sp|Q9LVP1|TOP3A_ARATH ----> DNA topoisomerase 3-alpha
Intron 1 GTAAGATTTA ... TGTTCCCAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 4 | 2 |
| A2 | 100 | 0 | 1 | 0 |
| A3 | 100 | 0 | 4 | 6 |
| A4 | 33.33 | 1 | 0 | 1 |
| A5 | 100 | 0 | 1 | 3 |
| A6 | 50 | 2 | 2 | 2 |
| A7 | 55.56 | 4 | 5 | 5 |
| A8 | 66.67 | 3 | 7 | 5 |
| A9 | 61.9 | 4 | 8 | 5 |
| A10 | 100 | 0 | 0 | 2 |
>TRINITY_DN47255_c0_g1_i5 from sample A7 / Example spliced isoformGCTATCTCATTTCCTGGATATTTAGCTGTTTTCAAGGACAATAAAATTCAATTTGTCGAAGGTGAGGATGAAGGTGAGGATGAGGCAGAAAAGATGGAAGATGGCAAATTTTCAGTTCTGTCACAACTCAAGGCGGGAGAGCCAATAGATATGATTAAAGCAGAAAAGATGGAAGATGGCAAATTTTCAGTTCTGTCACA
ACTCAAGGCGGGAGAGCCAATAGATATGATTAAAGCAGAAGAATTAAAACATCTAACAGAACCATTGCCTCGATATTCAGAGGGAACATTAGTAAAAATGCTGGAGGAACTTGGCATTGGCAGACCTTCTACTTATGCACCTATATTGAAAACATTGGAGGCACGAGAATATGTCACGGTTAGAAGTCGACGGATATATC
CTGAATTCCGTGGCCGAATGTTGTCTTCATTCCTCGCTCACTACTTCCCAGAATACATAAACTATGTTTTCACAGCTAAAATGGAGAGTCAGTTGGATGATATCTCTGCTGGCCGTACTGAATGGAAAAACTTGTTGAACGAGTTTTGGGAAAGGTTTAATCTTGTTTGTGGAAGAGTCAAGGAAATTGATATTTATGAG
GTAGAAAAAATGCTGGAGGAGACTTTTGACAATCTTCTATTTCCTGGACTTCCAGTCGAAAGCAGAGTGTGTCCTGCGTGTCACGATGGGAATCTGAAATTCAAAGTAACCCGTCATGGTGCTGGATATTTTATTGGCTGTGATAAATATCCCAAATGCTCGCACATTACAAGAACAATGTTTACTCAAGAGGACAATGA
AGAACAATCGAACATGATCGACACAAGGACGTTCCCCACACCAAAGCCTCTTGGCAATGATCCCAGTTCCAATCAGCAGGTTTTTCTAAAGCAAGGTCCTTACGGCAGTTACCTCCAGCTGGGGGATAATACAAAAGGTTTCACTCCAAAGCGTGCAAATGTTTCCCAGATCAAAGATATTGATGCTATTACATTGGAGG
ATGCACTTGATATTCTGAGATACCCAATCATTCTGGGTAAGCATCCATCTGATAAGGAACCTGTGGAATTGAGGAGAACAAAGACTGGCTTTTCTATTAGGTATCGACATTTCATAAGTGCGGTACCTAAGAACGTAGATCATCAGACAATCACTCTAGATATGGCTCTTCATTTTCTGGAAAGTGAAGGTACCAAGAGG
ACCGGTCGACCGTCATTTGGAAAGTCAAAACCAAGAGCAATTAAACGCAAAAAATCAAAATCAGCATTGTAATTCATCATCTAGACAAATCTAATTGTAATCTTATCCTGAATTAATCAGGGCAAGGTAACAGGTTTGTATTCATCATTGTATCAAATTCACTTGTATAAAATGATTCTTGGTTTCATTATTCCAATCTA
TTTTTTTATCTTATCTCATGTTTCTATGTGAGCAATACAATAAGATAGTTTTATTAATCTCCAATAAATCTATTAATTAATGCCCAATCAAATCTGTTTCCTCTTTTGGCCATTGATTGGTTGGATGGATGGATATAGAGGGGTCCCTCCCATTGATTCATTTAACACGGGCTAGAAAACACAAAAGCAAACTTCAATTC
ATTAATGAGAAATACATTTCAGTGTTGGTTATTGATCTGGATGCAGGAGACACGAGCACTAGTTATTTTATGACTTATTGCTTCTGCGCAAGTCCTCCAATATTTCACAACAGAAGTAGATGGCTGTTTCAACTCTTGAGATTTAAGGTAGCAGTTATTGAAAGGTTAAAGATAAAGATTTCCAAGTGCAAATATTGATT
AATATCAACATATTGTTCAATTTACAAGACAGGTTTTGCAACTGTGTTAACACTTCAGGTGCAAAGTTTTCACCTTAGTGAAGCTCAAAGTGGAACTTGGAAGAGTTACCACTGTCACTTAAGCATCCTCTTTCCTCACTTCAGGACTATGTATGATAAGTCTAGTGGGGAGCTTCTGTATCTTCATGAAGTTTTCAATG
