTTATTTTTAGACAGTGATTTCAGTACTTTGAAGGCCTTTGTTTCAAGATTCATACATTATTTCCGAAAACAGATGGCTATGTTTCACTTTCAATATCGGAAAATAATGAAATTTGTACATGTTTTAATACAGAAAATGTATGAAATTTGTACATGTTTTAATACAG
AAAATGTATGAAATTTGTACATGTTTTAAT
>TRINITY_DN110132_c0_g1_i7 from sample A3 / Example unspliced isoform:ATTTGTTATTGGATTGGAATATGAAAACTGGTCTGTTTGGAAGATCTTTTTTAACTGATGTGATGTCTCTGTGCAATATGAAAACAGAAGACACTGCTTCTATGGAAGACATGAATTTGATGAAGGAAATGATTGCACTGGGCCTTCCTAGCTCCTTCTCTACAGGCTCTAAGGGAGAACATTTGAGAAGTACAACAAGG
AACAGAAATTCTACAAAACAAAGGGGATCTGAACAAACTCAAATTAGAGATAGGGATTCACTGTACCTGCAGGCAGAGGTTTGTAATGAGGGTGTCATTGATGAAATAGTTACTTATCCAAATTCTGCTTCTATTCTGGCAGAATTATCTACAAAGGATGCAGCCACTCCAGTTGAAATAGTAAGTAATGGAATAATTGC
AAATTGTGCTTTAACTTATCCAACTGACACCTCTTTGTTAACTGAAAGTATTATTTCAAGCAAGGATGAGATGGCATCAATTCAAAACTGCAATTTGGATGATGTCAAAAATAATTTGCTGGTTAGTGACAAAACTGAAATGGAAATTTCAGTGGAGGAGATGCATGAAGTAGAGGTGGGAATAACAGACCGAGCAGAAA
ATCTTGACAACAGACTAAATGAGCAGTATGAATTACAGATGACATATTGCGTACAGAGTAGAGCTGAAGTGTACAACATTGGTGTCAAATCAGAGGTTTGTACTGAGGGTGTTATTGATGAATTAGTTACTTATCCAGATTCTGCTTCTATTCTGGCAGAATTATCTACAAAGGATGAAGACACTCCAAATGAAATAGCA
AGTAATGAAATAAAGCCAAATTGTGCTTTAATTTGTCAAACTGATAGCACTTTGTTAACCGAAAGTATTTTATCAAGCAATGGTGTGATGGCATCAATTCAAACGAGCAATTTGGATGATGTTGAAAATACTCTACTGGTTGGTGACAAAGCTGAAATGGAAGTTTCAGTGGATGAGATGCTTGAAGTAGAGGTGGGAAG
AGCAGACCGAGCAGAAAAGCTTGATAATGGACTGAATGAGCAGCATGAATTACAGATGACATGTTCTGTACAAAGTAGAGCTGAAGTATACAACATTGGTGCCAATTCAGAGATTGATGGCACTGTGGAGAATGATAGATCTAAACTTTCTTGTGCTTCCCATGGGCTAGAAATTTCTCAGCCTGAAAATTCTTGCCTTT
CCAATACTGATCCTGTCGCTGAACTGCACAACATTGGCACGGGTAATTGGAAACCTATTTGGGACACTTATTACCAGAGGTATTATTACTGCAATTATGATACATGGGAAACATCATGGGACCCTCCAGGGGTGGAACTGCAGAAAGATCCTCCTAGAATTGATGGAACTGATAACTGCATTACGGGAGAGCAGGTGATA
TGTAGAACAAGTAGCAAAAGTTATGATGGATGTTCAGGATCAACATTGACAGTTAAAGAAGATGCTACACTGGTGTATGAGAATTGCAGTGAAATGCTTCAAGAAACTGAAGATAATGCATTAAGCAAGCTTGAACTTGAAGCATGTGAGGTGCCAAATATGCTGACTTACAGTATGGAATCTGAACAATTCAGTGGGAA
