sp|Q9LQZ2|DRE2D_ARATH ----> Dehydration-responsive element-binding protein 2D

Intron 1 GTGCTGCTCT ... ACTATTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.23	2	5	4
A2	70	3	6	8
A3	55.56	4	10	0
A4	42.86	4	6	0
A5	100	0	0	5
A6	86.21	2	22	3
A7	77.78	2	11	3
A8	51.35	9	19	0
A9	69.7	5	16	7
A10	58.82	7	12	8

>TRINITY_DN35214_c0_g1_i2 from sample A10 / Example spliced isoform

GATGAACTTTCTGGCAGATTGCGAGACCAAACAGAGAGATATGAGGCATGAGGGGGACGCGTGGGGATGCTCAGTAGAAGCCATTGGTAATTCGAATTCGAATTTGATTACGTGTGTGTGTGTTCTGCATCTGAATATCATATCTGATTGCATGGAGGAAGAATTATTGTAATTCTTTGAGATTACATCTCATAGAGCCA
TAGATTGTTGTACATGTTATGGCGTTAATCGGTGGCCCTGCCAAGCAGATCAGGAAAACCAGAGGCTCCAAGAAAGGCTGCATGAAGGGGAAAGGCGGTCCAGAGAATGCCCTTTGCAACTATAGAGGTGTGAGGCAGAGAACATGGGGAAAATGGGTTGCAGAAATCAGAGAACCCAATAGAGGAGCCCGCCTCTGGCT
TGGGACCTTTGACACTGCCCAAGATCATGAGGACCAAGGTGTAGTATCATCAATTGCCAACAAAGTTAAGGTTCAAGATATTCCTTCCATGATCAATGAGAATTCTGGTACACATCAACCCCAGGAGGAATTGGAATTGCTCTCTGTGGATTCCCATGAAGGCAATTTCATGGAAGGCCTGGAATTGGACAGCATAAGCA
GCATTGACAATAGTTCTATTATCCACGATCAAATTTCAAGCCTGGAGTTCATAGACGATGACGATTCTTGTAAGCTTTTTTATGGCGATGTGGCCTGGCCTCCCCTTGATCTTCCTCCTCTGAATGACGATGCTGCAACGAGCTTTGAGCTGCCAGAATAAGAAAGTGATACAATCAAAGTTACCATGGATGATCATACG
CAACAAATAAAGAGTAAATGGCTGCCATTTTAGAGTGCTTTGATTCTTCTTGAATTGGATATTTTTATGTAATTACATTAGGATGGATTTATTTGTTATGATTTGTAGATTTAGATGATTAATTTCCCAGCTTCCAAGGCAGATCATTTGTCTCTGCTCTTGTAAATAGTTATAATGTTAAGTCACTGTAACTATTTCCG
ATCAGTAGGTTTCGTAAGTTGTATGGTGTAGGCTTGCTTGGTTCATTTCTTGGACATGAATCGTGATTCTTGTCTCCATCAGCATGAGATCATGTTATCTTCC

>TRINITY_DN35214_c0_g1_i1 from sample A10 / Example unspliced isoform:

GATGAACTTTCTGGCAGATTGCGAGACCAAACAGAGAGATATGAGGCATGAGGGGGACGCGTGGGGATGCTCAGTAGAAGCCATTGGTAATTCGAATTCGAATTTGATTACGTGTGTGTGTGTTCTGCATCTGAATATCATATCTGATTGCATGGAGGAAGAATTATTGTAATTCTTTGAGATTACATCTCATAGAGCCA
TAGATTGTTGTACATGTTATGGCGTTAATCGGTGGCCCTGCCAAGCAGATCAGGAAAACCAGAGGCTCCAAGAAAGGCTGCATGAAGGGGAAAGGCGGTCCAGAGAATGCCCTTTGCAACTATAGAGGTGTGAGGCAGAGAACATGGGGAAAATGGGTTGCAGAAATCAGAGAACCCAATAGAGGAGCCCGCCTCTGGCT
TGGGACCTTTGACACTGCCCAAGgtgctgctcttgcttatgatagtgctgccctggctctctatgggccgggtgcctatctcaatcttcctgatccaataaaaaaaacctcgcaattccagactcaatctgcatgcaataataatcttcaatctgatgtttttacagatgatattgatgggtctgttaatactattccag


ATCATGAGGACCAAGGTGTAGTATCATCAATTGCCT

Intron 2 GTGCTGCTCT ... GTTTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.23	2	5	4
A2	70	3	6	8
A3	52.38	5	10	1
A4	42.86	4	6	0
A5	100	0	0	5
A6	77.78	4	22	6
A7	65.22	4	11	4
A8	44.26	17	19	8
A9	58.33	10	16	12
A10	62.5	6	12	8

