sp|Q9LY87|RGLG2_ARATH ----> E3 ubiquitin-protein ligase RGLG2
Intron 1 GTTGGGAACT ... CTTAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.71 | 85 | 18 | 9 |
| A2 | 12.79 | 75 | 17 | 5 |
| A3 | 9.6 | 80 | 14 | 3 |
| A4 | 16.55 | 58 | 9 | 14 |
| A5 | 17.07 | 51 | 9 | 12 |
| A6 | 15.18 | 95 | 21 | 13 |
| A7 | 14.8 | 236 | 65 | 17 |
| A8 | 13.68 | 142 | 24 | 21 |
| A9 | 16.58 | 166 | 56 | 10 |
| A10 | 9.01 | 197 | 32 | 7 |
>TRINITY_DN44758_c0_g3_i13 from sample A8 / Example spliced isoformCAGCACACCCCTTCCTATTCTATCCGTGTACACTCTAATCAACTAAAATGACCGTCATAAACAGTTTCCATTTTAGCCAGACGGTCGCTGGCTTTGAAAGCATGGGAATCGGTGGGTGCTTTTGTTCACTACGAGTAACTTCGATAAATTTGGCAGAGAGGATTACGTTCTGGAATAGCAGCACCTTTTATATGCAACTG
CCACTAATAATTCCCAGCCTGGCAAAGTTTCTCAAGTTAACAGATCTCTACAATTTTTCCGAGTCACGCTGGGCGATCTCTTCGTCATAAATCTGCCTCTGTAACTGCTGCATTGAGAGAGTCTGGACTTGAGTCTTCTAACTTGATTGTTGGTATTGACTTCACTAAGAGCAATGAATGGACTGGGAGACACTCTTTTA
ATGGGCGAAGTCTACATGAAATTGGGAGTATTATGAATCCATATGAACAAGCTATTTCTTTCATAGGGCGTACTTTGTCTCCTTTTGATGAGGACAATCTAATCCCATGTTTTGGCTTCGGTGATGCATCTACACATGATGTCGATGTCTTCAGCTTATATGAAAACAATCGACCCTGCCATGGGTTTGAACAAGTACTT
GAGCGCTACAAGGAGATTGTTCCACATCTAACATTGGCTGGTCCAACATCTTTTGCTCCAATCGTTGAGGCTTCAATGGGCATTGTGGAAGCAAGTGGTGGCCAATATCATGTTCTTATTGTTATTGCAGATGGTCAGGTAACCAAGAGTAGTGATACAAGGCCTGGGCAGTTAAGCCCACAGGAACAGAAAACAATCAA
TGCTATAACTGCTGCAAGCCAGTATCCTCTTTCAATAGTACTGGTTGGAGTTGGTGATGGACCTTGGGATGTGATGCAGGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATTATGTCAAAAAGCCTTCCACAATCTGCGAAAGAGGCAGCATTTGCAATTACTGCAC
TTATGGAGATCCCATTTCAGTATAGAGCAACAATCGAACTCAATATATTGGGACGGCATGTAGGAAGCGCACC
>TRINITY_DN44758_c0_g3_i8 from sample A8 / Example unspliced isoform:CAGCACACCCCTTCCTATTCTATCCGTGTACACTCTAATCAACTAAAATGACCGTCATAAACAGTTTCCATTTTAGCCAGACGGTCGCTGGCTTTGAAAGCATGGGAATCGGTGGGTGCTTTTGTTCACTACGAGTAACTTCGATAAATTTGGCAGAGAGGATTACGTTCTGGAATAGCAGCACCTTTTATATGCAACTG
CCACTAATAATTCCCAGCCTGGCAAAGTTTCTCAAGTTAACAGATCTCTACAATTTTTCCGAGTCACGCTGGGCGATCTCTTCGTCATAAATCTGCCTCTGCAATGGGTAATAAGTTGACAAGGAGGCTTTCCCACCAACCATCACACACCCAAACATCACAATTGACACCCGGGCAGCCGGTTCCTACAAGGTCACGCA
CCCAAAGACATCAGTCTCAACCCCAATTGACATCTGGGCAGCCGGTTCCTGGAAGGTCACCAACACAGAAATATGCGCTTATTACAGATCAGTATGAAACCCTTGATCAGGTAACTGCTGCATTGAGAGAGTCTGGACTTGAGTCTTCTAACTTGATTGTTGGTATTGACTTCACTAAGAGCAATGAATGGACTGGGAGA
CACTCTTTTAATGAGCGAAGTCTACATGAAATTGGGAGTATTATGAATCCATATGAACAAGCTATTTCTTTCATAGGGCGTACTTTGTCTCCTTTTGATGAGGACAATCTAATCCCATGTTTTGGCTTCGGTGATGgttgggaactataaagctgttatccattttaattgcacgtattctgttttggtacatcacaata
ctacttaatattgtctatctttagaggcaattgtattaatatctagtaatgcttagtgcagCATCTACACATGATGTCGATGTCTTCAGCTTATATGAAAACAATCGACCCTGCCATGGGTTTGAACAAGTACTTGAGCGCTACAAGGAGATTGTTCCACATCTAACATTGGCTGGTCCAACATCTTTTGCTCCAATCGT