ATCAGTGAATTTCTGGTTATAGGAGAGTACAAGCTTCTATGAGGGTTTACACTTGCTGGAATTGTTTTTTATTTCTAGGACAGCAGGGGAATTTTTGTAACAGGGTTCTGGAAATTACCATATGTGCATTTGTAACGGCATTTAGATACAAGATAAAACAGAAAATTTTAGGGCACTTTTCTAGAATTTATTGATGAAAT
AAAGTGATTTTAAAACTGCTGGAAATGATTTAACTTTTAGCCAAAACAGAATTGTGTATCACATTATTTGCCTAGCTTAATTAGTGTATAATTTCTGTG
>TRINITY_DN47255_c0_g1_i1 from sample A7 / Example unspliced isoform:GCTATCTCATTTCCTGGATATTTAGCTGTTTTCAAGGACAATAAAATTCAATTTGTCGAAGGTGAGGATGAAGGTGAGGATGAGGCAGAAAAGATGGAAGATGGCAAATTTTCAGTTCTGTCACAACTCAAGGCGGGAGAGCCAATAGATATGATTAAAGCAGAAAAGATGGAAGATGGCAAATTTTCAGTTCTGTCACA
ACTCAAGGCGGGAGAGCCAATAGATATGATTAAAGCAGAAGAATTAAAACATCTAACAGAACCATTGCCTCGATATTCAGAGGGAACATTAGTAAAAATGCTGGAGGAACTTGGCATTGGCAGACCTTCTACTTATGCACCTATATTGAAAACATTGGAGGCACGAGAATATGTCACGGTTAGAAGTCGACGGATATATC
CTGAATTCCGTGGCCGAATGTTGTCTTCATTCCTCGCTCACTACTTCCCAGAATACATAAACTATGTTTTCACAGCTAAAATGGAGAGTCAGTTGGATGATATCTCTGCTGGCCGTACTGAATGGAAAAACTTGTTGAACGAGTTTTGGGAAAGGTTTAATCTTGTTTGTGGAAGAGTCAAGGAAATTGATATTTATGAG
GTGTTTCTGTCTTTCCTATACTCTGTAGAAAAAATGCTGGAGGAGACTTTTGACAATCTTCTATTTCCTGGACTTCCAGTCGAAAGCAGAGTGTGTCCTGCGTGTCACGATGGGAATCTGAAATTCAAAGTAACCCGTCATGGTGCTGGATATTTTATTGGCTGTGATAAATATCCCAAATGCTCGCACATTACAAGAAC
AATGTTTACTCAAGAGGACAATGAAGAACAATCGAACATGATCGACACAAGGACGTTCCCCACACCAAAGCCTCTTGGCAATGATCCCAGTTCCAATCAGCAGGTTTTTCTAAAGCAAGGTCCTTACGGCAGTTACCTCCAGCTGGGGGATAATACAAAAGGTTTCACTCCAAAGCGTGCAAATGTTTCCCAGATCAAAG
ATATTGATGCTATTACATTGGAGGATGCACTTGATATTCTGAGATACCCAATCATTCTGGGTAAGCATCCATCTGATAAGGAACCTGTGGAATTGAGGAGAACAAAGACTGGCTTTTCTATTAGGTATCGACATTTCATAAGTGCGGTACCTAAGAACGTAGATCATCAGACAATCACTCTAGATATGGCTCTTCATTTT
CTGGAAAGTGAAGGTACCAAGAGGACCGGTCGACCGTCATTTGGAAAGTCAAAACCAAGAGCAATTAAACGCAAAAAATCAAAATCAGCATTGTAATTCATCATCTAGACAAATCTAATTGTAATCTTATCCTGAATTAATCAGGGCAAGGTAACAGGTTTGTATTCATCATTGTATCAAATTCACTTGTATAAAATGAT
TCTTGGTTTCATTATTCCAATCTATTTTTTTATCTTATCTCATGTTTCTATGTGAGCAATACAATAAGATAGTTTTATTAATCTCCAATAAATCTATTAATTAATGCCCAATCAAATCTGTTTCCTCTTTTGGCCATTGATTGGTTGGATGGATGGATATAGAGGGGTCCCTCCCATTGATTCATTTAACACGGGCTAGA
AAACACAAAAGCAAACTTCAATTCATTAATGAGAAATACATTTCAGTGTTGGTTATTGACCTGGATGCAGGAAACACGAGCACTAGTTATTTTATGACTTATTGCTTCTGCGCAAGTCCTCCAATgtaagatttatagcctgcatgcaagggtttatttgatggtactaagccttttgagcttaactaatgtagtttgcc
ataagagatttacagcacactgatggattatgttctcttcactgtctgctacttgttcccaagATTTCACAACAGAAGTAGATGGCTGTTTCAACTCTTGAGATTTAAGGTAGCAGTTATTGAAAGGTTAAAGATAAAGATTTCCAAGTGCAAATATTGATTAATATCAACATATTGTTCAATTTACAAGACAGGTTTTG
