sp|Q9SF16|TCPH_ARATH ----> T-complex protein 1 subunit eta
Intron 1 GTTGGTATCA ... GTTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.94 | 353 | 1 | 62 |
| A2 | 14.53 | 253 | 1 | 43 |
| A3 | 14.63 | 251 | 0 | 43 |
| A4 | 15.89 | 270 | 0 | 51 |
| A5 | 12.93 | 128 | 0 | 19 |
| A6 | 12.97 | 322 | 0 | 48 |
| A7 | 12.1 | 385 | 0 | 53 |
| A8 | 11.41 | 163 | 0 | 21 |
| A9 | 13.49 | 417 | 0 | 65 |
| A10 | 12.44 | 359 | 0 | 51 |
>TRINITY_DN108387_c0_g1_i1 from sample A2 / Example spliced isoformCTCGTCTACACATCTAGGTCGTGACATTCTAGAAGAGTTGCTCTAATTCACTTTACTTTTTGCCTCTCTCCGCCTTCTTCACATTATTCTTTTGTATTCATGTTCTCTTACTCTCTACTGTAACTTCAACCCACAAACAGGGAACGAGAGTTTTAAGGGTTTTAAGCTACCTTCTCTGTTGTATTGGGTCCGGCGAAGCT
TCTGCATTTTCGCCATGTCGACCATGATGCAACCCCAAATAATTTTGCTTAAGGAAGGCACAGACACTACCCAGGGAAAGGCTCAGCTGATCAGTAACATAAATGCCTGCACGGCCATTGTCGATGCTGTGCGTAGCACACTCGGCCCGCGAGGTATGGACAAGCTCATTCATGATGACAAGGGCACCACTACCATTTCT
AACGACGGGGCGACTATTATGAAGCTTCTTGACATTGTTCATCCCGCGGCTAAGATTCTGGTGGACATTGCCAAATCTCAGGATTCAGAGGTTGGTGATGGAACTACGACCGTTGTACTTTTTGCCGGAGAGTTTCTGAAAGAGGCAAAACCTTTTATTGAAGATGGAGTCCATCCTCAGAACCTTATTCGAAGTTTTCG
AACAGCAGCTTATTTGGCAATCAACAAAGTTAAAGAGCTTGCTATTAGTATAGAAGGAAAAAGTCTTGAAGAAAAGAAAGGTCTTCTTGAGAAATGTGCTGCAACTACACTTTCATCAAAACTTATTGGTGGGGAGAAGGATTTCTTTGCTAAGATGGTTGTTGATGCTGTTATTTCAATTGGTCAAGAAGACAGATTGA
ATATGATAGGCATAAAGAAGGTACAAGGAGGAAATATGCGTGATTCGTTTTTAGTGAAGGGTGTTGCTTTTAAAAAGACATTTTCATATGCTGGTTTTGAACAACAACCAAAGAAGTTTCTGAATGCAAAAATTCTTCTTCTAAATGTTGAGCTGGAGCTTAAATCAGAAAAGGAAAATGCAGAAGTTAGGCTGTCAGAT
CCAACAAAATATCAATCAATTGTAGATGCAGAATGGAATATTATATATGATAAACTGGACAAGTGTGTAAAAAGTGGGGCTAAAATTGTGCTATCTCGATTGGCGATTGGTGATCTAGCAACCCAATACTTTGCCGATCGAGATATTTTTTGTGCGGGACGTGTAGCAGAGGAGGATCTACAGCGTGTTGCTGCCGCTAC
TGGTGGATCAGTGCAAACTTCTGTGAACAACGTTGTGCCTGAGGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGTGCAGATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCA
TCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGGTTATTCCACGCCAACTTTGTGAAAATGCTGGGTTTGATGCAACGGAT
GTGCTAAACAAGCTGAGACAGAAGCATGCTCTCCCATCTGGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAGAAGCTGCTTGTCTCATTTTGAGTGTGGATGAAACAGTGAAAAATCC
AAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGACAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTTGGAGAAGTCAGTTTTCTGCTCCCGCTGAAGAGGGGAATGTTCTGCA
TGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATGCATTTTCTCAAGCATTCATTTCTGCTCCGGTTGCTTTCCTTGAACA
TCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAATATTTGACTGGAGGCACTTGGAGGGTCTTAACTTGTTTTCTCTGTGA
ATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATTGCTGACATAACAC
>TRINITY_DN108387_c0_g1_i2 from sample A2 / Example unspliced isoform:TTTTCGAACAGCAGCTTATTTGgttggtatcaatctggagtttcttattttattccattcattttgtacctcaaatcaatatattattcagttttaattatttgaggtgtttatgcagGCAATCAACAAAGTTAAAGAGCTTGCTATTAGTATAGAAGGAAAAAGTCTTGAAGAAAAGAAAGGTCTTCTTGAGAAATGTG
CTGCAACTACACTTTCATCAAAACTTATTGGTGGGGAGAAGGATTTCTTTGCTAAGATGGTTGTTGATGCTGTTATTTCAATTGGTCAAGAAGACAGATTGAATATGATAGGCATAAAGAAGGTACAAGGAGGAAATATGCGTGATTCGTTTTTAGTGAAGGGTGTTGCTTTTAAAAAGACATTTTCATATGCTGGTTTT
GAACAACAACCAAAGAAGTTTCTGAATGCAAAAATTCTTCTTCTAAATGTTGAGCTGGAGCTTAAATCAGAAAAGGAAAATGCAGAAGTTAGGCTGTCAGATCCAACAAAATATCAATCAATTGTAGATGCAGAATGGAATATTATATATGATAAACTGGACAAGTGTGTAAAAAGTGGGGCTAAAATTGTGCTATCTCG
ATTGGCGATTGGTGATCTAGCAACCCAA
Intron 2 GTTTGATACT ... TATTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.73 | 331.8 | 1 | 109 |
| A2 | 23.92 | 264 | 0 | 83 |
| A3 | 20.63 | 350 | 2 | 91 |
| A4 | 17.16 | 309 | 0 | 64 |
| A5 | 20.3 | 161 | 0 | 41 |
| A6 | 21.35 | 840 | 0 | 228 |
| A7 | 19.52 | 1084 | 1 | 263 |
| A8 | 20.43 | 814 | 1 | 209 |
| A9 | 21.87 | 968 | 0 | 271 |
| A10 | 21.3 | 812.8 | 0 | 220 |
>TRINITY_DN110684_c2_g3_i5 from sample A3 / Example spliced isoformATTCAGTTTTAATTATTTGAGGTGTTTATGCAGGCAATCAACAAAGTTAAAGAGCTTGCTATTAGTATAGAAGGAAAAAGTCTTGAAGAAAAGAAAGGTCTTCTTGAGAAATGTGCTGCAACTACACTTTCATCAAAACTTATTGGTGGGGAGAAGGATTTCTTTGCTAAGATGGTTGTTGATGCTGTTATTTCAATTGG
TCAAGAAGACAGATTGAATATGATAGGCATAAAGAAGGTACAAGGAGGAAATATGCGTGATTCGTTTTTAGTGAAGGGTGTTGCTTTTAAAAAGACATTTTCATATGCTGGTTTTGAACAACAACCAAAGAAGTTTCTGAATGCAAAAATTCTTCTTCTAAATGTTGAGCTGGAGCTTAAATCAGAAAAGGAAAATGCAG
AAGTTAGGCTGTCAGATCCAACAAAATATCAATCAATTGTAGATGCAGAATGGAATATTATATATGATAAACTGGACAAGTGTGTAAAAAGTGGGGCTAAAATTGTGCTATCTCGATTGGCGATTGGTGATCTAGCAACCCAATACTTTGCCGATCGAGATATTTTTTGTGCGGGACGTGTAGCAGAGGAGGATCTACAG
CGTGTTGCTGCCGCTACTGGTGGATCAGTGCAAACTTCTGTGAACAACGTTGTGCCTGAGGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGTGCAGATCAGTTCATTGATGAGGCAGAGAG
GAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGGTTATTCCACGCCAACTTTGTGAAAATGCTG
GATTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCACGCTCTCCCATCTGGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAGAAGCTGCTTGTCTCATTTTGAGTGTGGAT
GAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGAGAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTTGGAGAAGTCAGTTTTCTGCTCCCGCTGAA
GAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATGCATTTTCTCAAGCATTCATTTCTGCTCCG
GTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAATATTTGACTGGAGGCACTTGGAGGGTCTTA
ACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATCGCTGACATAACACAGTACCTTTTTCATAAACCTG
>TRINITY_DN110684_c2_g3_i6 from sample A3 / Example unspliced isoform:GTGAACAACGTTGTGCCTGAGgtttgatactactggtaaaacactaacattgtttaagagtggttgaaaggggtctttattagttaatctggtttatttggtagGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATA
GTTTTACGAGGTGGTGCAGATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGC
AAAAGCCCTTGAGGTTATTCCACGCCAACTTTGTGAAAATGCTGGATTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCACGCTCTCCCATCTGGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAA
TCAATGCTGCCACAGAAGCTGCTTGTCTCATTTTGAGTGTGGATGAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGAGAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGT
GGAGTTGGGTTGCTTGGAGAAGTCAGTTTTCTGCTCCCGCTGAAGAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGG
TTGCCTTTTTGGATGCATTTTCTCAAGCATTCATTTCTGCTCCGGTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTT
ACAATCCTTGAGAATATTTGACTGGAGGCACTTGGAGGGTCTTAACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATCGCTGACATAACACAGTACCTTTTTCATAAACCTG
Intron 3 GTTGATTTTT ... TTCTTACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.72 | 191 | 16.7 | 53 |
| A2 | 15.24 | 139 | 9.3 | 25 |
| A3 | 13.98 | 160 | 16.7 | 26 |
| A4 | 17.18 | 135 | 10.3 | 28 |
| A5 | 20.93 | 68 | 7.7 | 18 |
| A6 | 22.07 | 688.3 | 55.3 | 195 |
| A7 | 16.81 | 767 | 76.3 | 155 |
| A8 | 20.2 | 778.3 | 63.3 | 197 |
| A9 | 16.37 | 715 | 62.7 | 140 |
| A10 | 15 | 527 | 51.7 | 93 |
>TRINITY_DN38568_c0_g2_i2 from sample A8 / Example spliced isoformTAATTTTCCATTTGAGTTCTGAAATGATTTTTTGGTTTTCCCTCGCCTCGTCTACACATCTAGGTCGTGACATTCTAGAAGAGTTGCTCTAATTCACTTTACTTTTTGCCTCTCTCCGCCTTCTTCACATTATTCTTTTGTATTCATGTTCTCTTACTCTCTACTGTAACTTCAACCCACAAACAGGGAACGAGAGTTTT
AAGGGTTTTAAGCTACCTTCTCTGTTGTATTGGGTCCGGCGAAGCTTCTGCATTTTCGCCATGTCGACCATGATGCAACCCCAAATAATTTTGCTTAAGGAAGGCACAGACACTACCCAGGGAAAGGCTCAGCTGATCAGTAACATAAATGCCTGCACGGCCATTGTCGATGCTGTGCGTAGCACACTCGGCCCGCGAGG
TATGGACAAGCTCATTCATGATGACAAGGGCACCACTACCATTTCTAACGACGGGGCGACTATTATGAAGCTTCTTGACATTGTTCATCCCGCGGCTAAGATTCTGGTGGACATTGCCAAATCTCAGGATTCAGAGGTTGGTGATGGAACTACGACCGTTGTACTTTTTGCCGGAGAGTTTCTGAAAGAGGCAAAACCTT