TGGTGCTTGTAATGGAGAGAACCTTTCAGCAGGCAATATTCTTGAAGACAGAGCTGATAACAAGGAATGGAAGGATTTAACAGAAAACAGCAACCCTCTTAAAGATGTGGAGATCCTTTGCTCAAAGGATATTTCACAAGGTTTAGAACAGTTGGGCAATATGTGCTCATCCAAGGGCTCAGAGTTTGCGGGTCTGTTGG
AGGAATCCCTGGATGCAATAGAGAGgtaatgttgctttgagatgagttcacaacttcacaatgcatgaattgaattagattttctgtcatattttgtcataccttacacaagattttgaaatgcagTTTACAAGTTTATTCACAAGCATGTGGTACTCATACTTGGTTTGATGACGATGGTAATATTAAAGATGAAAAGA
CTGTACTACCAGTAACTATGTATGTGCATGCCCAGGAGAGTGGGGCTTACAATGGACATAGATGTGGTACTCATATTTTGTTTGATGACGATGGTAAAATTAAGAATGAACATACTTCACAACCAATAACTACATGCATGCATTCTCAGGAGAGCAAGACTTACATTGGACATAGTTGTGGTAGTCATATTTTGTTTGAT
GACGATGGTAACATTAAGGATAAATGTACTTTACAATCAATGACTAAGCACATGCATGTTCATGGGAGTGAGGCTGACATTGACCATAGAGCAGAAGAAACCACTGAGGATGCTTCCATGTCTCAGATTTGTAGTGTGGGGAATAGTATGGCGGCTATGGCCCCAAGATTGCAGAAAAAAAAGAAGAGAGCCAGGCTGCG
AAGGTTGTCATCTACAGATAAGGATGAAGAACCTCTGAAGAAACTCATTTTGCCTGGAATGGTGGAAGAGATGGGTAGTGATATTATCAAGTATTGGTGTAAGCGATATCAACTTTTTTCAAGGTTTGATGAAGGCATTAAGCTAGATGAAGAAGGTTGGTTTTCTGTCACTCCTGAGGTTATTGCAAAGCATCATGCAG
CACGCTGCGGGATTGGTACTATCATTGATTGCTTTACTGGAGTTGGTGGCAATGCAATTCAGTTTTCTGAAAAGTGTCATCATGTGATCGCTATAGATATAGATCCAAAAAAGATTGGTTACGCTCAACACAATGCAAGAATATATGGAGTTGCTGATAATATTGATTTCATTGTTGGTGATTTTTTCCAACTTGCTCCT
TCTCTGAAGACCAATTCTCACTGTAACTCCCAAGCAGATGTGGTGTTTCTTTCTCCTCCTTGGGGAGGACCAGATTATGTGAAGGTTGAAAGATTTGATATTCAAGAGATGCTGAGACCCAAGGATGGTTTTTCTCTCTTCAAAGCTGCACAGGTGATTGCACCAAATATTGTCATGTTTTTGCCACGAAATGTGGATCT
GGATCAACTTGCTGAGCTGTCGTGGCTTTCCAATCCCCCTCTTGCACTTGAGATTGAGAAGAATTATGTGAATGGTAGATTGAAGGCAATCACTGCTTACTTCGGGGATATCTCATTACCTACTAGTATTCGACATGCCTGAGCAAACGTTGGATACTAAGAATGGCTCTGCATTTGATTCTAGGTCTGAGTGGGCGAGC
AGATTCGTTGGAGTATACAGCATTAATTTTGCTTTGGGAGTATACAAGTGTGTTCTCTTTCAGGAAAAATAAGTTGAAAAGCTTGCCAATGGATGATAATGAAGTATACTCCATGAATCATTAATGGTTATTATTGGAAACTCTGTTGCTTGCTGGGAGTTATGGTTGTACACCATTTTGCTTGTTGGGGGTTATTAACT
GTGAAACTATGATGAATTATATAAAGCAAAGTTTAGGACATGTTTCAGGTCCGTTCTACAATATTTCTAGTAATTCAACCGGTTGGGGATACGTAGCCGTGAGCATATTCTTCCTTCTCCTTACAAAGTAGGCTTTTTATCAGTGTATCATTAACAGTCTGAACCTCAAGTCTTGGCATCGTTTTTTACGCATTTAAACC
