sp|Q8LL04|CPL3_ARATH ----> RNA polymerase II C-terminal domain phosphatase-like 3
Intron 1 GTAAGAATTT ... TGACTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.08 | 70 | 1 | 26 |
| A2 | 22.64 | 41 | 0 | 12 |
| A3 | 24.39 | 31 | 0 | 10 |
| A4 | 14.29 | 30 | 1 | 5 |
| A5 | 29.41 | 12 | 0 | 5 |
| A6 | 22.22 | 42 | 0 | 12 |
| A7 | 24.59 | 46 | 0 | 15 |
| A8 | 22.89 | 64 | 0 | 19 |
| A9 | 30 | 70 | 0 | 30 |
| A10 | 18.84 | 56 | 0 | 13 |
>TRINITY_DN41935_c0_g1_i2 from sample A7 / Example spliced isoformCCACCCCCATACCCCGAGATTTGTTATGGAAGAAGGACCGCCCCCTGGTAGCAATCAATGGAGAGGGGAGAGTTTGCGGTATTCTAATGGTAACTATTCTTCTAACCTCTATAATTTGGCATGGGCTAAAGCAGTAGTGCAGAGTAAGCCTACATTTTCATTAGAAACGAACAATAACGACAAAGGGAAGGGAGAAATTT
TGAAAAATGGCGGTGGTGGAACTGGAGGGTTATCGAGATCAAGGAGGGATTTGGGATCTGAGAAATCTAATGATTCCAGAAATGGGAGGAATCCGAAAGCAAAAACCGATGATTATAACGAATTTGTTTCGGCTTCTGGATCTAGTTCGAGTGAAGGGAATGACAGGGTTGTTACTTCTAAGAAGGGAATTGCAGAGAAT
GGACAAAAAAAGATTTCCGATAAGGTGGCAGTGATTAATATCAGTGATGATGATGATGATGCTGATGATGACGACAATGATGAAAAAATTGTGAACAGGACTGGTGACGATGATCGCGAAGAGGGAGAGCTGGAAGAAGGTGAGATTGATGCAGGATTGGCGTCTGCAGTGGGATCTCAGGCATCGAGTTCGGAGGAGCG
GTTTGAGAATTCAGGAGATTTTCTTCATGGCGGAGGAAGAATAGATAGCAGCAGGGCATTATCTGATAGACATACTAGGTATAGAGATAAGTCGCCTGCAAAAAGTTCTGACAGATCATGGCCAAAAGATCTGGTGAGACAAAGCAGCTATCATCAAGATGATGGAAAGCAGAGATTGAAAGATCAAGAAAGGGAAAGAA
AATTAGATGTAATTGCTGAAATGGTCAAGAATGTGACAGTCAAGGATGCGCAGAAGTCATTTGTTGGCGTTTGCCATCAACTTCATAAAGCTTTGGAATGTCTCAACGAAACTAATCCCCAGATTCCAGTTAACAATGTAGCTAGCCTTATCAAACAGATCTTTGCTGGTATTCGGGCTGTATATGCTGTTCGAAATACA
TGGAGCGGTATTCAGCAGAATCAGGACCGGAGTAGTGCATTTCCAAGGTTGTTGCAATATGTGAACAGGGAAGCTCGTAATCTTTTTACATCTAAACAAATCAAAGAGTTGGAGATCATGTTGCTGTCCGTCCCAACTACCGTCCGTATTTCAAAAGCTGATAGCGCCGAGGAAGAGAAGGAAGAACGACCTTTGTATGC
AATGCATTCCAGTCAGGAAAATGCCATCAAACCAGAAGGAAGGGAAATAACCTCACTTAATATTGAAACAACAACAGAGAATATCTTAACTAAATCAATTGTTACACTTAATAATGCTAATGAAATAACAAGAGACTCCAGAACTCTCAAACCTAATGAATATACCGCAGCACCAACATCAACAGAAACTGATAGTCGGT
CCTCCAGCAGCAACAGTTTATCTGCCTGTGGACCAGAATCATCCAACAACTCTTGTTACAAGCCCTTGGAAGGCTTCGAAGAACCAGATGATTCAAACCTTCCCAACCATTTGTATGAAGGTTCAGTGGCAGATTTGAATCGACGAGATTCAAAATGTAATTCTTTGGGAGTTCAACCCAGTCCTAAACTCTCTGATCCA
TTGGATAGAAGCATTCAAGATGAAAATGCATACTGGCAATCAGATACTGTGAATGCTTTTACATACTATCAAGAAAAGTTTGGAGGAGGACAACTTTCTAACAGTACCAGGCTCCCTAGCCCAACTCCATCAGAGGATGGTGAGGAGGGAGAAGCAAGCAATCAAGGTGTGGAGGTATCAATGTTCAGTGACGATAAAGA
GCCACAGCAGAGTGTAGAGGAGAGAGAAGTGAGGGACATGGATATCAGTGAAAATGTTTCTGTTCCATCTACTTACGGTAGCATTCCACAATTGAACTCAGACATGGAATCCCAAGTTGTGGGGCCAAGGATTCAAACTGATTTTTCAGAGGAGCTGGAAGTACCGGCTTTCCAGTCTAAAGATAGTAAAGGTGCAGTTG
AGACAGGAAAGTCAATAAATAAAATGACTGGGTCTTCCCGAAAACTCCAACCAAAGAGCAGAGATCCTAGGCGCAGGGTTGCTGAATCTGAGTTCTATACTATGGACCTGAATAGGCGTCCTTGCCATCCTGATTCTAATGTTATCACAAGGGAACATGTTGTAGGAAGATTTCTTGATAGGAAGCACAAGTCAGATGAT
GATCTTCCACAGGATCCTCATAATTCTAAACGACTAAGGAATCATTCTGATCACCATCTTTTTTCTAGTGGTTTTCCAGTAGTGACATCTGGATGTGGTGGCTGGCTTGAAGAGAATACCGTTATTCCAGCATCTACTGACTGGGATCAAACATCTGAAATGGAAATAGATAGCACAGGAGCGCTGTCAAGGTCCAGTGA
TTTGAGAAGTGATAGTAATAGTATCTTTACTACAGATACACAAAATGCCACTATAGAAAACAGAAACAAAAGACAGAAAACTGAATCATTCTATCAGGCTGGTATTTCAATGGACCCTGTTTCTGAAGCCAACAAAATTCAACCAAATAGTACTGATATTAATTTAAATCCGAGGATGCCATCTGTAGGGGAGGAAGAGA
GAGGAGAAAGAAAAGAGACAGAGATAACTGAGATTGGTCAGCAGACAAATAGCTCAGTCGCTTTGAACTCAAATATAATACCTTCTGTATTGAAAGATATAGCGGTCAACCCAACTATGCTTATGCACTTGATTAAGCAAGAACAACAACGGTTGTCAGCACAGGCTGCACAAAAGCCTGAGCAATCCCAGCAGACAAAT
CCTCCCTCGGGTCCTACTATAGCTTCCGTTATCACATCTGGGAAAGTAATAGCAGCTGACCCAAGCATGCTAAAGGATTCTAATCTACAGCAGAAAACAGCACAGCAAGCACCGGCAACTGCAACCAAACCTGCAACTCAAGTAACTTCCACGGCTGGAGACCCTGGAAAGCCTCGGATGAAGCCTCGTGATCCCCGTCG
TATTCTTCACATGAATTCAGGTAATGATATTGTGAACTTGAATGGGACAGATAAACAGTTTGCCCCAGTGAGCAAGCAGATACGTATGGCTTCAGGACCAGCAACTACAGAGTCAGCTCCAAAGTTGCAACAGGCTCCTAGTTTGCCTAACATTGAACAGAATTTCAAAGAAAAGCTTGCAAGGATTGCTGAAATGCTAA
AAAATTCTGAGATGAGAACGTTACGAGTTATATCATCACAGATGTCTGTTGGTCAATCAGTTAGAGAAACTGACCCCATTGACTTGGAGCAGGGTTCCATCGAATCTTCTAAATTTCTAGAAGTAGATATTCAACAAGCCATAGAAGTTCCAAAGGATTCTAGCATGGTTATACCCCCCTTGCAGAGTTTGTCAAATGAA
AATACCATAATCACACAAAATCATTTGAATCCTTGGGGTGATGTGGATCACCTCTTGGAAGGGCTAAGCGAAGAACAACGAATTGCTATCCAACAGGAACGAGCACGGAGAATTGGTGAACAAAATAAAATGTTCAGCGCCAAGAAACTTTGCCTTGTTTTGGACCTTGATCACACACTTCTAAATTCAGCTAAGTTTAC
TGAAATCGATCCTGTGCACGAGGAAATGCTAAGGAAGAAGGAGGAGCAAGACCGAGAGAAACCTCAGCGTCAGCTCTTTCGCTTTCCTCATATGGGAATGTGGACTAAATTGCGGCCTGGCATCTGGAATTTTCTGGACAGGGCAAGCAAATTGTACGAACTACATGTTTATACAATGGGCAACAAAGTTTATGCCACAG
AGATGGCAAAAGTACTTGATCCCACAGGAACTTTATTTGCAGGACGTGTTATTTCGAAGGGTGATGAGGCTGATCTAGATGGAGATGATAGGCTACCTAAAAGTAAAGATTTAGATGGTGTGTTGGGAATGGAATCTGCAGTGGTAATCATTGATGATTCTGCAAGGGTTTGGCCTCATCATAGGCATAATCTAATTGTG
GTTGAAAGATACATGTATTTTCCCTGTAGTAGGCGACAATTTGGACTGCCAGGACTGTCTCTATTAGAAGCAGATGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCCCTAGCGGTGATTGAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGA
ACAGCAAAAGATTTTAAAGGATTGTAAAGTGGTTTTTAGTAGAGTTTTTCCAGTTGGAGAAGCACAACCACATCTACACCCTCTGTGGCAGATGGCCGAACAATTTGGTGCACTATGCACAACACAAATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAG
GTCGATATGTTGTTCACCCAGGGTGGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAACTATGAATCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTA
GAATCGACAATCAAACGGGTTAGTACCTACTACCAAGACATAAGATGTGCTTGAAAAGGTTGGGAGATAATACAGAAGTCACATCTTTGTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTTTTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAAT
GTCTGAATTCCGCAGATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATTTTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAA
TACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCATGCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTG
ATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACTGTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCCTTTCAAAAGAGGTGGCAAACTTATCAATTGAC
>TRINITY_DN41935_c0_g1_i1 from sample A7 / Example unspliced isoform:GATATGTTGTTCACCCAGGGTGgtaagaatttgtcatagttttcatgaatgctgttattccagtaatgttcttttgacaagttcctgaacttttacattaaatagctgctattgttttacccttgtgaatggcatatgtttaatattatttcatttgactaacagGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAA
ATGAGAGGGATTTTTCTATAACTATGAATCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGGTTAGTACCTACTACCAAGACATAAGATGTGCTTGAAAAGGT
TGGGAGATAATACAGAAGTCACATCTTTGTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTTTTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAATGTCTGAATTCCGCAGATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTG
ATTGAAAGAATTTCGGCGGTTAAGAATTTTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTA
CTTGCTTAAAGGGTTTAAGTTTTGTCATGCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTG
ATTGAGTCTCCCCAAAAGCCTAGCAACTGTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCCTTTCAAAAGAGGTGGCAAACTTATCAATTGAC
Intron 2 GTATAGTTTA ... CCATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18 | 41 | 0 | 9 |
| A2 | 12.7 | 55 | 0 | 8 |
| A3 | 12.31 | 57 | 0 | 8 |
| A4 | 11.32 | 47 | 0 | 6 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 15.63 | 27 | 0 | 5 |
| A7 | 14.06 | 55 | 0 | 9 |
| A8 | 13.56 | 51 | 0 | 8 |
| A9 | 24.53 | 40 | 0 | 13 |
| A10 | 11.76 | 45 | 6 | 6 |
>TRINITY_DN114039_c3_g3_i4 from sample A2 / Example spliced isoformTGCAACTAATAATCTCATGGATATGGTTCATAGATTAATGACTTACTCTATGCAGATAATCCTTGATGTTTCTTCTATTGTTTTTTAATATTTCCTTTGATGAATTATTCATCCTATGCTATTGTTTGGCAGGCTGGAGACCCTGGAAAGCCTCGGATGAAGCCTCGTGATCCCCGTCGTATTCTTCACATGAATTCAGG
TAATGATATTGTGAACTTGAATGGGACAGATAAACAGTTTGCCCCAGTGAGCAAGCAGATACGTATGGCTTCAGGACCAGCAACTACAGAGTCAGCTCCAAAGTTGCAACAGGCTCCTAGTTTGCCTAACATTGAACAGAATTTCAAAGAAAAGCTTGCAAGGATTGCTGAAATGCTAAAAAATTCTGAGATGAGAACGT
TACGAGTTATATCATCACAGATGTCTGTTGGTCAATCAGTTAGAGAAACTGACCCCATTGACTTGGAGCAGGGTTCCATCGAATCTTCTAAATTTCTAGAAGTAGATATTCAACAAGCCATAGAAGTTCCAAAGGATTCTAGCATGGTTATACCCCCCTTGCAGAGTTTGTCAAATGAAAATACCATAATCACACAAAAT
CATTTGAATCCTTGGGGTGATGTGGATCACCTCTTGGAAGGGCTAAGCGAAGAACAACGAATTGCTATCCAACAGGAACGAGCACGGAGAATTGGTGAACAAAATAAAATGTTCAGCGCCAAGAAACTTTGCCTTGTTTTGGACCTTGATCACACACTTCTAAATTCAGCTAAGTTTACTGAAATCGATCCTGTGCACGA
GGAAATGCTAAGGAAGAAGGAGGAGCAAGACCGAGAGAAACCTCAGCGTCAGCTCTTTCGCTTTCCTCATATGGGAATGTGGACTAAATTGCGGCCTGGCATCTGGAATTTTCTGGACAGGGCAAGCAAATTGTACGAACTACATGTTTATACAATGGGCAACAAAGTTTATGCCACAGAGATGGCAAAAGTACTTGATC
CCACAGGAACTTTATTTGCAGGACGTGTTATTTCGAAGGGTGATGAGGCTGATCTAGATGGAGATGATAGGCTACCTAAAAGTAAAGATTTAGATGGTGTGTTGGGAATGGAATCTGCAGTGGTAATCATTGATGATTCTGCAAGGGTTTGGCCTCATCATAGGCATAATCTAATTGTGGTTGAAAGATACATGTATTTT
CCCTGTAGTAGGCGACAATTTGGACTGCCAGGACTGTCTCTATTAGAAGCAGATGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCCCTAGCGGTGATTGAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAGCAAAAGATTTTAAAGGA
TTGTAAAGTGGTTTTTAGTAGAGTTTTTCCAGTTGGAGAAGCACAACCACATCTACACCCTCTGTGGCAGATGGCCGAACAATTTGGTGCACTATGCACAACACAAATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAGGTCGATATGTTGTTCACCCAG
GGTGGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAACTATGAATCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGGTT
AGTACCTACTACCAAGACATAAGATGTGCTTGAAAAGGTTGGGAGATAATACAGAAGTCACATCTTTGTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTTTTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAATGTCTGAATTCCGCAGATGTGA
AGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATTTTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGA
GTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCATGCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGAT
GACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACTGTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCCTTTCAAAAGAGGTGGCAAACTTATCAAT
>TRINITY_DN114039_c3_g3_i1 from sample A2 / Example unspliced isoform:CATAATCTAATTGTGGTTGAAAGgtatagtttatttcaattattttccaatgtccagtcaaaagcttacaacagttacttgcctttgaaaagtggtggttaaaggtatatgttattgttcctaagtactgacagactaccatgtacagATACATGTATTTTCCCTGTAGTAGGCGACAATTTGGACTGCCAGGACTGTCT
CTATTAGAAGCAGATGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCCCTAGCGGTGATTGAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAGCAAAAGATTTTAAAGGATTGTAAAGTGGTTTTTAGTAGAGTTTTTCCAGTTGGAGA
AGCACAACCACATCTACACCCTCTGTGGCAGATGGCCGAACAATTTGGTGCACTATGCACAACACAAATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAGGTCGATATGTTGTTCACCCAGGGTGGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAA
ATGAGAGGGATTTTTCTATAACTATGAATCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGGTTAGTACCTACTACCAAGACATAAGATGTGCTTGAAAAGGT
TGGGAGATAATACAGAAGTCACATCTTTGTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTTTTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAATGTCTGAATTCCGCAGATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTG
ATTGAAAGAATTTCGGCGGTTAAGAATTTTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTA
CTTGCTTAAAGGGTTTAAGTTTTGTCATGCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTG
ATTGAGTCTCCCCAAAAGCCTAGCAACTGTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCCTTTCAAAAGAGGTGGCAAACTTATCAAT
Intron 3 GTTAGTACCT ... AATTCCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 92.31 | 6 | 87 | 57 |
| A2 | 92.98 | 4 | 58 | 48 |
| A3 | 87.5 | 9 | 84 | 42 |
| A4 | 86.09 | 8 | 46 | 53 |
| A5 | 91.11 | 2 | 22 | 19 |
| A6 | 81.82 | 19 | 81 | 90 |
| A7 | 82.96 | 19 | 109 | 76 |
| A8 | 88.24 | 18 | 152 | 118 |
| A9 | 92.49 | 8 | 128 | 69 |
| A10 | 78.95 | 12 | 49 | 41 |
>TRINITY_DN37237_c0_g1_i2 from sample A9 / Example spliced isoformATGTAGAATCGACAATCAAACGGATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATTTTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGG
GTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCATGCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACT
GGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACTGTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCCTTTCAAAAGAGGTGGCAAACTTATCAATTG
>TRINITY_DN37237_c0_g1_i1 from sample A9 / Example unspliced isoform:GCTCTGTGTTGCCGCATCGAGTAAGTGTTTCTACGCGTTTGCAAGGAACCGCTCGGCCGTTCAAAAAACTTCTTGCATGGGTTTCCTTTCGTTTCTTCGATCACAAACTCTTCCCCCGAAAACCCCATTAAATTTGGTGCTTTTTTGGCCCTAAACGGAGGAATTTAGATCAGGGGTTCGAATCCTGAATAGAAACCCTC
CTTCTGCATTTGTTTGATGATACCCAGGTCCTAAAACGCTGGTTTTTCCTCGTTTTCTGAAGCATTTGGCCCCTCGAAACCGCGACACCGAAAAAAACTGAAACCTAAAATGACCCCCCCGGTGGAAAATGAAACCCCAATGGAAGACATCGAAGAAGGGGAAATAGCAGATGACGTAGAGACCTCCGGCGAGGTTGTAA
GCGTTCATGATAATTTGCCGATTTCACAGACGAAAGCAGCGAGCTTGAACGATTCGGCCGCTTCTAGGTTTCGCAAAGATGGTGGCAGAAGGGAGGAGAACCCCCCGTCCCACCCCCATACCCCGAGATTTGTTATGGAAGAAGGACCGCCCCCTGGTAGCAATCAATGGAGAGGGGAGAGTTTGCGGTATTCTAATGGT
AACTATTCTTCTAACCTCTATAATTTGGCATGGGCTAAAGCAGTAGTGCAGAGTAAGCCTACATTTTCATTAGAAACGAACAATAACGACAAAGGGAAGGGAGAAATTTTGAAAAATGGCGGTGGTGGAACTGGAGGGTTATCGAGATCAAGGAGGGATTTGGGATCTGAGAAATCTAATGATTCCAGAAATGGGAGGAA
TCCGAAAGCAAAAACCGATGATTATAACGAATTTGTTTCGGCTTCTGGATCTAGTTCGAGTGAAGGGAATGACAGGGTTGTTACTTCTAAGAAGGGAATTGCAGAGAATGGACAAAAAAAGATTTCCGATAAGGTGGCAGTGATTAATATCAGTGATGATGATGATGATGCTGATGATGACGACAATGATGAAAAAATTG
TGAACAGGACTGGTGACGATGATCGCGAAGAGGGAGAGCTGGAAGAAGGTGAGATTGATGCAGGATTGGCGTCTGCAGTGGGATCTCAGGCATCGAGTTCGGAGGAGCGGTTTGAGAATTCAGGAGATTTTCTTCATGGCGGAGGAAGAATAGATAGCAGCAGGGCATTATCTGATAGACATACTAGGTATAGAGATAAG
TCGCCTGCAAAAAGTTCTGACAGATCATGGCCAAAAGATCTGGTGAGACAAAGCAGCTATCATCAAGATGATGGAAAGCAGAGATTGAAAGATCAAGAAAGGGAAAGAAAATTAGATGTAATTGCTGAAATGGTCAAGAATGTGACAGTCAAGGATGCGCAGAAGTCATTTGTTGGCGTTTGCCATCAACTTCATAAAGC
TTTGGAATGTCTCAACGAAACTAATCCCCAGATTCCAGTTAACAATGTAGCTAGCCTTATCAAACAGATCTTTGCTGGTATTCGGGCTGTATATGCTGTTCGAAATACATGGAGCGGTATTCAGCAGAATCAGGACCGGAGTAGTGCATTTCCAAGGTTGTTGCAATATGTGAACAGGGAAGCTCGTAATCTTTTTACAT
CTAAACAAATCAAAGAGTTGGAGATCATGTTGCTGTCCGTCCCAACTACCGTCCGTATTTCAAAAGCTGATAGCGCCGAGGAAGAGAAGGAAGAACGACCTTTGTATGCAATGCATTCCAGTCAGGAAAATGCCATCAAACCAGAAGGAAGGGAAATAACCTCACTTAATATTGAAACAACAACAGAGAATATCTTAACT
AAATCAATTGTTACACTTAATAATGCTAATGAAATAACAAGAGACTCCAGAACTCTCAAACCTAATGAATATACCGCAGCACCAACATCAACAGAAACTGATAGTCGGTCCTCCAGCAGCAACAGTTTATCTGCCTGTGGACCAGAATCATCCAACAACTCTTGTTACAAGCCCTTGGAAGGCTTCGAAGAACCAGATGA
TTCAAACCTTCCCAACCATTTGTATGAAGGTTCAGTGGCAGATTTGAATCGACGAGATTCAAAATGTAATTCTTTGGGAGTTCAACCCAGTCCTAAACTCTCTGATCCATTGGATAGAAGCATTCAAGATGAAAATGCATACTGGCAATCAGATACTGTGAATGCTTTTACATACTATCAAGAAAAGTTTGGAGGAGGAC
AACTTTCTAACAGTACCAGGCTCCCTAGCCCAACTCCATCAGAGGATGGTGAGGAGGGAGAAGCAAGCAATCAAGGTGTGGAGGTATCAATGTTCAGTGACGATAAAGAGCCACAGCAGAGTGTAGAGGAGAGAGAAGTGAGGGACATGGATATCAGTGAAAATGTTTCTGTTCCATCTACTTACGGTAGCATTCCACAA
TTGAACTCAGACATGGAATCCCAAGTTGTGGGGCCAAGGATTCAAACTGATTTTTCAGAGGAGCTGGAAGTACCGGCTTTCCAGTCTAAAGATAGTAAAGGTGCAGTTGAGACAGGAAAGTCAATAAATAAAATGACTGGGTCTTCCCGAAAACTCCAACCAAAGAGCAGAGATCCTAGGCGCAGGGTTGCTGAATCTGA
GTTCTATACTATGGACCTGAATAGGCGTCCTTGCCATCCTGATTCTAATGTTATCACAAGGGAACATGTTGTAGGAAGATTTCTTGATAGGAAGCACAAGTCAGATGATGATCTTCCACAGGATCCTCATAATTCTAAACGACTAAGGAATCATTCTGATCACCATCTTTTTTCTAGTGGTTTTCCAGTAGTGACATCTG
GATGTGGTGGCTGGCTTGAAGAGAATACCGTTATTCCAGCATCTACTGACTGGGATCAAACATCTGAAATGGAAATAGATAGCACAGGAGCGCTGTCAAGGTCCAGTGATTTGAGAAGTGATAGTAATAGTATCTTTACTACAGATACACAAAATGCCACTATAGAAAACAGAAACAAAAGACAGAAAACTGAATCATTC
TATCAGGCTGGTATTTCAATGGACCCTGTTTCTGAAGCCAACAAAATTCAACCAAATAGTACTGATATTAATTTAAATCCGAGGATGCCATCTGTAGGGGAGGAAGAGAGAGGAGAAAGAAAAGAGACAGAGATAACTGAGATTGGTCAGCAGACAAATAGCTCAGTCGCTTTGAACTCAAATATAATACCTTCTGTATT