TGAGGCTTCAATGGGCATTGTGGAAGCAAGTGGTGGCCAATATCATGTTCTTATTGTTATTGCAGATGGTCAGGTAACCAAGAGTAGTGATACAAGGCCTGGGCAGTTAAGCCCACAGGAACAGAAAACAATCAATGCTATAACTGCTGCAAGCCAGTATCCTCTTTCAATAGTACTGGTTGGAGTTGGTGATGGACCTT
GGGATGTGATGCAGGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATTATGTCAAAAAGCCTTCCACAATCTGCGAAAGAGGCAGCATTTGCAATTACTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACAATCGAACTCAATATATTGGGACGGCATGTAGGA
AGCGCACC
Intron 2 GTACTTGTAT ... TTATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.02 | 32 | 14 | 4 |
| A2 | 29.9 | 25 | 16 | 5.5 |
| A3 | 17.03 | 38 | 7.5 | 8 |
| A4 | 36.91 | 16.7 | 7 | 12.5 |
| A5 | 29.16 | 15 | 9 | 3 |
| A6 | 15.02 | 79.3 | 16 | 12 |
| A7 | 27.24 | 99.3 | 44 | 30 |
| A8 | 22.33 | 116 | 39 | 27.5 |
| A9 | 19.51 | 81.3 | 23 | 16 |
| A10 | 21.35 | 72.3 | 16.5 | 22.5 |
>TRINITY_DN121742_c0_g1_i10 from sample A2 / Example spliced isoformGTTTCAATAGATTTTTAATTTAAAAAAATATTAATGACAAAGCAACACGGCAGTAGGTGAAGGCTTCCCTTGCATGGCCGTGTCTCTAGCAATAATTGCGCAACGATAAATACAAATCTCCGGATATTCTTGCGGTGACGAGGGTTTCAATGGGATCTACTGTACAGATTTATAAGTTTCAGTTATGCTAGCAGCTATAA
GGTTTGCTTCCTAAATCTTGATTAAGTTGGTGCCATCTGAAAGCTTTTGACAATGGGTAATAAGGAGTCAAAGGGTTCTGATTATGGGCCTGAATACAGTCAACCATCAGCATCAAGAGCGGAGGCTCCTACTAATAAGCGCATGAAGAAATTTTTGAACATAACAGATCAGTACAAAACACTTGATGAGGTAATAGCTG
CCTTGAGAGAATTTGGGCTTGAATCATCCAATTTGATCCTGGGAATTGACTTCACCAAGAGCAATGAGTGGAGTGGGAAATACTCTTTTAATAGGCGGAGTTTACATGAAATTGGCAACATACCGAACCCATATGAGCAAGCAATTTCTGTCATTGGACGAACTCTGTCTCCATTTGATGAAGATAATATGATACCCTGC
TTCGGCTTTGGTGATGCATCTACACATGATCATTATGTGTTCAGCTTCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTTACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCA
TGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGATGCAAGAATTTGATGATAAACTCCCTCACCGTGAAT
TTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATT
CAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAA
TTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGA
TATATGTGTACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCT
>TRINITY_DN121742_c0_g1_i9 from sample A2 / Example unspliced isoform:TCCATAGAACAGTTTGTGCACTTTTATTGAATTAATGCCGCATATGAAGCCATCAAGCTCGGCGAACAGTTATGTTGGCCTCTGATATGGAGTTGCATCCCTTGTGCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCAT
TTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGgtacttgtatagaatcaacttcactaatataatgtcttttgaaggttggctctgcttcttgtttcttcctccagaagatcattttgatgttccttatttacagTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCA
ACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATT
TGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTT
Intron 3 GCAATGGGTA ... CCTTGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.66 | 42.3 | 44 | 66.7 |