>TRINITY_DN30068_c0_g1_i1 from sample A8 / Example spliced isoform

CTCGTTCATAAAAAAGCCAAATCCCAAATCGCAAGAACCTCGATGAACTTTCTGGCAGATTGCGAGACCAAACAGAGAGATATGAGGCATGAGGGGGACGCGTGGGGATGCTCAGTAGAAGCCATTGGTAATTCGAATTCGAATTTGATTACGTGTGTGTGTGTTCTGCATCTGAATATCATATCTGATTGCATGGAGGA
AGAATTATTGTAATTCTTTGAGATTACATCTCATAGAGCCATAGATTGTTGTACATGTTATGGCGTTAATCGGTGGCCCTGCCAAGCAGATCAGGAAAACCAGAGGCTCCAAGAAAGGCTGCATGAAGGGGAAAGGCGGTCCAGAGAATGCCCTTTGCAACTATAGAGGTGTGAGGCAGAGAACATGGGGAAAATGGGTT
GCAGAAATCAGAGAACCCAATAGAGGAGCCCGCCTCTGGCTTGGGACCTTTGACACTGCCCAAGATGATATTGATGGGTCTGTTAATACTATTCCAGATCATGAGGACCAAGGTGTAGTATCATCAATTGCCAACAAAGTTAAGGTTCAAGATATTCCTTCCATGATCAATGAGAATTCTGGTACACATCAACCCCAGGA
GGAATTGGAATTGCTCTCTGTGGATTCCCATGAAGGCAATTTCATGGAAGGCCTGGAATTGGACAGCATAAGCAGCATTGACAATAGTTCTATTATCCACGATCAAATTTCAAGCCTGGAGTTCATAGACGATGACGATTCTTGTAAGCTTTTTTATGGCGATGTGGCCTGGCCTCCCCTTGATCTTCCTCCTCTGAATG
ACGATGCTGCAACGAGCTTTGAGCTGCCAGAATAAGAAAGTGATACAATCAAAGTTACCATGGATGATCATACGCAACAAATAAAGAGTAAATGGCTGCCATTTTAGAGTGCTTTGATTCTTCTTGAATTGGATATTTTTATGTAATTACATTAGGATGGATTTATTTGTTATGATTTGTAGATTTAGATGATTAATTTC
CCAGCTTCCAAGGCAGATCATTTGTCTCTGCTCTTGTAAATAGTTATAATGTTAAGTCACTGTAACTATTTCCGATCAGTAGGTTTCGTAAGTTGTATGGTGTAGGCTTGCTTGGTTCATTTCTTGGACATGAATCGTGATTCTTGTCTCCATCAGCATGAGATCATGTTATCTTCTGTATTCAATGTATTATCAATCTC
AAGTGTTGATATTATGAATCTCGAAACGACTAGAGCTCGTTTCCTAATATTTTCAAGTTCCTTTTCTCTGAATTCCAACCTGGTAATGCTAC

>TRINITY_DN30068_c0_g1_i2 from sample A8 / Example unspliced isoform:

CTCGTTCATAAAAAAGCCAAATCCCAAATCGCAAGAACCTCGATGAACTTTCTGGCAGATTGCGAGACCAAACAGAGAGATATGAGGCATGAGGGGGACGCGTGGGGATGCTCAGTAGAAGCCATTGGTAATTCGAATTCGAATTTGATTACGTGTGTGTGTGTTCTGCATCTGAATATCATATCTGATTGCATGGAGGA
AGAATTATTGTAATTCTTTGAGATTACATCTCATAGAGCCATAGATTGTTGTACATGTTATGGCGTTAATCGGTGGCCCTGCCAAGCAGATCAGGAAAACCAGAGGCTCCAAGAAAGGCTGCATGAAGGGGAAAGGCGGTCCAGAGAATGCCCTTTGCAACTATAGAGGTGTGAGGCAGAGAACATGGGGAAAATGGGTT
GCAGAAATCAGAGAACCCAATAGAGGAGCCCGCCTCTGGCTTGGGACCTTTGACACTGCCCAAGgtgctgctcttgcttatgatagtgctgccctggctctctatgggccgggtgcctatctcaatcttcctgatccaataaaaaaaacctcgcaattccagactcaatctgcatgcaataataatcttcaatctgatgt
ttttacagATGATATTGATGGGTCTGTTAATACTATTCCAGATCATGAGGACCAAGGTGTAGTATCATCAATTGCCAACAAAGTTAAGGTTCAAGATATTCCTTCCATGATCAATGAGAATTCTGGTACACATCAACCCCAGGAGGAATTGGAATTGCTCTCTGTGGATTCCCATGAAGGCAATTTCATGGAAGGCCTGG
AATTGGACAGCATAAGCAGCATTGACAATAGTTCTATTATCCACGATCAAATTTCAAGCCTGGAGTTCATAGACGATGACGATTCTTGTAAGCTTTTTTATGGCGATGTGGCCTGGCCTCCCCTTGATCTTCCTCCTCTGAATGACGATGCTGCAACGAGCTTTGAGCTGCCAGAATAAGAAAGTGATACAATCAAAGTT
ACCATGGATGATCATACGCAACAAATAAAGAGTAAATGGCTGCCATTTTAGAGTGCTTTGATTCTTCTTGAATTGGATATTTTTATGTAATTACATTAGGATGGATTTATTTGTTATGATTTGTAGATTTAGATGATTAATTTCCCAGCTTCCAAGGCAGATCATTTGTCTCTGCTCTTGTAAATAGTTATAATGTTAAG
TCACTGTAACTATTTCCGATCAGTAGGTTTCGTAAGTTGTATGGTGTAGGCTTGCTTGGTTCATTTCTTGGACATGAATCGTGATTCTTGTCTCCATCAGCATGAGATCATGTTATCTTCTGTATTCAATGTATTATCAATCTCAAGTGTTGATATTATGAATCTCGAAACGACTAGAGCTCGTTTCCTAATATTTTCAA
GTTCCTTTTCTCTGAATTCCAACCTGGTAATGCTAC