sp|Q9M9L0|APC11_ARATH ----> Anaphase-promoting complex subunit 11

Intron 1 GTGAAAGTAC ... CATGCTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	11	15.5	22
A2	73.08	7	9.5	19
A3	65	14	20	26
A4	61.11	7	6	11
A5	62.5	9	13	15
A6	65.33	69	64	130
A7	63.16	84	59	144
A8	61.44	91	50.5	145
A9	64.1	84	31.5	150
A10	68.31	45	47	97

>TRINITY_DN42349_c3_g1_i6 from sample A6 / Example spliced isoform

TTGGAGGAGGGATCAGGATGAAGCTTCATGGACATGGGATGCAAAAGATGACTTATGTGCGATTTGTAAATTGCCCTTTGATGGTTGCTGTACTGAATGCAAATATCCTGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCAC
ACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACCGAGACTCAGTAAC

>TRINITY_DN42349_c3_g1_i4 from sample A6 / Example unspliced isoform:

TAAAGTTTAAATTTTGTATTTGAAGGGCAAAGAGGGATTCATTTCAGAGCTCGTGGAGAAGCGCAAATTAGAAGGAATCGAGTCTTTCTTCTTCTCAATCAAACAAAAATCTAGCATTTGGAGGAGGGATCAGGATGAAGgtgaaagtactccgtatcctttgaatgaaaatatggatgtgttcttgtttatggccaaat
tctaaaaaatccattatttccatgtactttttcaagtatcagaaaatactttcttaactcgtcaactcctggaaattatggatttgatactgataatcagagtggcatgctgtagCTTCATGGACATGGGATGCAAAAGATGACTTATGTGCGATTTGTAAATTGCCCTTTGATGGTTGCTGTACTGAATGCAAATATCC
TGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCACACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACCGAGACTCAGTAAC

Intron 2 GTGAAAGTAC ... CATGCTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	67.36	11	22	23.5
A2	64.5	7	12	13.5
A3	70.36	14	33.5	33
A4	69.29	7	16	16.5
A5	52.6	9	8.5	12
A6	69.25	69	156	157.5
A7	61.8	84	130.5	150
A8	64.03	91	150	179.5
A9	61.68	84	117.5	153.5
A10	69.28	45	103.5	106.5

>TRINITY_DN42349_c3_g1_i6 from sample A6 / Example spliced isoform

TTGGAGGAGGGATCAGGATGAAGCTTCATGGACATGGGATGCAAAAGATGACTTATGTGCGATTTGTAAATTGCCCTTTGATGGTTGCTGTACTGAATGCAAATATCCTGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCAC
ACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACCGAGACTCAGTAAC

>TRINITY_DN42349_c3_g1_i2 from sample A6 / Example unspliced isoform:

TAAAGTTTAAATTTTGTATTTGAAGGGCAAAGAGGGATTCATTTCAGAGCTCGTGGAGAAGCGCAAATTAGAAGGAATCGAGTCTTTCTTCTTCTCAATCAAACAAAAATCTAGCATTTGGAGGAGGGATCAGGATGAAGgtgaaagtactccagtggcatgctgtagCTTCATGGACATGGGATGCAAAAGATGACTTA
TGTGCGATTTGTAAATTGCCCTTTGATGGTTGCTGTACTGAATGCAAATATCCTGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCACACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACCGAGACTCAGTAAC

Intron 3 GTATCCTTTG ... TGATAATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	44.69	26.1	16.2	21
A2	56.69	15.3	7.6	20
A3	43.32	35.4	19.4	27
A4	45.35	17.1	4.8	14
A5	56.71	11.6	11.2	15
A6	42.88	157.8	53.5	118
A7	46.33	157.1	51.9	133
A8	42.41	173.6	48.2	126
A9	47.77	130.3	29.2	118.9
A10	44.59	105.2	35	83

>TRINITY_DN132868_c7_g1_i13 from sample A1 / Example spliced isoform

GACGGATTCATTTCAGAGCTCGTGGAGAAGCGCAAATTAGAAGGAATCGAGTCTTTCTTCTTCTCAATCAAACAAAAATCTAGCATTTGGAGGAGGGATCAGGATGAAGGTGAAAGTACTCCAGTGGCATGCTGTAGCTTCATGGACATGGGATGCAAAAGATGACTTATGTGCGATTTGTAAATTGCCCTTTGATGGTT
GCTGTACTGAATGCAAATATCCTGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCACACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACCGAGACTCAGTAACGAAATATTTCAAATGTACAACTGTCTGCTTTTAAC
TGGAATTAGACATAATATATTTTCTAGGAAGGTTAATTTACTTTTCAATATTGGACCTTGTCTTGTTAAACAAACATCTGAGTTTTTAATCCAGTCTTTTTTTTCCTCTTTCGAATAGTATGTGAAAAACCATTGCTTGAAATTATTAGTACTAGTTGTGAAAAGCTTTATTCAACAATATCTCTAGTAAGACCTACATT
GCTAAAGGGG