GAAAGATATAGCGGTCAACCCAACTATGCTTATGCACTTGATTAAGCAAGAACAACAACGGTTGTCAGCACAGGCTGCACAAAAGCCTGAGCAATCCCAGCAGACAAATCCTCCCTCGGGTCCTACTATAGCTTCCGTTATCACATCTGGGAAAGTAATAGCAGCTGACCCAAGCATGCTAAAGGATTCTAATCTACAGC
AGAAAACAGCACAGCAAGCACCGGCAACTGCAACCAAACCTGCAACTCAAGTAACTTCCACGGCTGGAGACCCTGGAAAGCCTCGGATGAAGCCTCGTGATCCCCGTCGTATTCTTCACATGAATTCAGGTAATGATATTGTGAACTTGAATGGGACAGATAAACAGTTTGCCCCAGTGAGCAAGCAGATACGTATGGCT
TCAGGACCAGCAACTACAGAGTCAGCTCCAAAGTTGCAACAGGCTCCTAGTTTGCCTAACATTGAACAGAATTTCAAAGAAAAGCTTGCAAGGATTGCTGAAATGCTAAAAAATTCTGAGATGAGAACGTTACGAGTTATATCATCACAGATGTCTGTTGGTCAATCAGTTAGAGAAACTGACCCCATTGACTTGGAGCA
GGGTTCCATCGAATCTTCTAAATTTCTAGAAGTAGATATTCAACAAGCCATAGAAGTTCCAAAGGATTCTAGCATGGTTATACCCCCCTTGCAGAGTTTGTCAAATGAAAATACCATAATCACACAAAATCATTTGAATCCTTGGGGTGATGTGGATCACCTCTTGGAAGGGCTAAGCGAAGAACAACGAATTGCTATCC
AACAGGAACGAGCACGGAGAATTGGTGAACAAAATAAAATGTTCAGCGCCAAGAAACTTTGCCTTGTTTTGGACCTTGATCACACACTTCTAAATTCAGCTAAGTTTACTGAAATCGATCCTGTGCACGAGGAAATGCTAAGGAAGAAGGAGGAGCAAGACCGAGAGAAACCTCAGCGTCAGCTCTTTCGCTTTCCTCAT
ATGGGAATGTGGACTAAATTGCGGCCTGGCATCTGGAATTTTCTGGACAGGGCAAGCAAATTGTACGAACTACATGTTTATACAATGGGCAACAAAGTTTATGCCACAGAGATGGCAAAAGTACTTGATCCCACAGGAACTTTATTTGCAGGACGTGTTATTTCGAAGGGTGATGAGGCTGATCTAGATGGAGATGATAG
GCTACCTAAAAGTAAAGATTTAGATGGTGTGTTGGGAATGGAATCTGCAGTGGTAATCATTGATGATTCTGCAAGGGTTTGGCCTCATCATAGGCATAATCTAATTGTGGTTGAAAGATACATGTATTTTCCCTGTAGTAGGCGACAATTTGGACTGCCAGGACTGTCTCTATTAGAAGCAGATGTTGATGAGAGGCCAG
AAGATGGAACACTGGCATCTTCCCTAGCGGTGATTGAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAGCAAAAGATTTTAAAGGATTGTAAAGTGGTTTTTAGTAGAGTTTTTCCAGTTGGAGAAGCACAACCACATCTACACCCTCTGTGGCAG
ATGGCCGAACAATTTGGTGCACTATGCACAACACAAATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAGGTCGATATGTTGTTCACCCAGGGTGGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAACTATGAATCA
TTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGgttagtacctactaccaagacataagatgtgcttgaaaaggttgggagataatacagaagtcacatctttgtt
attgggccttgctgagtaaaatagtttttttcttttttttcttatttgttggttcatttactaagcactatggcatgggagacccaagtaaccttaggccagaaggaatgtctgaattccgcagATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATTTTA
GATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCATGCA
GCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACTGTA
AGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCCTTTCAAAAGAGGTGGCAAACTTATCAATTG
Intron 4 GTGAACTACT ... ATCTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.33 | 56 | 5 | 19 |
| A2 | 19.05 | 17 | 0 | 4 |
| A3 | 18.75 | 52 | 2 | 12 |
| A4 | 24.39 | 31 | 0 | 10 |
| A5 | 36.36 | 14 | 0 | 8 |
| A6 | 50 | 1 | 0 | 1 |
| A7 | 44.44 | 5 | 0 | 4 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 33.33 | 2 | 0 | 1 |
| A10 | 21.05 | 15 | 0 | 4 |
>TRINITY_DN125978_c1_g1_i4 from sample A1 / Example spliced isoformAGAGCTCTGTGTTGCCGCATCGAGTAAGTGTTTCTACGCGTTTGCAAGGAACCGCTCGGCCGTTCAAAAAACTTCTTGCATGGGTTTCCTTTCGTTTCTTCGATCACAAACTCTTCCCCCGAAAACCCCATTAAATTTGGTGCTTTTTTGGCCCTAAACGGAGGAATTTAGATCAGGGGTTCGAATCCTGAATAGAAACC
CTCCTTCTGCATTTGTTTGATGATACCCAGGTCCTAAAACGCTGGTTTTTCCTCGTTTTCTGAAGCATTTGGCCCCTCGAAACCGCGACACCGAAAAAAACTGAAACCTAAAATGACCCCCCCGGTGGAAAATGAAACCCCAATGGAAGACATCGAAGAAGGGGAAATAGCAGATGACGTAGAGACCTCCGGCGAGGTTG
TAAGCGTTCATGATAATTTGCCGATTTCACAGACGAAAGCAGCGAGCTTGAACGATTCGGCCGCTTCTAGGTTTCGCAAAGATGGTGGCAGAAGGGAGGAGAACCCCCCGTCCCACCCCCATACCCCGAGATTTGTTATGGAAGAAGGACCGCCCCCTGGTAGCAATCAATGGAGAGGGGAGAGTTTGCGGTATTCTAAT
GGTAACTATTCTTCTAACCTCTATAATTTGGCATGGGCTAAAGCAGTAGTGCAGAGTAAGCCTACATTTTCATTAGAAACGAACAATAACGACAAAGGGAAGGGAGAAATTTTGAAAAATGGCGGTGGTGGAACTGGAGGGTTATCGAGATCAAGGAGGGATTTGGGATCTGAGAAATCTAATGATTCCAGAAATGGGAG
GAATCCGAAAGCAAAAACCGATGATTATAACGAATTTGTTTCGGCTTCTGGATCTAGTTCGAGTGAAGGGAATGACAGGGTTGTTACTTCTAAGAAGGGAATTGCAGAGAATGGACAAAAAAAGATTTCCGATAAGGTGGCAGTGATTAATATCAGTGATGATGATGATGATGCTGATGATGACGACAATGATGAAAAAA
TTGTGAACAGGACTGGTGACGATGATCGCGAAGAGGGAGAGCTGGAAGAAGGTGAGATTGATGCAGGATTGGCGTCTGCAGTGGGATCTCAGGCATCGAGTTCGGAGGAGCGGTTTGAGAATTCAGGAGATTTTCTTCATGGCGGAGGAAGAATAGATAGCAGCAGGGCATTATCTGATAGACATACTAGGTATAGAGAT
AAGTCGCCTGCAAAAAGTTCTGACAGATCATGGCCAAAAGATCTGGTGAGACAAAGCAGCTATCATCAAGATGATGGAAAGCAGAGATTGAAAGATCAAGAAAGGGAAAGAAAATTAGATGTAATTGCTGAAATGGTCAAGAATGTGACAGTCAAGGATGCGCAGAAGTCATTTGTTGGCGTTTGCCATCAACTTCATAA
AGCTTTGGAATGTCTCAACGAAACTAATCCCCAGATTCCAGTTAACAATGTAGCTAGCCTTATCAAACAGATCTTTGCTGGTATTCGGGCTGTATATGCTGTTCGAAATACATGGAGCGGTATTCAGCAGAATCAGGACCGGAGTAGTGCATTTCCAAGGTTGTTGCAATATGTGAACAGGGAAGCTCGTAATCTTTTTA
CATCTAAACAAATCAAAGAGTTGGAGATCATGTTGCTGTCCGTCCCAACTACCGTCCGTATTTCAAAAGCTGATAGCGCCGAGGAAGAGAAGGAAGAACGACCTTTGTATGCAATGCATTCCAGTCAGGAAAATGCCATCAAACCAGAAGGAAGGGAAATAACCTCACTTAATATTGAAACAACAACAGAGAATATCTTA
ACTAAATCAATTGTTACACTTAATAATGCTAATGAAATAACAAGAGACTCCAGAACTCTCAAACCTAATGAATATACCGCAGCACCAACATCAACAGAAACTGATAGTCGGTCCTCCAGCAGCAACAGTTTATCTGCCTGTGGACCAGAATCATCCAACAACTCTTGTTACAAGCCCTTGGAAGGCTTCGAAGAACCAGA
TGATTCAAACCTTCCCAACCATTTGTATGAAGGTTCAGTGGCAGATTTGAATCGACGAGATTCAAAATGTAATTCTTTGGGAGTTCAACCCAGTCCTAAACTCTCTGATCCATTGGATAGAAGCATTCAAGATGAAAATGCATACTGGCAATCAGATACTGTGAATGCTTTTACATACTATCAAGAAAAGTTTGGAGGAG