| A2 | 50.95 | 38.3 | 30 | 49.7 |
| A3 | 47.41 | 50.7 | 52 | 39.3 |
| A4 | 53.52 | 34.3 | 37 | 42 |
| A5 | 60.78 | 15 | 17 | 29.3 |
| A6 | 45.87 | 42.3 | 38 | 33.7 |
| A7 | 48.73 | 94 | 78 | 100.7 |
| A8 | 47.64 | 58.7 | 42 | 64.7 |
| A9 | 58.1 | 60 | 70 | 96.3 |
| A10 | 56.48 | 64.3 | 69 | 98 |
>TRINITY_DN44758_c0_g3_i13 from sample A8 / Example spliced isoformCAGCACACCCCTTCCTATTCTATCCGTGTACACTCTAATCAACTAAAATGACCGTCATAAACAGTTTCCATTTTAGCCAGACGGTCGCTGGCTTTGAAAGCATGGGAATCGGTGGGTGCTTTTGTTCACTACGAGTAACTTCGATAAATTTGGCAGAGAGGATTACGTTCTGGAATAGCAGCACCTTTTATATGCAACTG
CCACTAATAATTCCCAGCCTGGCAAAGTTTCTCAAGTTAACAGATCTCTACAATTTTTCCGAGTCACGCTGGGCGATCTCTTCGTCATAAATCTGCCTCTGTAACTGCTGCATTGAGAGAGTCTGGACTTGAGTCTTCTAACTTGATTGTTGGTATTGACTTCACTAAGAGCAATGAATGGACTGGGAGACACTCTTTTA
ATGGGCGAAGTCTACATGAAATTGGGAGTATTATGAATCCATATGAACAAGCTATTTCTTTCATAGGGCGTACTTTGTCTCCTTTTGATGAGGACAATCTAATCCCATGTTTTGGCTTCGGTGATGCATCTACACATGATGTCGATGTCTTCAGCTTATATGAAAACAATCGACCCTGCCATGGGTTTGAACAAGTACTT
GAGCGCTACAAGGAGATTGTTCCACATCTAACATTGGCTGGTCCAACATCTTTTGCTCCAATCGTTGAGGCTTCAATGGGCATTGTGGAAGCAAGTGGTGGCCAATATCATGTTCTTATTGTTATTGCAGATGGTCAGGTAACCAAGAGTAGTGATACAAGGCCTGGGCAGTTAAGCCCACAGGAACAGAAAACAATCAA
TGCTATAACTGCTGCAAGCCAGTATCCTCTTTCAATAGTACTGGTTGGAGTTGGTGATGGACCTTGGGATGTGATGCAGGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATTATGTCAAAAAGCCTTCCACAATCTGCGAAAGAGGCAGCATTTGCAATTACTGCAC
TTATGGAGATCCCATTTCAGTATAGAGCAACAATCGAACTCAATATATTGGGACGGCATGTAGGAAGCGCACC
>TRINITY_DN44758_c0_g3_i8 from sample A8 / Example unspliced isoform:CAGCACACCCCTTCCTATTCTATCCGTGTACACTCTAATCAACTAAAATGACCGTCATAAACAGTTTCCATTTTAGCCAGACGGTCGCTGGCTTTGAAAGCATGGGAATCGGTGGGTGCTTTTGTTCACTACGAGTAACTTCGATAAATTTGGCAGAGAGGATTACGTTCTGGAATAGCAGCACCTTTTATATGCAACTG
CCACTAATAATTCCCAGCCTGGCAAAGTTTCTCAAGTTAACAGATCTCTACAATTTTTCCGAGTCACGCTGGGCGATCTCTTCGTCATAAATCTGCCTCTgcaatgggtaataagttgacaaggaggctttcccaccaaccatcacacacccaaacatcacaattgacacccgggcagccggttcctacaaggtcacgca
cccaaagacatcagtctcaaccccaattgacatctgggcagccggttcctggaaggtcaccaacacagaaatatgcgcttattacagatcagtatgaaacccttgatcagGTAACTGCTGCATTGAGAGAGTCTGGACTTGAGTCTTCTAACTTGATTGTTGGTATTGACTTCACTAAGAGCAATGAATGGACTGGGAGA
CACTCTTTTAATGAGCGAAGTCTACATGAAATTGGGAGTATTATGAATCCATATGAACAAGCTATTTCTTTCATAGGGCGTACTTTGTCTCCTTTTGATGAGGACAATCTAATCCCATGTTTTGGCTTCGGTGATGGTTGGGAACTATAAAGCTGTTATCCATTTTAATTGCACGTATTCTGTTTTGGTACATCACAATA
CTACTTAATATTGTCTATCTTTAGAGGCAATTGTATTAATATCTAGTAATGCTTAGTGCAGCATCTACACATGATGTCGATGTCTTCAGCTTATATGAAAACAATCGACCCTGCCATGGGTTTGAACAAGTACTTGAGCGCTACAAGGAGATTGTTCCACATCTAACATTGGCTGGTCCAACATCTTTTGCTCCAATCGT