>TRINITY_DN132868_c7_g1_i12 from sample A1 / Example unspliced isoform:

GTATTTTGTTATTATTCATAATTATTGAGATTTGGATTTAAGTGCTCGGTGAGCTTATTGGTGTTGAGGACGGAAACCCTCGACGAGTCTTGGTTTCGATGGTGAAATCTATCCATCCTAGCTAAAGCTGAGAGGTAAATCATTCAGGTTTACCATCGTGTGCTTCATTGTGACGGAGGTAGCAGCTGCGTATTTCCTTG
TGGTTTGTGCTGGGAGGGCGCAATTCCTTGGAAGCCTGATATACAAGGTGTACTTAATAAGGCAGCTTCATTAATGGAAGGAGGGCGCATTGATCAACAAGAGGAACAACCTCTTCACCATTAAATCTCCGTGGAATCTCGAGAAAGGCGTGAACCCCAAAGTCTGTCCATATCTTCACGTGAGAACAGCAGATTGAGGT
TTTCATTAACAGTGGTTTCATACAGTAGCAATCTCAGTTGAAGCTGCCTCAAAACGCGTGGATGTCATGCATGTTCTCTTCATTGTGGTAGCATTATCTCCCTCATAACAGCTGCGCTCTATTTGTCTTTATTCGTGTGCCCTAGTTCCTAGGAGAGGACCACGATCTATTCCATAAACATTCCAGGGCAGCGATCTTCT
TCACAACTGTTGCTAGGTCAGTCATTGAGATCGTGGCTGCTATTCATGAAGGAGAGGCGCCTCCATTAAATATGCATGTGGCATAAAGGGGTGCATTCAATACTGGTTGAGACAGGCATCGTATCTATTAAGGGAGGGCGTGATCTCCACTTGTTGGGGACAGAAGCTATCTTATTTACAGCTGCTATTTATTGTGAACT
CGTGATCATTATAAGACTGTCTAACCACGTGAAGAGGGCTGTGATCTAATCCTTGGGACAGCGTGCTATTACTACTAGCAGATCTTCATCCTTACACAAGTTACGGTGGCTTGTGAAGGCCTCAAACCTTCTCAAGGAAGGCGTGATCAGATCCTATAGTGTACAAGCTATTTGGAGAGCTTACGATTTCTGGCATGGGA
GATCTTTGAGGGCTAAATAACTTGCTTACATACTGGGGCGTTTACAGCAGGCAGTGCACTTACAGTCTACTTCTACACCATTCTGAGCATTGTCTTCAAATACTACAGCCATCTATTATTCATTGTGGGAGCTGATTTAAGATCATGGTAAGGGCGTGTTTGAACAGAGTTTAGGGCAGCAGCCTCCCTTCCATTCCAGC
GTGGGTTCCTCTTGAAGATTGGGTGCTGGAACTCCACCAAGAAGGCGTGTTCCTCATTAAATAAAGAGCAGCATTACATCAGATTCAAGCTAACTGCTACAGCCATCTTTTCCCAAATTCATTATTGGTACAGCATTTGGAGGAGGGATCAGGATGAAGGTGAAAGTACTCCgtatcctttgaatgaaaatatggatgtg
ttcttgtttatggccaaattctaaaaaatccattatttccatgtactttttcaagtatcagaaaatactttcttaactcgtcaactcctggaaattatggatttgatactgataatcagAGTGGCATGCTGTAGCTTCATGGACATGGGATGCAAAAGATGACTTATGTGCGATTTGTAAATTGCCCTTTGATGGTTGCT
GTACTGAATGCAAATATCCTGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCACACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACCGAGACTCAGTAACGAAATATTTCAAATGTACAACTGTCTGCTTTTAACTGG
AATTAGACATAATATATTTTCTAGGAAGGTTAATTTACTTTTCAATATTGGACCTTGTCTTGTTAAACAAACATCTGAGTTTTTAATCCAGTCTTTTTTTTCCTCTTTCGAATAGTATGTGAAAAACCATTGCTTGAAATTATTAGTACTAGTTGTGAAAAGCTTTATTCAACAATATCTCTAGTAAGACCTACATTGCT
AAAGGGG