TTTTCGATACCAGAGGTTGTAAAGTTCATTTATTAAATAAGACAGTCCATTCAAGCCTGAATGTGTACAATCCTTGTTAGGATTTCTTTAAAAGAAGATAAACTATAATATGTTTCATGAAGAAACCATTTGTTTCTCTTACATGGCATTTTTCTTTGATCCAATAATGGAGTTGTAAA
Intron 2 ATGTTTTAAT ... AAATTTGTAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 6 | 11 | 9 |
| A2 | 68 | 4 | 10 | 7 |
| A3 | 51.52 | 16 | 23 | 11 |
| A4 | 33.33 | 3 | 3 | 0 |
| A5 | 41.67 | 7 | 7 | 3 |
| A6 | 62.16 | 134 | 249 | 191 |
| A7 | 59.73 | 212 | 368 | 261 |
| A8 | 60.32 | 377 | 666 | 480 |
| A9 | 60.3 | 308 | 551 | 384 |
| A10 | 58.68 | 150 | 251 | 175 |
>TRINITY_DN44389_c0_g1_i2 from sample A7 / Example spliced isoformGCTCCTTCTTTAACGAATTCGTTGGCTGGTTGGCCATGTCACATTGCCTTTTCTTTATAAATAACAACCTCTTCTCCATCTAACCAACCAGTTCAACAATACAGAATCTCATCGTCCATCTCCAGGTCGCGGTGTCGAATCCTGATCATGCTGAAATGCCCACAGGCTCCGCAGGACCGGGCGATGGATGGTATTTCACC
AGATCCCAAGTGGACGAATCCCAGAATTTATGGAATCGAAGCAGCGACGAATCCCGACCATGGAAATATGCCCACTGACTGCGCGGAACTGGGCGGCGGTTGGCATTTCTTCAGATACCAAATTGACGAATCCAGCCCTTCCAGAATCCATGGAGTCGACGCAGCGACTGCAGAAATGCCCGTACCCTCTGCGGGACTGG
GCGAGGGATGGTATTTCACCAAATCCCAAATCGACGAAGCCAGCCCTTCCAGAATCGATGGAATCGATGCAGAGAAAGAGGATGACCTCAGGAAATCATACTGCCATTTTATAAAACATCTAGGCATGGAATTAAGGCTACCCCAGGTGGCCATTGCAACAGCAACCATATACTGCCACAGATTCTTTCTCCGCCAATCT
CACAGCAAAAACGATAGATACACAATCGCAACCGCCTGCCTGCTCCTCGCCAACAAAGTCACGGGGGCGCGACGGAAATTATTGGACGATCTGACTCTTATTTCCTACGAAGTTCTCCATGAAAACGGAGACCCAGCCACTGCGGATCGCATAAGACTCGAACCCCATTTCTTCCAGCAGAGAAAGCAGTTACTCTTGAA
GGCCGAGCATTTTCTTCTCACCACACTCAACTTCGATCTCGATATCGAAACCCCATATACACCTCTCGTCTCCGCCCTCAAAGAGTTCAATGCTGAACGATGGCATTCGAGGTTTGCACAATTTTCTTGGAACTTTGTGAATGATGGATTAACGACAACGGTCTGTCTCCAGTTCAAACCCCACCAAGTTGCTGGTGCGG
CTTTCTATCTTGCATCCAGGGCTCTCCAGGTTCAGTTGCCAGCGGATCCAGAGAACCCATGGCTTCCGACCCCATGGCTTCTGAAGTTCGATATGTCTCTGGAACAGCTGAAAAATGCTTGCAATGAACTTATGAGGTTTTATGAACCGAGAAGGTCGCGCACCCCAACTCCATTACCATTTTCTCCTCAGAGCGAGAAT
