sp|Q9ZSK2|ADF6_ARATH ----> Actin-depolymerizing factor 6
Intron 1 GTTAGTAGGG ... TGCATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.38 | 36 | 44 | 124 |
| A2 | 81.31 | 32 | 63 | 141 |
| A3 | 79.44 | 47 | 56 | 184 |
| A4 | 78.31 | 33 | 47 | 120.3 |
| A5 | 76.9 | 25 | 41 | 83.7 |
| A6 | 80.43 | 111 | 150 | 460.3 |
| A7 | 83.06 | 124 | 173 | 611 |
| A8 | 79.5 | 98 | 144 | 385 |
| A9 | 84.66 | 104 | 169 | 579 |
| A10 | 86.97 | 96 | 174 | 645 |
>TRINITY_DN38082_c0_g1_i1 from sample A8 / Example spliced isoformCAAAATCTAAGATATTTTATTTCTGCATCCAAACGTTTTCGAGTTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGTCAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTT
CAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCGACACGTGGGATCCAAAAGAAAGAGGGAGCAGACATTCATTGTCATTGGGATAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGC
ATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTA
TGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGA
TCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTAC
TGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTG
TAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACATATAAATTAATCTGCTGATGAATACGAGTTTCCTTGCTTTTATTGTTTTGAGTAAGTCTGATCTATAG
TGCAAATTTGAATGTAGCAATACAGAGCAGAGAGGTTAATTAATTGCAAATGACCAAGTTGAG
>TRINITY_DN38082_c0_g1_i3 from sample A8 / Example unspliced isoform:CAAAATCTAAGATATTTTATTTCTGCATCCAAACGTTTTCGAGTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGTCAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTC
AAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCGACgttagtaggggtccacaatggtggagattgatgcacgcattcaaattccgttcatgcatcagagttttcataggtctctaatctctatgcatgtgatgctgat
ttgctttgcattgcagACGTGGGATCCAAAAGAAAGAGGGAGCAGACATTCATTGTCATTGGGATGTGGGTCATGCCATGGCGCGCTCCATAACCTTTTTCAATACATTTATTCTTTATTTAATTCTCCTTGTATTTGCCTTTAAATGGAGATGAATTCAGCATCAGGGAGGCACAGATATGTTTAGCATTTAAGTGGTT
TTCTTTTGTTGGGAAAGAAAGATTATAGGTGTTGTTCTTCAATTCCAGTGTTCTTCATCACAGAGGTTTCTTGATTCTTCTTGTTTTGTTCGCGCAGAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAA
GAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGT
CTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAA
CTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAA
AAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGA
TTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACATATAAATTAATCTGCTGATGAATACGAGTTTCCTTGCTTTTATTGTTTTGAGTAAGTCTGATCTATAGTGCAAATTTGAATGTAGCAATACAGAGCAGAGAGGTTAATTAATTGCAAA
TGACCAAGTTGAG
Intron 2 GTTAGCATTT ... TTATTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.38 | 277.4 | 39.8 | 71 |
| A2 | 16.46 | 248.7 | 42 | 49 |
| A3 | 16.25 | 304.1 | 54.2 | 59 |
| A4 | 20.86 | 189.7 | 41.2 | 50 |
| A5 | 15.11 | 118 | 23.2 | 21 |
| A6 | 16.49 | 1661.5 | 272.5 | 328 |
| A7 | 15.43 | 1688.5 | 300.8 | 308 |
| A8 | 17.54 | 1485.7 | 189.7 | 316 |
| A9 | 16.15 | 1656.8 | 242.3 | 319 |
| A10 | 15.16 | 1455.4 | 277.8 | 260 |
>TRINITY_DN94905_c0_g1_i1 from sample A4 / Example spliced isoformATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCG
ACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAGCAGACATTCATTGTCATTGGGATAAGCAGCAGCAGCAGCCGCCATGGCGATGG
CATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGA
TATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGT
CATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAAT
TACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGAT
CACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACATATAAAAA
>TRINITY_DN94905_c0_g1_i4 from sample A4 / Example unspliced isoform:ATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCG
ACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAGCAGACATTCATTGTCATTGGGATGTGGGTCATGCCATGGCGCGCTCCATAACC
TTTTTCAATACATTTATTCTTTATTTAATTCTCCTTGTATTTGCCTTTAAATGGAGATGAATTCAGCATCAGGGAGGCACAGATATGTTTAGCATTTAAGTGGTTTTCTTTTGTTGGGAAAGAAAGATTATAGGTGTTGTTCTTCAATTCCAGTGTTCTTCATCACAGAGGTTTCTTGATTCTTCTTGTTTTGTTCGCGC
AGAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATT
TCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGgttagcatttcatttacttatatatcctctggtatttctttgggtcttttggtaggtaatattacactaaactagtaggtcgggcagtggtttagct
gtagatagttgtgtgtctgccacaactaacccaagttcaatgctcagtgcatttctgtatggtctttacctgagaattccatctgaagttgtgaatgttgtggcattattggtagGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCAC
TATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGA
TCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTT
GCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACAT
ATAAAAA
Intron 3 GTCTCTAATC ... GTTCGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.38 | 117 | 97 | 245 |
| A2 | 57.64 | 133 | 127 | 235 |
| A3 | 56.3 | 149 | 141 | 243 |
| A4 | 56.13 | 102 | 96 | 165 |
| A5 | 61.11 | 63 | 71 | 127 |
| A6 | 59.13 | 505 | 391 | 1070 |
| A7 | 54.24 | 694 | 511 | 1134 |
| A8 | 54.01 | 450 | 326 | 731 |
| A9 | 54.84 | 616 | 487 | 1009 |
| A10 | 57.42 | 557 | 551 | 951 |
>TRINITY_DN94905_c0_g1_i6 from sample A4 / Example spliced isoformATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCG
ACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTG
TTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGT
>TRINITY_DN94905_c0_g1_i4 from sample A4 / Example unspliced isoform:ATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCG
ACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGgtctctaatctctatgcatgtgatgctgatttgctttgcattgcagacgtgggatccaaaagaaagagggagcagacattcattgtcattgggatgtgggtcatgccatggcgcgctccataacc
tttttcaatacatttattctttatttaattctccttgtatttgcctttaaatggagatgaattcagcatcagggaggcacagatatgtttagcatttaagtggttttcttttgttgggaaagaaagattataggtgttgttcttcaattccagtgttcttcatcacagaggtttcttgattcttcttgttttgttcgcgc
agAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATT
TCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGTTAGCATTTCATTTACTTATATATCCTCTGGTATTTCTTTGGGTCTTTTGGTAGGTAATATTACACTAAACTAGTAGGTCGGGCAGTGGTTTAGCT
GTAGATAGTTGTGTGTCTGCCACAACTAACCCAAGTTCAATGCTCAGTGCATTTCTGTATGGTCTTTACCTGAGAATTCCATCTGAAGTTGTGAATGTTGTGGCATTATTGGTAGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCAC
TATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGA
TCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTT
GCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACAT
ATAAAAA
Intron 4 GCGCGCTCCA ... GTTCGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.38 | 239 | 107 | 232.4 |
| A2 | 38.44 | 246 | 88 | 221.6 |
| A3 | 36.15 | 282 | 94 | 228 |
| A4 | 38.46 | 195 | 90 | 155.3 |
| A5 | 40.53 | 118 | 43 | 119.4 |
| A6 | 43.33 | 903 | 381 | 1011.3 |
| A7 | 38.41 | 1176 | 424 | 1058.5 |
| A8 | 37.28 | 799 | 279 | 681.2 |
| A9 | 35.56 | 1133 | 322 | 942.1 |