Intron 4 GTGAAAGTAC ... CATGCTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	62.71	11	15	22
A2	72.55	7	16	21
A3	63.64	14	23	26
A4	72	7	19	17
A5	66.04	9	16	19
A6	67.53	69	146	141
A7	63.24	84	132	157
A8	60.35	91	114	163
A9	61.29	84	107	159
A10	71.88	45	117	113

>TRINITY_DN42349_c3_g1_i6 from sample A6 / Example spliced isoform

TTGGAGGAGGGATCAGGATGAAGCTTCATGGACATGGGATGCAAAAGATGACTTATGTGCGATTTGTAAATTGCCCTTTGATGGTTGCTGTACTGAATGCAAATATCCTGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCAC
ACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACCGAGACTCAGTAAC

>TRINITY_DN42349_c3_g1_i5 from sample A6 / Example unspliced isoform:

TTTGGATTTAAGTGCTCGGTGAGCTTATTGGTGTTGAGGACGGAAACCCTCGACGAGTCTTGGTTTCGATGGTGAAATCTATCCATCCTAGCTAAAGCTGAGAGGTAAATCATTCAGGTTTACCATCGTGTGCTTCATTGTGACGGAGGTAGCAGCTGCGTATTTCCTTGTGGTTTGTGCTGGGAGGGCGCAATTCCTTG
GAAGCCTGATATACAAGGTGTACTTAATAAGGCAGCTTCATTAATGGAAGGAGGGCGCATTGATCAACAAGAGGAACAACCTCTTCACCATTAAATCTCCGTGGAATCTCGAGAAAGGCGTGAACCCCAAAGTCTGTCCATATCTTCACGTGAGAACAGCAGATTGAGGTTTTCATTAACAGTGGTTTCATACAGTAGCA
ATCTCAGTTGAAGCTGCCTCAAAACGCGTGGATGTCATGCATGTTCTCTTCATTGTGGTAGCATTATCTCCCTCATAACAGCTGCGCTCTATTTGTCTTTATTCGTGTGCCCTAGTTCCTAGGAGAGGACCACGATCTATTCCATAAACATTCCAGGGCAGCGATCTTCTTCACAACTGTTGCTAGGTCAGTCATTGAGA
TCGTGGCTGCTATTCATGAAGGAGAGGCGCCTCCATTAAATATGCATGTGGCATAAAGGGGTGCATTCAATACTGGTTGAGACAGGCATCGTATCTATTAAGGGAGGGCGTGATCTCCACTTGTTGGGGACAGAAGCTATCTTATTTACAGCTGCTATTTATTGTGAACTCGTGATCATTATAAGACTGTCTAACCACGT
GAAGAGGGCTGTGATCTAATCCTTGGGACAGCGTGCTATTACTACTAGCAGATCTTCATCCTTACACAAGTTACGGTGGCTTGTGAAGGCCTCAAACCTTCTCAAGGAAGGCGTGATCAGATCCTATAGTGTACAAGCTATTTGGAGAGCTTACGATTTCTGGCATGGGAGATCTTTGAGGGCTAAATAACTTGCTTACA
TACTGGGGCGTTTACAGCAGGCAGTGCACTTACAGTCTACTTCTACACCATTCTGAGCATTGTCTACAAATACTACAGCCATCTATTATTCATTGTGGGAGCTGATTTAAGATCATGGTAAGGGCGTGTTTGAACAGAGTTTAGGGCAGCAGCCTCCCTTCCATTCCAGCGTGGGTTCCTCTTGAAGATTGGGTGCTGGA
ACTCCACCAAGAAGGCGTGTTCCTCATTAAATAAAGAGCAGCATTACATCAGATTCAAGCTAACTGCTACAGCCATCTTTTCCCAAATTCATTATTGGTACAGCATTTGGAGGAGGGATCAGGATGAAGgtgaaagtactccaaattatggatttgatactgataatcagagtggcatgctgtagCTTCATGGACATGGG
ATGCAAAAGATGACTTATGTGCGATTTGTAAATTGCCCTTTGATGGTTGCTGTACTGAATGCAAATATCCTGGTGATGACTGCCCTTTGGTATGGGGTGCATGTTCTCACCCTTTCCACCTTCACTGTATAGTTAAGTGGACTGGCACACAAAATCGGGCACACTGTCCATTGTGTCGCAGAGACTGGCAAATTCAAACC
GAGACTCAGTAAC