NA ----> NA

Intron 1 GTAAGTTCAA ... ATCGCTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0	6	0.6	0
A2	7.62	11	0.6	1
A3	28.2	12	0.6	5
A4	48	4	1	4.8
A5	-1	0	0	0
A6	12.68	62	7.4	9.2
A7	21.38	57	15.4	16.2
A8	16.97	70	19.6	14.6
A9	14.12	56	5.2	9.6
A10	13.88	54	10.8	8.8

>TRINITY_DN65011_c0_g1_i1 from sample A4 / Example spliced isoform

TTTGAGAATGGCCCTTCCATAAGTGTTTTGGTTTTGACGGTCAGTTTGGGCCTTCCAGAGGTTTACTGTTATGGAGACCTCAAGATTCCATCAGAAGATGTTTTAAGCGGCCGCAGGCCCACGGGAGTGAAAGAAACCTCTGCCGCCGGCCGTATGGACAACCTCTCCGCGGCGCTCAGTCCTCTCTATGCCAAACTGGA
AGACGAATTGCGGCAGGACGAGGAGTCTCCTCTTCATAATGTGCTTCGCGAGTACCAGACTTTCCTCAAACGGAGGATTAGAGGCTTAGCCTTAACTCGGGAGGAGGATCCTTCTCAAAGTGAGACTCCTGAGTAACAGAATTTTCTCTAGCGGAGGCTTAGCCTTAACGGGAGAGGAGGCTCCTTCTCTAACTGAGACT
CCTGAGTAACAGACTTTCTTCTAGCGGAGGCTTAGCCGTAACGGGAGAGGAAGTTCCTCTTCTAACTGATCCTCGTGAATAGCAGACTTTCCTCTAGCAGAGGCTTAGCATTAACTCCAGAGGAGTTTCCTCTTTTAACTGACCCTCGTGACTAGCAGACTTTCCTCTAGCAGACGCTTAGCCTTAACTCCAGTAAGTTC
AACTGGATTTTAATTTCATTTGAATGTCTTTACAAGCAAGTTCAGATAACCGCATGCTAGACCA

>TRINITY_DN65011_c0_g1_i2 from sample A4 / Example unspliced isoform:

GGAATCTTTTATCTCATTTATGGAATCGCTGCAGGAGGAAGTTCCTCTTCTAACTGATCCTCGTGAATAGCAGACTTTCCTCTAGCAGAGGCTTAGCATTAACTCCAgtaagttcaactggattttaatttcatttgaattttaagttcagtggattttaatttcatttgagtagctttacaggcgtattctgatatcgt
caggctagactaatttttagcagaagcttcttgtaatttaaccggcatatttgttttcatggaatcttttatctaatttatggaatcgctgcagGAGGAGTTTCCTCTTTTAACTGACCCTCGTGACTAGCAGACTTTCCTCTAGCAGACGCTTAGCCTTAACTCCAGTAAGTTCAACTGGATTTTAATTTCATTTGAAT
GTCTTTACAAGCAAGTTCAGATAACCGCATGCTAGACCA

Intron 2 GTAATTTTTA ... ATCGCTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0	6	0	0
A2	8.33	11	1	1
A3	7.69	12	1	1
A4	20	4	2	0
A5	-1	0	0	0
A6	2.36	62	1	2
A7	0.87	57	0	1
A8	4.11	70	1	5
A9	0	56	0	0
A10	1.82	54	1	1

>TRINITY_DN40737_c0_g1_i1 from sample A10 / Example spliced isoform

CACGTCATAGAAATTCCAATTAGTTTATGCAGATTCAGCGCTCCGATAATGCCAGCAGGCCGACTGGACTCTGCCAATTAAAAGCCTCTGGAGTCGGCACGCTTAATCTCGACCTTTGTCTGAACAGAGCAGGGGACGACGATGGACCGCCGATTCTCAATTTCCATTCTCCCATGCAACGATATTAGAGGGAACTCCAT
AGCTGTAATTGCAGAGGAGGAGAGCTCCGTAGTCTCAGGGCGAATGAGCCGGAGCGTTTGAGAATGGCCCTTCCATAAGTGTTTTGGTTTTGACGGTCAGTTTGGGCCTTCCAGAGGTTTACTGTTATGGAGACCTCAAGATTCCATCAGAAGATGTTTTAAGCGGCCGCAGGCCCACGGGAGTGAAAGAAACCTCTGCC
GCCGGCCGTATGGACAACCTCTCCGCGGCGCTCAGTCCTCTCTATGCCAAACTGGAAGACGAATTGCGGCAGGAAGAGGAGTCTCCTCTTCATAATGTGCTTCGCGAGTACCAGACTTTCCTCAAACGGAGGATTAGAGGCTTAGCCTTAACTCGGGAGGAGGATCCTTCTCAAAGTGAGACTCCTGAGTAACAGAATTT
TCTCTAGCGGAGGCTTAGCCTTAACGGGAGAGGAGGCTCCGTCTCTAACTGAGACTCCTGAGTAACAGACTTTCCTCTAGAGGAGGCTTAGCCTTAACGGGAGAGGAGGCTCCTTCTCTAACTGAGACTCCTGAGTAACAGACTTTCTTCTAGCGGAGGCTTAGCCGTAACGGGAGAGGAAGTTCCTCTTCTAACTGATC
CTCGTGAATAGCAGACTTTCCTCTAGCAGAGGCTTAGCATTAACTCCAGAGGAGTTTCCTCTTTTAACTGACCCTCGTGACTAGCAGACTTTCCTCTAGCAGACGCTTAGCCTTAACTCCAGTAAGTTCAACTGGATTTTAATTTCATTTGAATGTCTTTACAAGCAAGTTCAGATAACCGCATGCTAGACCATTTTTTA
GGCCAAAAGCTTGCTGTAATTTAAAACAGAATGTTCGATTTGTTTATGGTGGAGTCTTATTTCTATCTCATCAATAAATTAAGCTTAATTTGAGTGACATATGCATAAGATTCATATCTTTGTAAAGATTTAAGTCGTGATGGCTCGACTCCGACTGAGTAGCAGAAATAAAATATAATACAATTTTGTGTCTGTTTTAT
TCAATAAATTAGGCTGAACGCCAGGTTTATA

>TRINITY_DN40737_c0_g1_i2 from sample A10 / Example unspliced isoform:

GCGGATTTTAATTTCATTTTAGTATCTTTACAGGCAAATTCTGATATCGTCAGGCTAGACTAATTTTTAGTATAAGTTTCTTGTAATTTAACCGGCATGTTTGTTTTCATGGAATCTTTTATCTAATTTATGGAATCGCTGCAGGAGGAAGTTCCTCTTCTAACTGATCCTCGTGAATAGCAGACTTTCCTCTAGCAGAG
GCTTAGCATTAACTCCAgtaatttttagcaaaagcttcttgtaatttaaccggcatatttgttttcatggaatcttttatctaatttatggaatcgctgcagGAGGAGTTTCCTCTTTTAACTGACCCTCGTGACTAGCAGACTTTCCTCTAGCAGACGCTTAGCCTTAACTCCAGTAAGTTCAACTGG