GACAACTTTCTAACAGTACCAGGCTCCCTAGCCCAACTCCATCAGAGGATGGTGAGGAGGGAGAAGCAAGCAATCAAGGTGTGGAGGTATCAATGTTCAGTGACGATAAAGAGCCACAGCAGAGTGTAGAGGAGAGAGAAGTGAGGGACATGGATATCAGTGAAAATGTTTCTGTTCCATCTACTTACGGTAGCATTCCA
CAATTGAACTCAGACATGGAATCCCAAGTTGTGGGGCCAAGGATTCAAACTGATTTTTCAGAGGAGCTGGAAGTACCGGCTTTCCAGTCTAAAGATAGTAAAGGTGCAGTTGAGACAGGAAAGTCAATAAATAAAATGACTGGGTCTTCCCGAAAACTCCAACCAAAGAGCAGAGATCCTAGGCGCAGGGTTGCTGAATC
TGAGTTCTATACTATGGACCTGAATAGGCGTCCTTGCCATCCTGATTCTAATGTTATCACAAGGGAACATGTTGTAGGAAGATTTCTTGATAGGAAGCACAAGTCAGATGATGATCTTCCACAGGATCCTCATAATTCTAAACGACTAAGGAATCATTCTGATCACCATCTTTTTTCTAGTGGTTTTCCAGTAGTGACAT
CTGGATGTGGTGGCTGGCTTGAAGAGAATACCGTTATTCCAGCATCTACTGACTGGGATCAAACATCTGAAATGGAAATAGATAGCACAGGAGCGCTGTCAAGGTCCAGTGATTTGAGAAGTGATAGTAATAGTATCTTTACTACAGATACACAAAATGCCACTATAGAAAACAGAAACAAAAGACAGAAAACTGAATCA
TTCTATCAGGCTGGTATTTCAATGGACCCTGTTTCTGAAGCCAACAAAATTCAACCAAATAGTACTGATATTAATTTAAATCCGAGGATGCCATCTGTAGGGGAGGAAGAGAGAGGAGAAAGAAAAGAGACAGAGATAACTGAGATTGGTCAGCAGACAAATAGCTCAGTCGCTTTGAACTCAAATATAATACCTTCTGT
ATTGAAAGATATAGCGGTCAACCCAACTATGCTTATGCACTTGATTAAGCAAGAACAACAACGGTTGTCAGCACAGGCTGCACAAAAGCCTGAGCAATCCCAGCAGACAAATCCTCCCTCGGGTCCTACTATAGCTTCCGTTATCACATCTGGGAAAGTAATAGCAGCTGACCCAAGCATGCTAAAGGATTCTAATCTAC
AGCAGAAAACAGCACAGCAAGCACCGGCAACTGCAACCAAACCTGCAACTCAAGTAACTTCCACGGCTGGAGACCCTGGAAAGCCTCGGATGAAGCCTCGTGATCCCCGTCGTATTCTTCACATGAATTCAGGTAATGATATTGTGAACTTGAATGGGACAGATAAACAGTTTGCCCCAGTGAGCAAGCAGATACGTATG
GCTTCAGGACCAGCAACTACAGAGTCAGCTCCAAAGTTGCAACAGGCTCCTAGTTTGCCTAACATTGAACAGAATTTCAAAGAAAAGCTTGCAAGGATTGCTGAAATGCTAAAAAATTCTGAGATGAGAACGTTACGAGTTATATCATCACAGATGTCTGTTGGTCAATCAGTTAGAGAAACTGACCCCATTGACTTGGA
GCAGGGTTCCATCGAATCTTCTAAATTTCTAGAAGTAGATATTCAACAAGCCATAGAAGTTCCAAAGGATTCTAGCATGGTTATACCCCCCTTGCAGAGTTTGTCAAATGAAAATACCATAATCACACAAAATCATTTGAATCCTTGGGGTGATGTGGATCACCTCTTGGAAGGGCTAAGCGAAGAACAACGAATTGCTA
TCCAACAGGAACGAGCACGGAGAATTGGTGAACAAAATAAAATGTTCAGCGCCAAGAAACTTTGCCTTGTTTTGGACCTTGATCACACACTTCTAAATTCAGCTAAGTTTACTGAAATCGATCCTGTGCACGAGGAAATGCTAAGGAAGAAGGAGGAGCAAGACCGAGAGAAACCTCAGCGTCAGCTCTTTCGCTTTCCT
CATATGGGAATGTGGACTAAATTGCGGCCTGGCATCTGGAATTTTCTGGACAGGGCAAGCAAATTGTACGAACTACATGTTTATACAATGGGCAACAAAGTTTATGCCACAGAGATGGCAAAAGTACTTGATCCCACAGGAACTTTATTTGCAGGACGTGTTATTTCGAAGGGTGATGAGGCTGATCTAGATGGAGATGA
TAGGCTACCTAAAAGTAAAGATTTAGATGGTGTGTTGGGAATGGAATCTGCAGTGGTAATCATTGATGATTCTGCAAGGGTTTGGCCTCATCATAGGCATAATCTAATTGTGGTTGAAAGATACATGTATTTTCCCTGTAGTAGGCGACAATTTGGACTGCCAGGACTGTCTCTATTAGAAGCAGATGTTGATGAGAGGC
CAGAAGATGGAACACTGGCATCTTCCCTAGCGGTGATTGAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAGCAAAAGATTTTAAAGGATTGTAAAGTGGTTTTTAGTAGAGTTTTTCCAGTTGGAGAAGCACAACCACATCTACACCCTCTGTGG
CAGATGGCCGAACAATTTGGTGCACTATGCACAACACAAATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAGGTCGATATGTTGTTCACCCAGGGTGGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAACTATGAA
TCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGGTTAGTACCTACTACCAAGACATAAGATGTGCTTGAAAAGGTTGGGAGATAATACAGAAGTCACATCTTT
GTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTTTTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAATGTCTGAATTCCGCAGATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATT
TTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCAT
GCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACT
GTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCC
>TRINITY_DN125978_c1_g1_i5 from sample A1 / Example unspliced isoform:TTCATCCCGTAGACAAATTTGTAATAGATGTGTGCTAATTTTCTGGATGCATTTTGGTTTGTTACTGATGTTATTTTGCTTTGTTAGGTTGTTGCAATATGTGAACAGGGAAGCTCGTAATCTTTTTACATCTAAACAAATCAAAGAGgtgaactacttgcaacagcaaattgctcttcactaaaaatcatagttccatt
aaaagtgccctaaggatctggatatttagtcttaaaatcatttgttgatgtgttgctctacgatctttacagTTGGAGATCATGTTGCTGTCCGTCCCAACTACCGTCCGTATTTCAAAAGCTGATAGCGCCGAGGAAGAGAAGGAAGAACGACCTTTGTATGCAATGCATTCCAGTCAGGAAAATGCCATCAAACCAGA
AGGAAGGGAAATAACCTCACTTAATATTGAAACAACAACAGAGAATATCTTAACTAAATCAATTGTTACACTTAATAATGCTAATGAAATAACAAGAGACTCCAGAACTCTCAAACCTAATGAATATACCGCAGCACCAACATCAACAGAAACTGATAGTCGGTCCTCCAGCAGCAACAGTTTATCTGCCTGTGGACCAG
AATCATCCAACAACTCTTGTTACAAGCCCTTGGAAGGCTTCGAAGAACCAGATGATTCAAACCTTCCCAACCATTTGTATGAAGGTTCAGTGGCAGATTTGAATCGACGAGATTCAAAATGTAATTCTTTGGGAGTTCAACCCAGTCCTAAACTCTCTGATCCATTGGATAGAAGCATTCAAGATGAAAATGCATACTGG
CAATCAGATACTGTGAATGCTTTTACATACTATCAAGAAAAGTTTGGAGGAGGACAACTTTCTAACAGTACCAGGCTCCCTAGCCCAACTCCATCAGAGGATGGTGAGGAGGGAGAAGCAAGCAATCAAGGTGTGGAGGTATCAATGTTCAGTGACGATAAAGAGCCACAGCAGAGTGTAGAGGAGAGAGAAGTGAGGGA
CATGGATATCAGTGAAAATGTTTCTGTTCCATCTACTTACGGTAGCATTCCACAATTGAACTCAGACATGGAATCCCAAGTTGTGGGGCCAAGGATTCAAACTGATTTTTCAGAGGAGCTGGAAGTACCGGCTTTCCAGTCTAAAGATAGTAAAGGTGCAGTTGAGACAGGAAAGTCAATAAATAAAATGACTGGGTCTT
CCCGAAAACTCCAACCAAAGAGCAGAGATCCTAGGCGCAGGGTTGCTGAATCTGAGTTCTATACTATGGACCTGAATAGGCGTCCTTGCCATCCTGATTCTAATGTTATCACAAGGGAACATGTTGTAGGAAGATTTCTTGATAGGAAGCACAAGTCAGATGATGATCTTCCACAGGATCCTCATAATTCTAAACGACTA
AGGAATCATTCTGATCACCATCTTTTTTCTAGTGGTTTTCCAGTAGTGACATCTGGATGTGGTGGCTGGCTTGAAGAGAATACCGTTATTCCAGCATCTACTGACTGGGATCAAACATCTGAAATGGAAATAGATAGCACAGGAGCGCTGTCAAGGTCCAGTGATTTGAGAAGTGATAGTAATAGTATCTTTACTACAGA