ACTTCTCCTGCAGATTATACGCCCACAGGTGCGATTACAAGTGCCTACGTTGATTCCAGGCAGGGAGAATCCCATCCTCCAATCAATGCCGCTGAATACTTTGAAAGCGTGATAGAATTGGAACAATCGTCCTGTGATTTTTATTTTTAGACAGTGATTTCAGTACTTTGAAGGCCTTTGTTTCAAGATTCATACATTAT
TTCCGAAAACAGATGGCTATGTTTCACTTTCAATATCGGAAAATAATGAAACTTGTACATGTTTTAATACAGAAAATGTTTATTATGTTCACA
>TRINITY_DN44389_c0_g1_i1 from sample A7 / Example unspliced isoform:GCTCCTTCTTTAACGAATTCGTTGGCTGGTTGGCCATGTCACATTGCCTTTTCTTTATAAATAACAACCTCTTCTCCATCTAACCAACCAGTTCAACAATACAGAATCTCATCGTCCATCTCCAGGTCGCGGTGTCGAATCCTGATCATGCTGAAATGCCCACAGGCTCCGCAGGACCGGGCGATGGATGGTATTTCACC
AGATCCCAAGTGGACGAATCCCAGAATTTATGGAATCGAAGCAGCGACGAATCCCGACCATGGAAATATGCCCACTGACTGCGCGGAACTGGGCGGCGGTTGGCATTTCTTCAGATACCAAATTGACGAATCCAGCCCTTCCAGAATCCATGGAGTCGACGCAGCGACTGCAGAAATGCCCGTACCCTCTGCGGGACTGG
GCGAGGGATGGTATTTCACCAAATCCCAAATCGACGAAGCCAGCCCTTCCAGAATCGATGGAATCGATGCAGAGAAAGAGGATGACCTCAGGAAATCATACTGCCATTTTATAAAACATCTAGGCATGGAATTAAGGCTACCCCAGGTGGCCATTGCAACAGCAACCATATACTGCCACAGATTCTTTCTCCGCCAATCT
CACAGCAAAAACGATAGATACACAATCGCAACCGCCTGCCTGCTCCTCGCCAACAAAGTCACGGGGGCGCGACGGAAATTATTGGACGATCTGACTCTTATTTCCTACGAAGTTCTCCATGAAAACGGAGACCCAGCCACTGCGGATCGCATAAGACTCGAACCCCATTTCTTCCAGCAGAGAAAGCAGTTACTCTTGAA
GGCCGAGCATTTTCTTCTCACCACACTCAACTTCGATCTCGATATCGAAACCCCATATACACCTCTCGTCTCCGCCCTCAAAGAGTTCAATGCTGAACGATGGCATTCGAGGTTTGCACAATTTTCTTGGAACTTTGTGAATGATGGATTAACGACAACGGTCTGTCTCCAGTTCAAACCCCACCAAGTTGCTGGTGCGG
CTTTCTATCTTGCATCCAGGGCTCTCCAGGTTCAGTTGCCAGCGGATCCAGAGAACCCATGGCTTCCGACCCCATGGCTTCTGAAGTTCGATATGTCTCTGGAACAGCTGAAAAATGCTTGCAATGAACTTATGAGGTTTTATGAACCGAGAAGGTCGCGCACCCCAACTCCATTACCATTTTCTCCTCAGAGCGAGAAT
ACTTCTCCTGCAGATTATACGCCCACAGGTGCGATTACAAGTGCCTACGTTGATTCCAGGCAGGGAGAATCCCATCCTCCAATCAATGCCGCTGAATACTTTGAAAGCGTGATAGAATTGGAACAATCGTCCTGTGATTTTTATTTTTAGACAGTGATTTCAGTACTTTGAAGGCCTTTGTTTCAAGATTCATACATTAT
TTCCGAAAACAGATGGCTATGTTTCACTTTCAATATCGGAAAATAATGAAACTTGTACatgttttaatacagaaaatgtatgaaatttgtacATGTTTTAATACAGAAAATGTTTATTATGTTCACA