CAACTGTGTTAACACTTCAGGTGCAAAGTTTTCACCTTAGTGAAGCTCAAAGTGGAACTTGGAAGAGTTACCACTGTCACTTAAGCATCCTCTTTCCTCACTTCAGGACTATGTATGATAAGTCTAGTGGGGAGCTTCTGTATCTTCATGAAGTTTTCAATGATCAGTGAATTTCTGGTTATAGGAGAGTACAAGCTTCT
ATGAGGGTTTACACTTGCTGGAATTGTTTTTTATTTCTAGGACAGCAGGGGAATTTTTGTAACAGGGTTCTGGAAATTACCATATGTGCATTTGTAACGGCATTTAGATACAAGATAAAACAGAAAATTTTAGGGCACTTTTCTAGAATTTATTGATGAAATAAAGTGATTTTAAAACTGCTGGAAATGATTTAACTTTT
AGCCAAAACAGAATTGTGTATCACATTATTTGCCTAGCTTAATTAGTGTATAATTTCTGTG
Intron 2 GCACATTACA ... TGTTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.83 | 6 | 2 | 9 |
| A2 | 40 | 6 | 0 | 8 |
| A3 | 55.56 | 2 | 3 | 2 |
| A4 | 52.94 | 4 | 2 | 7 |
| A5 | 64.71 | 3 | 4 | 7 |
| A6 | 85.71 | 1 | 4 | 8 |
| A7 | 60 | 6 | 4 | 14 |
| A8 | 71.43 | 5 | 12 | 13 |
| A9 | 70.59 | 5 | 16 | 8 |
| A10 | 57.14 | 3 | 3 | 5 |
>TRINITY_DN116727_c0_g6_i8 from sample A2 / Example spliced isoformCGAAAGCAGAGTGTGTCCTGCGTGTCACGATGGGAATCTGAAATTCAAAGTAACCCGTCATGGTGCTGGATATTTTATTGGCTGTGATAAATATCCCAAATGCTCTTGGATGATATCTCTGCTGGCCGTACTGAATGGAAAAACTTGTTGAACGAGTTTTGGGAAAGGTTTAATCTTGTTTGTGGAAGAGTCAAGGAAAT
TGATATTTATGAGGTAGAAAAAATGCTGGAGGAGACTTTTGACAATCTTCTATTTCCTGGACTTCCAGTCGAAAGCAGAGTGTGTCCTGCGTGTCACGATGGGAATCTGAAATTCAAAGTAACCCGTCATGGTGCTGGATATTTTATTGGCTGTGATAAATATCCCAAATGCTCGCACATTACAAGAACAATGTTTACTC
AAGAGGACAATGAAGAACAATCGAACATGATCGACACAAGGACGTTCCCCACACCAAAGCCTCTTGGCAATGATCCCAGTTCCAATCAGCAGGTTTTTCTAAAGCAAGGTCCTTACGGCAGTTACCTCCAGCTGGGGGATAATACAAAAGGTTTCACTCCAAAGCGTGCAAATGTTTCCCAGATCAAAGATATTGATGCT
ATTACATTGGAGGATGCACTTGATATTCTGAGATACCCAATCATTCTGGGTAAGCATCCATCTGATAAGGAACCTGTGGAATTGAGGAGAACAAAGACTGGCTTTTCTATTAGGTATCGACATTTCATAAGTGCGGTACCTAAG
>TRINITY_DN116727_c0_g6_i1 from sample A2 / Example unspliced isoform:TGTGATAAATATCCCAAATGCTCgcacattacaagaacaatgtttactcaagaggacaatgaagaacaatcgaacatgatcgacacaaggacgttccccacaccaaagcctcttggcaatgatcccagttccaatcagcaggtttttctaaagcaaggtccttacggcagttacctccagctgggggataatacaaaagg
tttcactccaaagcgtgcaaatgtttcccagTTGGATGATATCTCTGCTGGCCGTACTGAATGGAAAAACTTGTTGAACGAGTTTTGGGAAAGGTTTAATCTTGTTTGTGGAAGAGTCAAGGAAATTGATATTTATGAGGTAGAAAAAATGCTGGAGGAGACTTTTGACAATCTTCTATTTCCTGGACTTCCAGTCGAAA
GCAGAGTGTGTCCTGCGTGTCACGATGGGAATCTGAAATTCAAAGTAACCCGTCATGGTGCTGGATATTTTATTGGCTGTGATAAATATCCCAAATGCTCgcacattacaagaacaatgtttactcaagaggacaatgaagaacaatcgaacatgatcgacacaaggacgttccccacaccaaagcctcttggcaatgat
cccagttccaatcagcaggtttttctaaagcaaggtccttacggcagttacctccagctgggggataatacaaaaggtttcactccaaagcgtgcaaatgtttcccagATCAAAGATATTGATGCTATTACATTGGAGGATGCACTTGATATTCTGAGATACCCAATCATTCTGGGTAAGCATCCATCTGATAAGGAACC
TGTGGAATTGAGGAGAACAAAGACTGGCTTTTCTATTAGGTATCGACATTTCATAAGTGCGGTACCTAAG