TACACAAAATGCCACTATAGAAAACAGAAACAAAAGACAGAAAACTGAATCATTCTATCAGGCTGGTATTTCAATGGACCCTGTTTCTGAAGCCAACAAAATTCAACCAAATAGTACTGATATTAATTTAAATCCGAGGATGCCATCTGTAGGGGAGGAAGAGAGAGGAGAAAGAAAAGAGACAGAGATAACTGAGATTG
GTCAGCAGACAAATAGCTCAGTCGCTTTGAACTCAAATATAATACCTTCTGTATTGAAAGATATAGCGGTCAACCCAACTATGCTTATGCACTTGATTAAGCAAGAACAACAACGGTTGTCAGCACAGGCTGCACAAAAGCCTGAGCAATCCCAGCAGACAAATCCTCCCTCGGGTCCTACTATAGCTTCCGTTATCACA
TCTGGGAAAGTAATAGCAGCTGACCCAAGCATGCTAAAGGATTCTAATCTACAGCAGAAAACAGCACAGCAAGCACCGGCAACTGCAACCAAACCTGCAACTCAAGTAACTTCCACGGCTGGAGACCCTGGAAAGCCTCGGATGAAGCCTCGTGATCCCCGTCGTATTCTTCACATGAATTCAGGTAATGATATTGTGAA
CTTGAATGGGACAGATAAACAGTTTGCCCCAGTGAGCAAGCAGATACGTATGGCTTCAGGACCAGCAACTACAGAGTCAGCTCCAAAGTTGCAACAGGCTCCTAGTTTGCCTAACATTGAACAGAATTTCAAAGAAAAGCTTGCAAGGATTGCTGAAATGCTAAAAAATTCTGAGATGAGAACGTTACGAGTTATATCAT
CACAGATGTCTGTTGGTCAATCAGTTAGAGAAACTGACCCCATTGACTTGGAGCAGGGTTCCATCGAATCTTCTAAATTTCTAGAAGTAGATATTCAACAAGCCATAGAAGTTCCAAAGGATTCTAGCATGGTTATACCCCCCTTGCAGAGTTTGTCAAATGAAAATACCATAATCACACAAAATCATTTGAATCCTTGG
GGTGATGTGGATCACCTCTTGGAAGGGCTAAGCGAAGAACAACGAATTGCTATCCAACAGGAACGAGCACGGAGAATTGGTGAACAAAATAAAATGTTCAGCGCCAAGAAACTTTGCCTTGTTTTGGACCTTGATCACACACTTCTAAATTCAGCTAAGTTTACTGAAATCGATCCTGTGCACGAGGAAATGCTAAGGAA
GAAGGAGGAGCAAGACCGAGAGAAACCTCAGCGTCAGCTCTTTCGCTTTCCTCATATGGGAATGTGGACTAAATTGCGGCCTGGCATCTGGAATTTTCTGGACAGGGCAAGCAAATTGTACGAACTACATGTTTATACAATGGGCAACAAAGTTTATGCCACAGAGATGGCAAAAGTACTTGATCCCACAGGAACTTTAT
TTGCAGGACGTGTTATTTCGAAGGGTGATGAGGCTGATCTAGATGGAGATGATAGGCTACCTAAAAGTAAAGATTTAGATGGTGTGTTGGGAATGGAATCTGCAGTGGTAATCATTGATGATTCTGCAAGGGTTTGGCCTCATCATAGGCATAATCTAATTGTGGTTGAAAGATACATGTATTTTCCCTGTAGTAGGCGA
CAATTTGGACTGCCAGGACTGTCTCTATTAGAAGCAGATGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCCCTAGCGGTGATTGAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAGCAAAAGATTTTAAAGGATTGTAAAGTGGTTTT
TAGTAGAGTTTTTCCAGTTGGAGAAGCACAACCACATCTACACCCTCTGTGGCAGATGGCCGAACAATTTGGTGCACTATGCACAACACAAATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAGGTCGATATGTTGTTCACCCAGGGTGGCTTGAAGCTT
CAGCACTATTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAACTATGAATCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGGTTAGTACCTACTACCAA
GACATAAGATGTGCTTGAAAAGGTTGGGAGATAATACAGAAGTCACATCTTTGTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTTTTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAATGTCTGAATTCCGCAGATGTGAAGGAAGATGAGGATT
ATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATTTTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAA
GTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCATGCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCC
CATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACTGTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCC
Intron 5 GTTAGTACGG ... TATGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.3 | 54 | 9 | 22 |
| A2 | 26.53 | 18 | 7 | 6 |
| A3 | 13.95 | 37 | 7 | 5 |
| A4 | 22.77 | 39 | 11 | 12 |
| A5 | 25 | 12 | 5 | 3 |
| A6 | 17.95 | 16 | 3 | 4 |
| A7 | 11.69 | 34 | 1 | 8 |
| A8 | 20 | 18 | 4 | 5 |
| A9 | 13.79 | 25 | 7 | 1 |
| A10 | 23.81 | 8 | 2 | 3 |
>TRINITY_DN125978_c1_g1_i4 from sample A1 / Example spliced isoformAGAGCTCTGTGTTGCCGCATCGAGTAAGTGTTTCTACGCGTTTGCAAGGAACCGCTCGGCCGTTCAAAAAACTTCTTGCATGGGTTTCCTTTCGTTTCTTCGATCACAAACTCTTCCCCCGAAAACCCCATTAAATTTGGTGCTTTTTTGGCCCTAAACGGAGGAATTTAGATCAGGGGTTCGAATCCTGAATAGAAACC
CTCCTTCTGCATTTGTTTGATGATACCCAGGTCCTAAAACGCTGGTTTTTCCTCGTTTTCTGAAGCATTTGGCCCCTCGAAACCGCGACACCGAAAAAAACTGAAACCTAAAATGACCCCCCCGGTGGAAAATGAAACCCCAATGGAAGACATCGAAGAAGGGGAAATAGCAGATGACGTAGAGACCTCCGGCGAGGTTG
TAAGCGTTCATGATAATTTGCCGATTTCACAGACGAAAGCAGCGAGCTTGAACGATTCGGCCGCTTCTAGGTTTCGCAAAGATGGTGGCAGAAGGGAGGAGAACCCCCCGTCCCACCCCCATACCCCGAGATTTGTTATGGAAGAAGGACCGCCCCCTGGTAGCAATCAATGGAGAGGGGAGAGTTTGCGGTATTCTAAT
GGTAACTATTCTTCTAACCTCTATAATTTGGCATGGGCTAAAGCAGTAGTGCAGAGTAAGCCTACATTTTCATTAGAAACGAACAATAACGACAAAGGGAAGGGAGAAATTTTGAAAAATGGCGGTGGTGGAACTGGAGGGTTATCGAGATCAAGGAGGGATTTGGGATCTGAGAAATCTAATGATTCCAGAAATGGGAG
GAATCCGAAAGCAAAAACCGATGATTATAACGAATTTGTTTCGGCTTCTGGATCTAGTTCGAGTGAAGGGAATGACAGGGTTGTTACTTCTAAGAAGGGAATTGCAGAGAATGGACAAAAAAAGATTTCCGATAAGGTGGCAGTGATTAATATCAGTGATGATGATGATGATGCTGATGATGACGACAATGATGAAAAAA
TTGTGAACAGGACTGGTGACGATGATCGCGAAGAGGGAGAGCTGGAAGAAGGTGAGATTGATGCAGGATTGGCGTCTGCAGTGGGATCTCAGGCATCGAGTTCGGAGGAGCGGTTTGAGAATTCAGGAGATTTTCTTCATGGCGGAGGAAGAATAGATAGCAGCAGGGCATTATCTGATAGACATACTAGGTATAGAGAT
AAGTCGCCTGCAAAAAGTTCTGACAGATCATGGCCAAAAGATCTGGTGAGACAAAGCAGCTATCATCAAGATGATGGAAAGCAGAGATTGAAAGATCAAGAAAGGGAAAGAAAATTAGATGTAATTGCTGAAATGGTCAAGAATGTGACAGTCAAGGATGCGCAGAAGTCATTTGTTGGCGTTTGCCATCAACTTCATAA
AGCTTTGGAATGTCTCAACGAAACTAATCCCCAGATTCCAGTTAACAATGTAGCTAGCCTTATCAAACAGATCTTTGCTGGTATTCGGGCTGTATATGCTGTTCGAAATACATGGAGCGGTATTCAGCAGAATCAGGACCGGAGTAGTGCATTTCCAAGGTTGTTGCAATATGTGAACAGGGAAGCTCGTAATCTTTTTA
CATCTAAACAAATCAAAGAGTTGGAGATCATGTTGCTGTCCGTCCCAACTACCGTCCGTATTTCAAAAGCTGATAGCGCCGAGGAAGAGAAGGAAGAACGACCTTTGTATGCAATGCATTCCAGTCAGGAAAATGCCATCAAACCAGAAGGAAGGGAAATAACCTCACTTAATATTGAAACAACAACAGAGAATATCTTA
ACTAAATCAATTGTTACACTTAATAATGCTAATGAAATAACAAGAGACTCCAGAACTCTCAAACCTAATGAATATACCGCAGCACCAACATCAACAGAAACTGATAGTCGGTCCTCCAGCAGCAACAGTTTATCTGCCTGTGGACCAGAATCATCCAACAACTCTTGTTACAAGCCCTTGGAAGGCTTCGAAGAACCAGA