TTATTGAAGATGGAGTCCATCCTCAGAACCTTATTCGAAGTTTTCGAACAGCAGCTTATTTGGCAATCAACAAAGTTAAAGAGCTTGCTATTAGTATAGAAGGAAAAAGTCTTGAAGAAAAGAAAGGTCTTCTTGAGAAATGTGCTGCAACTACACTTTCATCAAAACTTATTGGTGGGGAGAAGGATTTCTTTGCTAAG
ATGGTTGTTGATGCTGTTATTTCAATTGGTCAAGAAGACAGATTGAATATGATAGGCATAAAGAAGGTACAAGGAGGAAATATGCGTGATTCGTTTTTAGTGAAGGGTGTTGCTTTTAAAAAGACATTTTCATATGCTGGTTTTGAACAACAACCAAAGAAGTTTCTGAATGCAAAAATTCTTCTTCTAAATGTTGAGCT
GGAGCTTAAATCAGAAAAGGAAAATGCAGAAGTTAGGCTGTCAGATCCAACAAAATATCAATCAATTGTAGATGCAGAATGGAATATTATATATGATAAACTGGACAAGTGTGTAAAAAGTGGGGCTAAAATTGTGCTATCTCGATTGGCGATTGGTGATCTAGCAACCCAATACTTTGCCGATCGAGATATTTTTTGTG
CGGGACGTGTAGCAGAGGAGGATCTACAGCGTGTTGCTGCCGCTACTGGTGGATCAGTGCAAACTTCTGTGAACAACGTTGTGCCTGAGGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGT
GCAGATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGGT
TATTCCACGCCAACTTTGTGAAAATGCTGGGTTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCATGCTCTCCCATCTGGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAG
AAGCTGCTTGTCTCATTTTGAGTGTGGATGAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGACAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTT
GGAGAAGTCAGTTTTCTGCTCCCGCTGAAGAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATG
CATTTTCTCAAGCATTCATTTCTGCTCCGGTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAAT
ATTTGACTGGAGGCACTTGGAGGGTCTTAACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATCGCTGACATAACACAGTACCTTTTTCATAAACCTGGATGTCTATGAAATTGTAGTAGCATTCTAGATTTTTTGGGGTTGCTG
TGGGTGATTATGTGTGAAATTTCCATGTTATATGGATTGAGATCAATGTTATCTAGGCTGTTGGTATTTAAGTAAAAAAAAAAAATAGAAAGTCTGTG
>TRINITY_DN38568_c0_g2_i1 from sample A8 / Example unspliced isoform:CTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGTGCAGATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGA
TATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGGTTATTCCACGCCAACTTTGTGAAAATGCTGGGTTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCATGCTCTCCCATCTGgttgattttttataccttgtt
tcactttcaagcttctctaatatgcttgatgtaatgaagtggtcctgatctttgatttcttactagGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAGAAGCTGCTTGTCTCATTTTG
AGTGTGGATGAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGACAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTTGGAGAAGTCAGTTTTCTGCT
CCCGCTGAAGAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATGCATTTTCTCAAGCATTCATT
TCTGCTCCGGTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAATATTTGACTGGAGGCACTTGG
AGGGTCTTAACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATCGCTGACATAACACAGTACCTTTTTCATAAACCTGGATGTCTATGAAATTGTAGTAGCATTCTAGATTTTTTGGGGTTGCTGTGGGTGATTATGTGTGAAAT
TTCCATGTTATATGGATTGAGATCAATGTTATCTAGGCTGTTGGTATTTAAGTAAAAAAAAAAAATAGAAAGTCTGTG
Intron 4 GTATGGTCTT ... CTATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.15 | 214 | 11.3 | 54 |
| A2 | 13.84 | 193 | 7 | 31 |
| A3 | 14.02 | 227 | 8.8 | 37 |
| A4 | 19.24 | 256 | 8.3 | 61 |
| A5 | 16.1 | 99 | 2.8 | 19 |
| A6 | 15.78 | 427 | 11.3 | 80 |
| A7 | 16.22 | 625 | 17.8 | 121 |
| A8 | 13.52 | 550 | 15.3 | 86 |
| A9 | 13.3 | 606 | 15.5 | 93 |
| A10 | 13.13 | 569 | 17.5 | 86 |
>TRINITY_DN128154_c2_g3_i4 from sample A1 / Example spliced isoformTTTTCCATTTGAGTTCTGAAATGATTTTTTGGTTTTCCCTCGCCTCGTCTACACATCTAGGTCGTGACATTCTAGAAGAGTTGCTCTAATTCACTTTACTTTTTGCCTCTCTCCGCCTTCTTCACATTATTCTTTTGTATTCATGTTCTCTTACTCTCTACTGTAACTTCAACCCACAAACAGGGAACGAGAGTTTTAAG
GGTTTTAAGCTACCTTCTCTGTTGTATTGGGTCCGGCGAAGCTTCTGCATTTTCGCCATGTCGACCATGATGCAACCCCAAATAATTTTGCTTAAGGAAGGCACAGACACTACCCAGGGAAAGGCTCAGCTGATCAGTAACATAAATGCCTGCACGGCCATTGTCGATGCTGTGCGTAGCACACTCGGCCCGCGAGGTAT
GGACAAGCTCATTCATGATGACAAGGGCACCACTACCATTTCTAACGACGGGGCGACTATTATGAAGCTTCTTGACATTGTTCATCCCGCGGCTAAGATTCTGGTGGACATTGCCAAATCTCAGGATTCAGAGGTTGGTGATGGAACTACGACCGTTGTACTTTTTGCCGGAGAGTTTCTGAAAGAGGCAAAACCTTTTA
TTGAAGATGGAGTCCATCCTCAGAACCTTATTCGAAGTTTTCGAACAGCAGCTTATTTGGCAATCAACAAAGTTAAAGAGCTTGCTATTAGTATAGAAGGAAAAAGTCTTGAAGAAAAGAAAGGTCTTCTTGAGAAATGTGCTGCAACTACACTTTCATCAAAACTTATTGGTGGGGAGAAGGATTTCTTTGCTAAGATG
GTTGTTGATGCTGTTATTTCAATTGGTCAAGAAGACAGATTGAATATGATAGGCATAAAGAAGGTACAAGGAGGAAATATGCGTGATTCGTTTTTAGTGAAGGGTGTTGCTTTTAAAAAGACATTTTCATATGCTGGTTTTGAACAACAACCAAAGAAGTTTCTGAATGCAAAAATTCTTCTTCTAAATGTTGAGCTGGA
GCTTAAATCAGAAAAGGAAAATGCAGAAGTTAGGCTGTCAGATCCAACAAAATATCAATCAATTGTAGATGCAGAATGGAATATTATATATGATAAACTGGACAAGTGTGTAAAAAGTGGGGCTAAAATTGTGCTATCTCGATTGGCGATTGGTGATCTAGCAACCCAATACTTTGCCGATCGAGATATTTTTTGTGCGG
GACGTGTAGCAGAGGAGGATCTACAGCGTGTTGCTGCCGCTACTGGTGGATCAGTGCAAACTTCTGTGAACAACGTTGTGCCTGAGGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGTGCA
GATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGGTTAT
TCCACGCCAACTTTGTGAAAATGCTGGGTTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCATGCTCTCCCATCTGGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAGAAG
CTGCTTGTCTCATTTTGAGTGTGGATGAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGAGAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTTGGA
GAAGTCAGTTTTCTGCTCCCGCTGAAGAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATGCAT
TTTCTCAAGCATTCATTTCTGCTCCGGTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAATATT
TGACTGGAGGCACTTGGAGGGTCTTAACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATTGCTGACATAACA
>TRINITY_DN128154_c2_g3_i5 from sample A1 / Example unspliced isoform:TCAATCAATTGTAGATGCAGAATAGAATATTATATAAACTGGACAAGTGTGTAAAAGGTGGGCCTAAAATTGTGCTATCTCGATTGGCGATTGGTGATCTAGCAACCCAAgtatggtcttcttgctggctagagctgttgtttttagaggacacttgttaagagtttaaatattttgattggaatataaacagaagttat
gtctatatgcagTACTTTGCCGATCGAGATATTTTTTGTGCGGGACGTGTAGCAGAGGAGGATCTACAGCGTGTTGCTGCCGCTACTGGTGGATCAGTGCAAACTTCTGTGAACAACGTTGTGCCTGAGGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATG
CCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGTGCAGATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGT
CACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGGTTATTCCACGCCAACTTTGTGAAAATGCTGGGTTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCATGCTCTCCCATCTGGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAG
CCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAGAAGCTGCTTGTCTCATTTTGAGTGTGGATGAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGAGAATTAGAG
CTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTTGGAGAAGTCAGTTTTCTGCTCCCGCTGAAGAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGT
TTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATGCATTTTCTCAAGCATTCATTTCTGCTCCGGTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGT
TAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAATATTTGACTGGAGGCACTTGGAGGGTCTTAACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATTGCTGACATAACA
Intron 5 GTGAGCTTGT ... TATTTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.55 | 245 | 46.2 | 50 |
| A2 | 13.76 | 191 | 33.8 | 33.3 |
| A3 | 17.4 | 193 | 43.2 | 44.6 |
| A4 | 16.01 | 185 | 39.1 | 32.2 |
| A5 | 16.18 | 105 | 22.9 | 21.4 |
| A6 | 12.3 | 745.1 | 113.6 | 144.4 |
| A7 | 10.71 | 910 | 118.1 | 178.9 |
| A8 | 9.46 | 780.3 | 87.2 | 179.3 |
| A9 | 10.86 | 839.7 | 109.9 | 163.2 |
| A10 | 11.62 | 615 | 87.2 | 122.9 |
>TRINITY_DN128154_c2_g3_i4 from sample A1 / Example spliced isoformTTTTCCATTTGAGTTCTGAAATGATTTTTTGGTTTTCCCTCGCCTCGTCTACACATCTAGGTCGTGACATTCTAGAAGAGTTGCTCTAATTCACTTTACTTTTTGCCTCTCTCCGCCTTCTTCACATTATTCTTTTGTATTCATGTTCTCTTACTCTCTACTGTAACTTCAACCCACAAACAGGGAACGAGAGTTTTAAG
