NA ----> NA
Intron 1 GTTAAGCTTA ... AACTTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.82 | 4 | 23 | 13 |
| A2 | 76.27 | 7 | 29 | 16 |
| A3 | 77.42 | 7 | 28 | 20 |
| A4 | 80.95 | 4 | 21 | 13 |
| A5 | 66.67 | 3 | 7 | 5 |
| A6 | 78.46 | 81 | 277 | 313 |
| A7 | 71.71 | 87 | 228 | 213 |
| A8 | 77.34 | 98 | 352 | 317 |
| A9 | 72.31 | 94 | 229 | 262 |
| A10 | 76.22 | 34 | 121 | 97 |
>TRINITY_DN37237_c0_g1_i4 from sample A6 / Example spliced isoformTTTAAATAGGCTTCAATAAAGGTTGACAACCTTAGCGGCGCCGAGAATATTGATTGAGGGTTATGATCGACCATGGCCAAAAGGGAAATCAAAGATTTACAACTTGAACGTTGTTAGAATTTGATCAATGTTAAGTTGTCAAAATGTAACTTAGGGTTAAGTAATGTAATTACTTAATCACGTGGTTAACACTTGGTAGT
GGAGAGACACTGGGTTTTTGCAAGAAGATACCCGGGTTTGTGGAGAAGGGAACCCCGTCGGACGAGACATATCTAGTGAAAAATATCGAACGAGACATCCGAAGTGCATCACCCGAGAGAGTCTCCGTCGGTAGAGGCGAACAACCGAAATCCGACCCGAACAACAGTATTGTGCAAGCAAGTCTGCCTGTCCGTGTTGG
TGACTGCCGTCTTCATAGAGAGAGGACAGTGGATAGAGCAACACAGGAGACATGGGCAATGAATAGAGCAGCACTGGAGACAGGACAGTGGACAGAGCAGCAGTTGTCAAGAAGTTAGATCAACAGACATCGAAGGGTTAAGCGTCAAACAAAGGATATTCGGGGCGATTGCATTTAAGGTAGATCCAATGTTCCTGTCA
AGAATTTTAAGAAGGCCACTTTTTGCTGCAGTCAATTCTGAAGCTTCTGCAACAGCAACCTCTGTTACAACAACTCGTAGTCCACTTGAGGAGTTTTTTGAAGCAGATCGAAGTTTGGATAATGAAAAGCCTAATGTCTATGGGCGAGGCTGGAAGGCCTCTGAGCTCCGCCTCAAGTCATGGGATGACCTTCATAAACT
ATGGTATGTTCTCTTGAAGGAGAAAAATATGCTATTGTCTCAGCGGCAAATGATGATTGCTCAGAACCTGAGGTTCCCAAATCCAGAAAGGCTTCCTAAGGTAAGGAAGTCAATGTGCCGTCTCAAACATGTGCTTACTGAGAGAGCACTGCAGGATCCGGATCCAAGAAGACGGGCCGAAATGAAGCACATGATTAATG
CCTTATGAGACTAATACAAAAAGACTGCATTTTGCATGTGGAAACAACTACCCTCAAGTGGATCTATGCTAAGAAAAACTTTTTGTATAACTATAAACATGATACCAAATTGACTTTGTTTTCTATTATTACTCTAAATTTTGACAGATTTGAACAAAGGCGATTAAGAAAAAATGGTGCAGGAAATCAGGTCATTAAGG
ATTGTCAACAAGCTGTGCAAGTTCAACAAGTTATAAAATATTAGCATACTTCATGCAAATATGAAATTGGGGTTGAATATTCTCTTTCAATATGTAAAAGTCACTGTAAACAAAATACTTTGCATGTGTTAGGAGGCAATGTGGGCATAACATGTACGAATGACATACATTTAAACTAGATGCATACTTTGTCTGAAGTG
AAGTGAAGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTACTTTGCATGTGTTAGAGAGGCAATGTGGG
>TRINITY_DN37237_c0_g1_i5 from sample A6 / Example unspliced isoform:AAGGGTTAAGCGTCAAACAAAGGCCTGGAAGAAAGCTATGGTTGTCTGTCCCATAGCATTTGAATAAATTTGCCTAGAGATCGAGACTGCATAGACTGTGAGACTGCCTAATGGGGACTGCATGTTGAAGACTGGGTAGATAACGATGGATATGGCTATGAGATATTCGGGGCGATTGCATTTAAGGTAGATCCAATGTT
CCTGTCAAGAATTTTAAGAAGGCCACTTTTTGCTGCAGTCAATTCTGAAGCTTCTGCAACAGCAACCTCTGTTACAACAACTCGTAGTCCACTTGAGGAGTTTTTTGAAGCAGATCGAAGTTTGGATAATGAAAAGCCTAATGTCTATGGGCGAGGCTGGAAGGCCTCTGAGCTCCGCCTCAAGTCATGGGATGACCTTC
ATAAACTATGGTATGTTCTCTTGAAGGAGAAAAATATGCTATTGTCTCAGCGGCAAATGATGATTGCTCAGAACCTGAGGTTCCCAAATCCAGAAAGGCTTCCTAAGGTAAGGAAGTCAATGTGCCGTCTCAAACATGTGCTTACTGAGAGAGCACTGCAGGATCCGGATCCAAGAAGACGGGCCGAAATGAAGCACATG
ATTAATGCCTTATGAGACTAATACAAAAAgttaagcttaatgtagagaacatttagagttcacgtatacataacctattattgtgcatattgttattcaattatattatggttactatgtggatagaattgttttgtcctaacaggctttcgctatgaactttctagGACTGCATTTTGCATGTGGAAACAACTACCCTC
AAGTGGATCTATGCTAAGAAAAACTTTTTGTATAACTATAAACATGATACCAAATTGACTTTGTTTTCTATTATTACTCTAAATTTTGACAGATTTGAACAAAGGCGATTAAGAAAAAATGGTGCAGGAAATCAGGTCATTAAGGATTGTCAACAAGCTGTGCAAGTTCAACAAGTTATAAAATATTAGCATACTTCATG
CAAATATGAAATTGGGGTTGAATATTCTCTTTCAATATGTAAAAGTCACTGTAAACAAAATACTTTGCATGTGTTAGGAGGCAATGTGGGCATAACATGTACGAATGACATACATTTAAACTAGATGCATACTTTGTCTGAAGTGAAGTGAAGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTACTTTGCATG
TGTTAGAGAGGCAATGTGGG