TGATTCAAACCTTCCCAACCATTTGTATGAAGGTTCAGTGGCAGATTTGAATCGACGAGATTCAAAATGTAATTCTTTGGGAGTTCAACCCAGTCCTAAACTCTCTGATCCATTGGATAGAAGCATTCAAGATGAAAATGCATACTGGCAATCAGATACTGTGAATGCTTTTACATACTATCAAGAAAAGTTTGGAGGAG
GACAACTTTCTAACAGTACCAGGCTCCCTAGCCCAACTCCATCAGAGGATGGTGAGGAGGGAGAAGCAAGCAATCAAGGTGTGGAGGTATCAATGTTCAGTGACGATAAAGAGCCACAGCAGAGTGTAGAGGAGAGAGAAGTGAGGGACATGGATATCAGTGAAAATGTTTCTGTTCCATCTACTTACGGTAGCATTCCA
CAATTGAACTCAGACATGGAATCCCAAGTTGTGGGGCCAAGGATTCAAACTGATTTTTCAGAGGAGCTGGAAGTACCGGCTTTCCAGTCTAAAGATAGTAAAGGTGCAGTTGAGACAGGAAAGTCAATAAATAAAATGACTGGGTCTTCCCGAAAACTCCAACCAAAGAGCAGAGATCCTAGGCGCAGGGTTGCTGAATC
TGAGTTCTATACTATGGACCTGAATAGGCGTCCTTGCCATCCTGATTCTAATGTTATCACAAGGGAACATGTTGTAGGAAGATTTCTTGATAGGAAGCACAAGTCAGATGATGATCTTCCACAGGATCCTCATAATTCTAAACGACTAAGGAATCATTCTGATCACCATCTTTTTTCTAGTGGTTTTCCAGTAGTGACAT
CTGGATGTGGTGGCTGGCTTGAAGAGAATACCGTTATTCCAGCATCTACTGACTGGGATCAAACATCTGAAATGGAAATAGATAGCACAGGAGCGCTGTCAAGGTCCAGTGATTTGAGAAGTGATAGTAATAGTATCTTTACTACAGATACACAAAATGCCACTATAGAAAACAGAAACAAAAGACAGAAAACTGAATCA
TTCTATCAGGCTGGTATTTCAATGGACCCTGTTTCTGAAGCCAACAAAATTCAACCAAATAGTACTGATATTAATTTAAATCCGAGGATGCCATCTGTAGGGGAGGAAGAGAGAGGAGAAAGAAAAGAGACAGAGATAACTGAGATTGGTCAGCAGACAAATAGCTCAGTCGCTTTGAACTCAAATATAATACCTTCTGT
ATTGAAAGATATAGCGGTCAACCCAACTATGCTTATGCACTTGATTAAGCAAGAACAACAACGGTTGTCAGCACAGGCTGCACAAAAGCCTGAGCAATCCCAGCAGACAAATCCTCCCTCGGGTCCTACTATAGCTTCCGTTATCACATCTGGGAAAGTAATAGCAGCTGACCCAAGCATGCTAAAGGATTCTAATCTAC
AGCAGAAAACAGCACAGCAAGCACCGGCAACTGCAACCAAACCTGCAACTCAAGTAACTTCCACGGCTGGAGACCCTGGAAAGCCTCGGATGAAGCCTCGTGATCCCCGTCGTATTCTTCACATGAATTCAGGTAATGATATTGTGAACTTGAATGGGACAGATAAACAGTTTGCCCCAGTGAGCAAGCAGATACGTATG
GCTTCAGGACCAGCAACTACAGAGTCAGCTCCAAAGTTGCAACAGGCTCCTAGTTTGCCTAACATTGAACAGAATTTCAAAGAAAAGCTTGCAAGGATTGCTGAAATGCTAAAAAATTCTGAGATGAGAACGTTACGAGTTATATCATCACAGATGTCTGTTGGTCAATCAGTTAGAGAAACTGACCCCATTGACTTGGA
GCAGGGTTCCATCGAATCTTCTAAATTTCTAGAAGTAGATATTCAACAAGCCATAGAAGTTCCAAAGGATTCTAGCATGGTTATACCCCCCTTGCAGAGTTTGTCAAATGAAAATACCATAATCACACAAAATCATTTGAATCCTTGGGGTGATGTGGATCACCTCTTGGAAGGGCTAAGCGAAGAACAACGAATTGCTA
TCCAACAGGAACGAGCACGGAGAATTGGTGAACAAAATAAAATGTTCAGCGCCAAGAAACTTTGCCTTGTTTTGGACCTTGATCACACACTTCTAAATTCAGCTAAGTTTACTGAAATCGATCCTGTGCACGAGGAAATGCTAAGGAAGAAGGAGGAGCAAGACCGAGAGAAACCTCAGCGTCAGCTCTTTCGCTTTCCT
CATATGGGAATGTGGACTAAATTGCGGCCTGGCATCTGGAATTTTCTGGACAGGGCAAGCAAATTGTACGAACTACATGTTTATACAATGGGCAACAAAGTTTATGCCACAGAGATGGCAAAAGTACTTGATCCCACAGGAACTTTATTTGCAGGACGTGTTATTTCGAAGGGTGATGAGGCTGATCTAGATGGAGATGA
TAGGCTACCTAAAAGTAAAGATTTAGATGGTGTGTTGGGAATGGAATCTGCAGTGGTAATCATTGATGATTCTGCAAGGGTTTGGCCTCATCATAGGCATAATCTAATTGTGGTTGAAAGATACATGTATTTTCCCTGTAGTAGGCGACAATTTGGACTGCCAGGACTGTCTCTATTAGAAGCAGATGTTGATGAGAGGC
CAGAAGATGGAACACTGGCATCTTCCCTAGCGGTGATTGAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAGCAAAAGATTTTAAAGGATTGTAAAGTGGTTTTTAGTAGAGTTTTTCCAGTTGGAGAAGCACAACCACATCTACACCCTCTGTGG
CAGATGGCCGAACAATTTGGTGCACTATGCACAACACAAATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAGGTCGATATGTTGTTCACCCAGGGTGGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAACTATGAA
TCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTCACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGGTTAGTACCTACTACCAAGACATAAGATGTGCTTGAAAAGGTTGGGAGATAATACAGAAGTCACATCTTT
GTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTTTTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAATGTCTGAATTCCGCAGATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATT
TTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGTAAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCAT
GCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGTCATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACT
GTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTTATGATTCC
>TRINITY_DN125978_c1_g1_i2 from sample A1 / Example unspliced isoform:AGAGCTCTGTGTTGCCGCATCGAGTAAGTGTTTCTACGCGTTTGCAAGGAACCGCTCGGCCGTTCAAAAAACTTCTTGCATGGGTTTCCTTTCGTTTCTTCGATCACAAACTCTTCCCCCGAAAACCCCATTAAATTTGGTGCTTTTTTGGCCCTAAACGGAGGAATTTAGATCAGGGGTTCGAATCCTGAATAGAAACC
CTCCTTCTGCATTTGTTTGATGATACCCAGGTCCTAAAACGCTGGTTTTTCCTCGTTTTCTGAAGCATTTGGCCCCTCGAAACCGCGACACCGAAAAAAACTGAAACCTAAAATGACCCCCCCGGTGGAAAATGAAACCCCAATGGAAGACATCGAAGAAGGGGAAATAGCAGATGACGTAGAGACCTCCGGCGAGGTTG
TAAGCGTTCATGATAATTTGCCGATTTCACAGACGAAAGCAGCGAGCTTGAACGATTCGGCCGCTTCTAGGTTTCGCAAAGATGGTGGCAGAAGGGAGGAGAACCCCCCGTCCCACCCCCATACCCCGAGATTTGTTATGGAAGAAGGACCGCCCCCTGGTAGCAATCAATGGAGAGGGGAGAGTTTGCGGTATTCTAAT
GGTAACTATTCTTCTAACCTCTATAATTTGGCATGGGCTAAAGCAGTAGTGCAGAGTAAGCCTACATTTTCATTAGAAACGAACAATAACGACAAAGGGAAGGGAGAAATTTTGAAAAATGGCGGTGGTGGAACTGGAGGGTTATCGAGATCAAGGAGGGATTTGGGATCTGAGAAATCTAATGATTCCAGAAATGGGAG
GAATCCGAAAGCAAAAACCGATGATTATAACGAATTTGTTTCGGCTTCTGGATCTAGTTCGAGTGAAGGGAATGACAGGGTTGTTACTTCTAAGAAGGGAATTGCAGAGAATGGACAAAAAAAGATTTCCGATAAGGTGGCAGTGATTAATATCAGTGATGATGATGATGATGCTGATGATGACGACAATGATGAAAAAA
TTGTGAACAGGACTGGTGACGATGATCGCGAAGAGGGAGAGCTGGAAGAAGGTGAGATTGATGCAGGATTGGCGTCTGCAGTGGGATCTCAGGCATCGAGTTCGGAGGAGCGGTTTGAGAATTCAGGAGATTTTCTTCATGGCGGAGGAAGAATAGATAGCAGCAGGGCATTATCTGATAGACATACTAGGTATAGAGAT