| A10 | 36.69 | 1100 | 399 | 887.7 |
>TRINITY_DN105424_c0_g1_i1 from sample A2 / Example spliced isoformGGGGAAGATCTCATTGCATGTCTCTAACAAAATTAGCTTACCAAAACTATAACCCAATAAGAAAAATACTTATTATATAACTTCTTTTCATATTTTGTCAAATTCTCCACAACAAAATCTAAGATATTTTATTTCTGCATCCAAACGTTTTCGAGTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGT
CAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTT
TTAAGCGACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAGCAGACATTCATTGTCATTGGGATGTGGGTCATGCCATGAAGCAGCA
GCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATC
CCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATC
CTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTC
TTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAAC
ACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAA
>TRINITY_DN105424_c0_g1_i3 from sample A2 / Example unspliced isoform:GGGGAAGATCTCATTGCATGTCTCTAACAAAATTAGCTTACCAAAACTATAACCCAATAAGAAAAATACTTATTATATAACTTCTTTTCATATTTTGTCAAATTCTCCACAACAAAATCTAAGATATTTTATTTCTGCATCCAAACGTTTTCGAGTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGT
CAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATTTTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTT
TTAAGCGACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAGCAGACATTCATTGTCATTGGGATGTGGGTCATGCCATGgcgcgctc
cataacctttttcaatacatttattctttatttaattctccttgtatttgcctttaaatggagatgaattcagcatcagggaggcacagatatgtttagcatttaagtggttttcttttgttgggaaagaaagattataggtgttgttcttcaattccagtgttcttcatcacagaggtttcttgattcttcttgttttg
ttcgcgcagAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGTATGCACACACCTGGTTCTCCTATCTGTTCTTTGTTCTCTCTTGTAGCTCTGGATAAAGTCTTGATAATGTTTGGTAGGAATTGTGTTGTTTCAATTCTCTGTGAAGCAAAATTTTTGGGATACAAGTTAATTCTAGCACATACCTATC
TGAATCCAGTTGTAGCTTTGTAGGGTGCGGGTGATCATGAATCTTTTTTAAGCACATACCCATCTGAATCTCAGTTTTTGTATTGAATCTCATAGAGATTGTATACTGGGTGCTTTGACTATAGATATTAAGCGAAACCCATCTAAAGCCCTCTGTATATTGAATCTTGAATATATTGTGTTTGTGTATTATTACCTGTT
TTGAATTCGCAGAGCCATTGAAACCAGAGTTTGTATGAATTTATCAGAAACCCATATATGAGTTCTGTATTGAAGAATCTGGTGCATTGAATATAGATTTCAGGGCAGATCCATCTAAATCCCTAGTTTTGTGTGGAATCTAGAATATATTGTATATCAGGTTTTCTACATATAGATATTACGTTTTCTAAATATAGATG
TTAGCACAGACCCATCCAAACTTGACCCTGATATACAGACCCATCTAAACCTGTCTCTGATATGCACTGCAACATGAAGAATGAAAACACATATCTTGATCTCACACAAATGAAACTTGGGATGCATAGCCTTTAAAATCTCAAGAGTGCCTATCAGACCTAGGTTTAGATGGCTCTGTGCTAGTTTATGTGCTGGGAAT
ATTGTCAGATGGAATTTCATTTTGTGAACAGAAATACTAGCCCACAGATCTAAGGCTGTGAAAGTCAGTAATTGGGTTGATGCTGTTGTTTTATTCAGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAG
TCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGC
TACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAG
GATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTG
CCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTG
TATCTTTAAA
Intron 5 GTATGCACAC ... TTTTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.57 | 332.6 | 48 | 93 |
| A2 | 17.41 | 257.2 | 50 | 58 |
| A3 | 15.05 | 304.8 | 47 | 60 |
| A4 | 18.26 | 245.6 | 36 | 73 |
| A5 | 14.06 | 134.8 | 19 | 25 |
| A6 | 15.53 | 1063.8 | 229 | 162 |
| A7 | 11.76 | 1314.8 | 170 | 179 |
| A8 | 11.77 | 886.2 | 112 | 123 |
| A9 | 12.36 | 1222.4 | 146 | 196 |
| A10 | 12.86 | 1203.8 | 147 | 205 |
>TRINITY_DN114584_c0_g1_i4 from sample A1 / Example spliced isoformGTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGTCAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATT
TTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCGACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAG
CAGACATTCATTGTCATTGGGATGTGGGTCATGCCATGGCGCGCTCCATAACCTTTTTCAATACATTTATTCTTTATTTAATTCTCCTTGTATTTGCCTTTAAATGGAGATGAATTCAGCATCAGGGAGGCACAGATATGTTTAGCATTTAAGTGGTTTTCTTTTGTTGGGAAAGAAAGATTATAGGTGTTGTTCTTCAA
TTCCAGTGTTCTTCATCACAGAGGTTTCTTGATTCTTCTTGTTTTGTTCGCGCAGAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTC
CAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTA
CATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGA
TCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCC
CAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTA
TCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACATATAAAA
>TRINITY_DN114584_c0_g1_i3 from sample A1 / Example unspliced isoform:GTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGTCAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATT
TTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCGACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAG
CAGACATTCATTGTCATTGGGATGTGGGTCATGCCATGGCGCGCTCCATAACCTTTTTCAATACATTTATTCTTTATTTAATTCTCCTTGTATTTGCCTTTAAATGGAGATGAATTCAGCATCAGGGAGGCACAGATATGTTTAGCATTTAAGTGGTTTTCTTTTGTTGGGAAAGAAAGATTATAGGTGTTGTTCTTCAA
TTCCAGTGTTCTTCATCACAGAGGTTTCTTGATTCTTCTTGTTTTGTTCGCGCAGAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGgtatgcacacacctggttctcctatctgttctttgttctctcttgtagctctggataaagtcttgataatgtttggtaggaattgtgttgtttcaattctctgt
gaagcaaaatttttgggatacaagttaattctagcacatacctatctgaatccagttgtagctttgtagggtgcgggtgatcatgaatcttttttaagcacatacccatctgaatctcagtttttgtattgaatctcatagagattgtatactgggtgctttgactatagatattaagcgaaacccatctaaagccctct
gtatattgaatcttgaatatattgtgtttgtgtattattacctgttttgaattcgcagagccattgaaaccagagtttgtatgaatttatcagaaacccatatatgagttctgtattgaagaatctggtgcattgaatatagatttcagggcagatccatctaaatccctagttttgtgtggaatctagaatatattgta
tatcaggttttctacatatagatattacgttttctaaatatagatgttagcacagacccatccaaacttgaccctgatatacagacccatctaaacctgtctctgatatgcactgcaacatgaagaatgaaaacacatatcttgatctcacacaaatgaaacttgggatgcatagcctttaaaatctcaagagtgcctat
cagacctaggtttagatggctctgtgctagtttatgtgctgggaatattgtcagatggaatttcattttgtgaacagaaatactagcccacagatctaaggctgtgaaagtcagtaattgggttgatgctgttgttttattcagGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAA
GAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTG
CCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTT
TATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGT
CTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGG
TGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACATATAAAA
Intron 6 GTGGGTCATG ... GTTCGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.05 | 256.9 | 117 | 228.2 |
| A2 | 37.09 | 276.1 | 110 | 217.1 |
| A3 | 35.71 | 315.7 | 129 | 223 |
| A4 | 37.06 | 213.3 | 100 | 152.1 |
| A5 | 39.62 | 130.8 | 56 | 116.9 |
| A6 | 41.77 | 986.1 | 434 | 991.7 |
| A7 | 37.14 | 1309.2 | 528 | 1033.3 |
| A8 | 36.06 | 870.3 | 327 | 664.6 |
| A9 | 34.6 | 1274 | 439 | 919.8 |
| A10 | 35.61 | 1227.1 | 500 | 866.6 |
>TRINITY_DN114584_c0_g1_i1 from sample A1 / Example spliced isoformGTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGTCAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATT
TTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCGACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAG
CAGACATTCATTGTCATTGGGATAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAAGAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGG
CTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTGCCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGAT
GGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTTTATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATC
ATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGTCTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAG
CTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGGTGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGA
TGGTTACATATAAAA
>TRINITY_DN114584_c0_g1_i3 from sample A1 / Example unspliced isoform:GTTTTTTCTGGCTTCCACCCAAAAAGTTTGGTCACTCCATCAAAGTCAATTAAATAGTTTTTAAAGATTGAAAGTCTGGATAGATTTGACAATCACTTTCCTAGGACTGTAGGAAAAGATAGACATGAATATTGGATAACACAACACACCATTTTTTCAAAAATGAAAATTGTTGTTAAGGTGTCACAGTGCAGGCTATT
TTGAAGAGAACAAAAGTGATACAGAATTATTCTTTGCCTTTTTCTTTTAAGCGACGTTAGTAGGGGTCCACAATGGTGGAGATTGATGCACGCATTCAAATTCCGTTCATGCATCAGAGTTTTCATAGGTCTCTAATCTCTATGCATGTGATGCTGATTTGCTTTGCATTGCAGACGTGGGATCCAAAAGAAAGAGGGAG
CAGACATTCATTGTCATTGGGATgtgggtcatgccatggcgcgctccataacctttttcaatacatttattctttatttaattctccttgtatttgcctttaaatggagatgaattcagcatcagggaggcacagatatgtttagcatttaagtggttttcttttgttgggaaagaaagattataggtgttgttcttcaa
ttccagtgttcttcatcacagaggtttcttgattcttcttgttttgttcgcgcagAAGCAGCAGCAGCAGCCGCCATGGCGATGGCATACCGAATGGTATGCACACACCTGGTTCTCCTATCTGTTCTTTGTTCTCTCTTGTAGCTCTGGATAAAGTCTTGATAATGTTTGGTAGGAATTGTGTTGTTTCAATTCTCTGT
GAAGCAAAATTTTTGGGATACAAGTTAATTCTAGCACATACCTATCTGAATCCAGTTGTAGCTTTGTAGGGTGCGGGTGATCATGAATCTTTTTTAAGCACATACCCATCTGAATCTCAGTTTTTGTATTGAATCTCATAGAGATTGTATACTGGGTGCTTTGACTATAGATATTAAGCGAAACCCATCTAAAGCCCTCT
GTATATTGAATCTTGAATATATTGTGTTTGTGTATTATTACCTGTTTTGAATTCGCAGAGCCATTGAAACCAGAGTTTGTATGAATTTATCAGAAACCCATATATGAGTTCTGTATTGAAGAATCTGGTGCATTGAATATAGATTTCAGGGCAGATCCATCTAAATCCCTAGTTTTGTGTGGAATCTAGAATATATTGTA
TATCAGGTTTTCTACATATAGATATTACGTTTTCTAAATATAGATGTTAGCACAGACCCATCCAAACTTGACCCTGATATACAGACCCATCTAAACCTGTCTCTGATATGCACTGCAACATGAAGAATGAAAACACATATCTTGATCTCACACAAATGAAACTTGGGATGCATAGCCTTTAAAATCTCAAGAGTGCCTAT
CAGACCTAGGTTTAGATGGCTCTGTGCTAGTTTATGTGCTGGGAATATTGTCAGATGGAATTTCATTTTGTGAACAGAAATACTAGCCCACAGATCTAAGGCTGTGAAAGTCAGTAATTGGGTTGATGCTGTTGTTTTATTCAGGCAACAACAGGCATGGGGGTATCCGATGAATGCCTGAGTCTGTTTCAGGAGCTGAA
GAGGAAGAAGGCGCATCGATACATTGTGTTCAAGATCGACGAGAAGTCCAAGAAAGTGTTGGTTGATAAAACTGGAGGGGCTGCAGAAAGTTATGATGATTTCACAGCATCCCTTCCGGATAACGATTGCAGATATGCAGTGTTTGATTTCGACTATGTTACTGTGGACAACTGCCAGAAGAGCAAGATCTTCTTCATTG
CCTGGTCTCCTGACAAATCCCGCATCAGGGCAAAGATACTGTATGCTACATCTAAGGACAGACTAAGGAGGGAGCTTGATGGCGTTCACTATGAGCTGCAGGCTACCGATCCTACTGAGATGGATATTCATGTCATCAGAGAGCGTGCCACTTAGATCATATGTTACATTAGAGGTTTACATCATTTCAGGACTTTTGTT
TATAAACTGGGGTGATGTAATTCACTCTTGACATTATCTCATCAAGGATCGCTGCTCCTGAGGAATAACTGCCATTTATCATTTATTGATCTTTGTGTGGCTTTAATTCTCTTGTTTTGCTGTAACAACAAATTACTACTGAATGGCATATGTTACTGAAAACCTTGTTGGATCCAGAGTACATTGGATTCTACCATAGT
CTGCAAAAAATAACACCCATTTGGATCACTCCGGTATTTTTATTTGCCCAAGATCAGAAGGTTAAGATTTCAGAGCAAAGCTTTGCCTTGCATAGGTGGCATGCTCTAAACACTCTTTGGATTACAATTTGATCACTTTACCAATGAATTGTGTTGTAAGATGCCAATGGAGTTCCTTCCATACGTACAACTATGTTTGG
TGATGATTTTATAAGAACTGGGAGTAGGGTTTCTACCTACATTCTGTATCTTTAAAATGTTTTTTGTTATATTATTAGGATGGTTACATATAAAA