GGTTTTAAGCTACCTTCTCTGTTGTATTGGGTCCGGCGAAGCTTCTGCATTTTCGCCATGTCGACCATGATGCAACCCCAAATAATTTTGCTTAAGGAAGGCACAGACACTACCCAGGGAAAGGCTCAGCTGATCAGTAACATAAATGCCTGCACGGCCATTGTCGATGCTGTGCGTAGCACACTCGGCCCGCGAGGTAT
GGACAAGCTCATTCATGATGACAAGGGCACCACTACCATTTCTAACGACGGGGCGACTATTATGAAGCTTCTTGACATTGTTCATCCCGCGGCTAAGATTCTGGTGGACATTGCCAAATCTCAGGATTCAGAGGTTGGTGATGGAACTACGACCGTTGTACTTTTTGCCGGAGAGTTTCTGAAAGAGGCAAAACCTTTTA
TTGAAGATGGAGTCCATCCTCAGAACCTTATTCGAAGTTTTCGAACAGCAGCTTATTTGGCAATCAACAAAGTTAAAGAGCTTGCTATTAGTATAGAAGGAAAAAGTCTTGAAGAAAAGAAAGGTCTTCTTGAGAAATGTGCTGCAACTACACTTTCATCAAAACTTATTGGTGGGGAGAAGGATTTCTTTGCTAAGATG
GTTGTTGATGCTGTTATTTCAATTGGTCAAGAAGACAGATTGAATATGATAGGCATAAAGAAGGTACAAGGAGGAAATATGCGTGATTCGTTTTTAGTGAAGGGTGTTGCTTTTAAAAAGACATTTTCATATGCTGGTTTTGAACAACAACCAAAGAAGTTTCTGAATGCAAAAATTCTTCTTCTAAATGTTGAGCTGGA
GCTTAAATCAGAAAAGGAAAATGCAGAAGTTAGGCTGTCAGATCCAACAAAATATCAATCAATTGTAGATGCAGAATGGAATATTATATATGATAAACTGGACAAGTGTGTAAAAAGTGGGGCTAAAATTGTGCTATCTCGATTGGCGATTGGTGATCTAGCAACCCAATACTTTGCCGATCGAGATATTTTTTGTGCGG
GACGTGTAGCAGAGGAGGATCTACAGCGTGTTGCTGCCGCTACTGGTGGATCAGTGCAAACTTCTGTGAACAACGTTGTGCCTGAGGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGTGCA
GATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGGTTAT
TCCACGCCAACTTTGTGAAAATGCTGGGTTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCATGCTCTCCCATCTGGCGAGGGTGCACCTTATGGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAGAAG
CTGCTTGTCTCATTTTGAGTGTGGATGAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCGTGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGAGAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTTGGA
GAAGTCAGTTTTCTGCTCCCGCTGAAGAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAATTTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATGCAT
TTTCTCAAGCATTCATTTCTGCTCCGGTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAGTATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAATATT
TGACTGGAGGCACTTGGAGGGTCTTAACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAACAGAAAGAATGGACATTGCTGACATAACA
>TRINITY_DN128154_c2_g3_i6 from sample A1 / Example unspliced isoform:TTTTCCATTTGAGTTCTGAAATGATTTTTTGGTTTTCCCTCGCCTCGTCTACACATCTAGGTCGTGACATTCTAGAAGAGTTGCTCTAATTCACTTTACTTTTTGCCTCTCTCCGCCTTCTTCACATTATTCTTTTGTATTCATGTTCTCTTACTCTCTACTGTAACTTCAACCCACAAACAGGGAACGAGAGTTTTAAG