AAGTCGCCTGCAAAAAGTTCTGACAGATCATGGCCAAAAGATCTGGTGAGACAAAGCAGCTATCATCAAGATGATGGAAAGCAGAGATTGAAAGATCAAGAAAGGGAAAGAAAATTAGATGTAATTGCTGAAATGGTCAAGAATGTGACAGTCAAGGATGCGCAGAAGTCATTTGTTGGCGTTTGCCATCAACTTCATAA
AGCTTTGGAATGTCTCAACGAAACTAATCCCCAGATTCCAGTTAACAATGTAGCTAGCCTTATCAAACAGATCTTTGCTGGTATTCGGGCTGTATATGCTGTTCGAAATACATGGAGCGGTATTCAGCAGAATCAGGACCGGAGTAGTGCATTTCCAAGGTTGTTGCAATATGTGAACAGGGAAGCTCGTAATCTTTTTA
CATCTAAACAAATCAAAGAGTTGGAGATCATGTTGCTGTCCGTCCCAACTACCGTCCGTATTTCAAAAGCTGATAGCGCCGAGGAAGAGAAGGAAGAACGACCTTTGTATGCAATGCATTCCAGTCAGGAAAATGCCATCAAACCAGAAGGAAGGGAAATAACCTCACTTAATATTGAAACAACAACAGAGAATATCTTA
ACTAAATCAATTGTTACACTTAATAATGCTAATGAAATAACAAGAGACTCCAGAACTCTCAAACCTAATGAATATACCGCAGCACCAACATCAACAGAAACTGATAGTCGGTCCTCCAGCAGCAACAGTTTATCTGCCTGTGGACCAGAATCATCCAACAACTCTTGTTACAAGCCCTTGGAAGGCTTCGAAGAACCAGA
TGATTCAAACCTTCCCAACCATTTGTATGAAGGTTCAGTGGCAGATTTGAATCGACGAGATTCAAAATGTAATTCTTTGGGAGTTCAACCCAGTCCTAAACTCTCTGATCCATTGGATAGAAGCATTCAAGATGAAAATGCATACTGGCAATCAGATACTGTGAATGCTTTTACATACTATCAAGAAAAGTTTGGAGGAG
GACAACTTTCTAACAGTACCAGGCTCCCTAGCCCAACTCCATCAGAGGATGGTGAGGAGGGAGAAGCAAGCAATCAAGGTGTGGAGGTATCAATGTTCAGTGACGATAAAGAGCCACAGCAGAGTGTAGAGGAGAGAGAAGTGAGGGACATGGATATCAGTGAAAATGTTTCTGTTCCATCTACTTACGGTAGCATTCCA
CAATTGAACTCAGACATGGAATCCCAAGTTGTGGGGCCAAGGATTCAAACTGATTTTTCAGAGGAGCTGGAAGTACCGGCTTTCCAGTCTAAAGATAGTAAAGGTGCAGTTGAGACAGGAAAGTCAATAAATAAAATGACTGGGTCTTCCCGAAAACTCCAACCAAAGAGCAGAGATCCTAGGCGCAGGGTTGCTGAATC
TGAGTTCTATACTATGGACCTGAATAGGCGTCCTTGCCATCCTGATTCTAATGTTATCACAAGGGAACATGTTGTAGGAAGATTTCTTGATAGGAAGCACAAGTCAGATGATGATCTTCCACAGGATCCTCATAATTCTAAACGACTAAGGAATCATTCTGATCACCATCTTTTTTCTAGTGGTTTTCCAGTAGTGACAT
CTGGATGTGGTGGCTGGCTTGAAGAGAATACCGTTATTCCAGCATCTACTGACTGGGATCAAACATCTGAAATGGAAATAGATAGCACAGGAGCGCTGTCAAGGTCCAGTGATTTGAGAAGTGATAGTAATAGTATCTTTACTACAGATACACAAAATGCCACTATAGAAAACAGAAACAAAAGACAGAAAACTGAATCA
TTCTATCAGGCTGGTATTTCAATGGACCCTGTTTCTGAAGCCAACAAAATTCAACCAAATAGTACTGATATTAATTTAAATCCGAGGATGCCATCTGTAGGGGAGGAAGAGAGAGGAGAAAGAAAAGAGACAGAGATAACTGAGATTGGTCAGCAGACAAATAGCTCAGTCGCTTTGAACTCAAATATAATACCTTCTGT
ATTGAAAGATATAGCGGTCAACCCAACTATGCTTATGCACTTGATTAAGCAAGAACAACAACGGTTGTCAGCACAGGCTGCACAAAAGCCTGAGCAATCCCAGCAGACAAATCCTCCCTCGGGTCCTACTATAGCTTCCGTTATCACATCTGGGAAAGTAATAGCAGCTGACCCAAGCATGCTAAAGGATTCTAATCTAC
AGCAGAAAACAGCACAGCAAGCACCGGCAACTGCAACCAAACCTGCAACTCAAGTAACTTCCACGGCTGGAGACCCTGGAAAGCCTCGGATGAAGCCTCGTGATCCCCGTCGTATTCTTCACATGAATTCAGGTAATGATATTGTGAACTTGAATGGGACAGATAAACAGTTTGCCCCAGTGAGCAAGCAGATACGTATG
GCTTCAGGACCAGCAACTACAGAGTCAGCTCCAAAGTTGCAACAGGCTCCTAGTTTGCCTAACATTGAACAGAATTTCAAAGAAAAGCTTGCAAGGATTGCTGAAATGCTAAAAAATTCTGAGATGAGAACGTTACGAGTTATATCATCACAGATGTCTGTTGGTCAATCAGTTAGAGAAACTGACCCCATTGACTTGGA
GCAGGGTTCCATCGAATCTTCTAAATTTCTAGAAGTAGATATTCAACAAGCCATAGAAGTTCCAAAGGATTCTAGCATGGTTATACCCCCCTTGCAGAGTTTGTCAAATGAAAATACCATAATCACACAAAATCATTTGAATCCTTGGGGTGATGTGGATCACCTCTTGGAAGGGCTAAGCGAAGAACAACGAATTGCTA
TCCAACAGGAACGAGCACGGAGAATTGGTGAACAAAATAAAATGTTCAGCGCCAAGAAACTTTGCCTTGTTTTGGACCTTGATCACACACTTCTAAATTCAGCTAAGTTTACTGAAATCGATCCTGTGCACGAGGAAATGCTAAGGAAGAAGGAGGAGCAAGACCGAGAGAAACCTCAGCGTCAGCTCTTTCGCTTTCCT
CATATGGGAATGTGGACTAAATTGCGGCCTGGCATCTGGAATTTTCTGGACAGGgttagtacgggttggattgaaatatgaatatctttgcaaacagtgtagtttcttataggaagcatttgatttacaatgtgaaattagcagcttcgtttcatgcgaacagttggatctgttctttcattcatataattcattctatg
atggtttatgatgcagGCAAGCAAATTGTACGAACTACATGTTTATACAATGGGCAACAAAGTTTATGCCACAGAGATGGCAAAAGTACTTGATCCCACAGGAACTTTATTTGCAGGACGTGTTATTTCGAAGGGTGATGAGGCTGATCTAGATGGAGATGATAGGCTACCTAAAAGTAAAGATTTAGATGGTGTGTTGG
GAATGGAATCTGCAGTGGTAATCATTGATGATTCTGCAAGGGTTTGGCCTCATCATAGGCATAATCTAATTGTGGTTGAAAGATACATGTATTTTCCCTGTAGTAGGCGACAATTTGGACTGCCAGGACTGTCTCTATTAGAAGCAGATGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCCCTAGCGGTGATT
GAGAAAATCCACTATAATTTTTTCTCAAATAAGCTGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAGCAAAAGATTTTAAAGGATTGTAAAGTGGTTTTTAGTAGAGTTTTTCCAGTTGGAGAAGCACAACCACATCTACACCCTCTGTGGCAGATGGCCGAACAATTTGGTGCACTATGCACAACACA
AATTGATGATGAAGTGACTCATGTCGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACAGGTCGATATGTTGTTCACCCAGGGTGGCTTGAAGCTTCAGCACTATTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAACTATGAATCATTTTCCATGTCCCCCACATTAATCTAATGAGGTTC
ACTATGCCCAACATGTTCTGGTAATATTGACAATCGGCAGTGTAAACAGGCATAGTAAAACATATTAAGATGTAGAATCGACAATCAAACGGGTTAGTACCTACTACCAAGACATAAGATGTGCTTGAAAAGGTTGGGAGATAATACAGAAGTCACATCTTTGTTATTGGGCCTTGCTGAGTAAAATAGTTTTTTTCTTT
TTTTTCTTATTTGTTGGTTCATTTACTAAGCACTATGGCATGGGAGACCCAAGTAACCTTAGGCCAGAAGGAATGTCTGAATTCCGCAGATGTGAAGGAAGATGAGGATTATGTGCTTTTCAACCACAGACGTGATTGAAAGAATTTCGGCGGTTAAGAATTTTAGATTGGGCCTTGAGACTAACCCATTGGTCACTTGT
AAGATATTGTGGCAGGATGAATTTTCTCGAAAGTGTAAATAGGTCAAGTGCTGAAGGCATAGAGGGGTTACTAATACCAATTTCTGTTATAGAGAGTATCCTTATATCAAGTCATTTGCTTAGGGAGCAATTTACTTGCTTAAAGGGTTTAAGTTTTGTCATGCAGCTAAAAGGGTGGCTAAAAAGGAACCTCTTTCAGT
CATTTCACAAATACTGTTGGAAATAAACAAGAATTGGTGTTTTCAAATTCTATAAATTTCATAACTGGCCTTTGATGAAAGGAAGGAGATAGGATGACAATTGATAGGCCCATTGTGGTCCCAATAAGCACTTGATTGAGTCTCCCCAAAAGCCTAGCAACTGTAAGCACTGTTATAAGTTACATCTCATTAAGCAGTTT
ATGATTCC