GGTTTTAAGCTACCTTCTCTGTTGTATTGGGTCCGGCGAAGCTTCTGCATTTTCGCCATGTCGACCATGATGCAACCCCAAATAATTTTGCTTAAGGAAGGCACAGACACTACCCAGGGAAAGGCTCAGCTGATCAGTAACATAAATGCCTGCACGGCCATTGTCGATGCTGTGCGTAGCACACTCGGCCCGCGAGGTAT
GGACAAGCTCATTCATGATGACAAGGGCACCACTACCATTTCTAACGACGGGGCGACTATTATGAAGCTTCTTGACATTGTTCATCCCGCGGCTAAGATTCTGGTGGACATTGCCAAATCTCAGGATTCAGAGGTTGGTGATGGAACTACGACCGTTGTACTTTTTGCCGGAGAGTTTCTGAAAGAGGCAAAACCTTTTA
TTGAAGATGGAGTCCATCCTCAGAACCTTATTCGAAGTTTTCGAACAGCAGCTTATTTGGCAATCAACAAAGTTAAAGAGCTTGCTATTAGTATAGAAGGAAAAAGTCTTGAAGAAAAGAAAGGTCTTCTTGAGAAATGTGCTGCAACTACACTTTCATCAAAACTTATTGGTGGGGAGAAGGATTTCTTTGCTAAGATG
GTTGTTGATGCTGTTATTTCAATTGGTCAAGAAGACAGATTGAATATGATAGGCATAAAGAAGGTACAAGGAGGAAATATGCGTGATTCGTTTTTAGTGAAGGGTGTTGCTTTTAAAAAGACATTTTCATATGCTGGTTTTGAACAACAACCAAAGAAGTTTCTGAATGCAAAAATTCTTCTTCTAAATGTTGAGCTGGA
GCTTAAATCAGAAAAGGAAAATGCAGAAGTTAGGCTGTCAGATCCAACAAAATATCAATCAATTGTAGATGCAGAATGGAATATTATATATGATAAACTGGACAAGTGTGTAAAAAGTGGGGCTAAAATTGTGCTATCTCGATTGGCGATTGGTGATCTAGCAACCCAATACTTTGCCGATCGAGATATTTTTTGTGCGG
GACGTGTAGCAGAGGAGGATCTACAGCGTGTTGCTGCCGCTACTGGTGGATCAGTGCAAACTTCTGTGAACAACGTTGTGCCTGAGGTACTTGGAACCTGTGAACTTTTTGAAGAAAAACAAGTTGGCAATGAGCGATTCAATATATTCAGTGGATGCCCATCTGGGCAGACTGCAACAATAGTTTTACGAGGTGGTGCA
GATCAGTTCATTGATGAGGCAGAGAGGAGTTTGCATGATGCCATCATGATAGTTCGAAGAGCAATGAAGAATTCTACCATTGTTGCTGGTGGTGGTGCAATTGATATGGAAATTAGCAGATATTTAAGACAGCACGCTCGAACCATAGCAGGAAAGTCACTATTATTTATCAATTCATATGCAAAAGCCCTTGAGgtgag
cttgttaaatagattgtgagaatacgatacccagaacacaaattgtactgtttaatgaaatttatctgtgatcaatattaattgttatttatcagGTTATTCCACGCCAACTTTGTGAAAATGCTGGGTTTGATGCAACGGATGTGCTAAACAAGCTGAGACAGAAGCATGCTCTCCCATCTGGCGAGGGTGCACCTTAT
GGAGTGGATATAAATACAGGAGGTATTGCTAATACTATTGCAAATTTTGTATGGGAGCCTGCTGTTGTAAAGATAAATGCAATCAATGCTGCCACAGAAGCTGCTTGTCTCATTTTGAGTGTGGATGAAACAGTGAAAAATCCAAAGTCTGAGAGTGCTCAAGGAGAAGGGGCAGCAAATGCAATGGCTGGACGAGGTCG
TGGTGGTGGCTTCCGTGGTCGAGGTCGAGGCATGCGCAGACGATGAGAGAATTAGAGCTTGTTGGTGGGGTGCCATTTTAGTGGAGTTGGGTTGCTTGGAGAAGTCAGTTTTCTGCTCCCGCTGAAGAGGGGAATGTTCTGCATGCATTTCTCTTTACACAAGAATGTCACCATGGAAAACAATTCTACATATTTTCAAT
TTTGTATTGTGGGTGATCTTATTTTTTCCAGGATGACTTCATCACCGTTGAGATTGTTTGCTGGTTACTAGATTTAAATGGGTTGCCTTTTTGGATGCATTTTCTCAAGCATTCATTTCTGCTCCGGTTGCTTTCCTTGAACATCAACAGAATATACTTGAAGACTCATCTAGATTGTATGTTTGACTTCTTAGAAGAAG
TATGAGTTGCATGTAATAACCCAATTAATTGTAAATGATTTTGATGAAACTGAGGGTTAGATAATTTGCTGTTGCACTTTTTACAATCCTTGAGAATATTTGACTGGAGGCACTTGGAGGGTCTTAACTTGTTTTCTCTGTGAATGAAGAAAATATTATTGTCAAGAAAAATAGAAAGTCTGTGGGTTGACCAGAAGAAC
AGAAAGAATGGACATTGCTGACATAACA