TGAGGCTTCAATGGGCATTGTGGAAGCAAGTGGTGGCCAATATCATGTTCTTATTGTTATTGCAGATGGTCAGGTAACCAAGAGTAGTGATACAAGGCCTGGGCAGTTAAGCCCACAGGAACAGAAAACAATCAATGCTATAACTGCTGCAAGCCAGTATCCTCTTTCAATAGTACTGGTTGGAGTTGGTGATGGACCTT
GGGATGTGATGCAGGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATTATGTCAAAAAGCCTTCCACAATCTGCGAAAGAGGCAGCATTTGCAATTACTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACAATCGAACTCAATATATTGGGACGGCATGTAGGA
AGCGCACC
Intron 4 GTTGGTGACT ... GCAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.84 | 95 | 0 | 14 |
| A2 | 21.14 | 97 | 1 | 26 |
| A3 | 19.33 | 96 | 0 | 23 |
| A4 | 22.14 | 102 | 0 | 29 |
| A5 | 9.09 | 50 | 0 | 5 |
| A6 | 19.84 | 206 | 0 | 51 |
| A7 | 10.41 | 327 | 0 | 38 |
| A8 | 14.59 | 199 | 0 | 34 |
| A9 | 11.61 | 312 | 1 | 41 |
| A10 | 12.03 | 234 | 0 | 32 |
>TRINITY_DN121742_c0_g1_i10 from sample A2 / Example spliced isoformGTTTCAATAGATTTTTAATTTAAAAAAATATTAATGACAAAGCAACACGGCAGTAGGTGAAGGCTTCCCTTGCATGGCCGTGTCTCTAGCAATAATTGCGCAACGATAAATACAAATCTCCGGATATTCTTGCGGTGACGAGGGTTTCAATGGGATCTACTGTACAGATTTATAAGTTTCAGTTATGCTAGCAGCTATAA
GGTTTGCTTCCTAAATCTTGATTAAGTTGGTGCCATCTGAAAGCTTTTGACAATGGGTAATAAGGAGTCAAAGGGTTCTGATTATGGGCCTGAATACAGTCAACCATCAGCATCAAGAGCGGAGGCTCCTACTAATAAGCGCATGAAGAAATTTTTGAACATAACAGATCAGTACAAAACACTTGATGAGGTAATAGCTG
CCTTGAGAGAATTTGGGCTTGAATCATCCAATTTGATCCTGGGAATTGACTTCACCAAGAGCAATGAGTGGAGTGGGAAATACTCTTTTAATAGGCGGAGTTTACATGAAATTGGCAACATACCGAACCCATATGAGCAAGCAATTTCTGTCATTGGACGAACTCTGTCTCCATTTGATGAAGATAATATGATACCCTGC
TTCGGCTTTGGTGATGCATCTACACATGATCATTATGTGTTCAGCTTCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTTACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCA
TGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGATGCAAGAATTTGATGATAAACTCCCTCACCGTGAAT
TTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATT
CAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAA
TTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGA
TATATGTGTACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCT
>TRINITY_DN121742_c0_g1_i6 from sample A2 / Example unspliced isoform:ACCCTGCTTCGGCTTTGGTGATGgttggtgactagaaaaaattatgtttatgatctataccagctctggaaagggcatcatacattgatgtaaactatataattaattagatataggccttcccagttgtctttcttcatttgttttactgcttgagttttaataatccctgatttttttacttttgcaattgcagCATC
TACACATGATCATTATGTGTTCAGCTTCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTTACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAG
ATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGATGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTG
AACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTC
AAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTAT
GTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTCCAACGAGTTTTGCTCCAGTAATTGAGGCTTCAATGGGCATTGTG
Intron 5 GTGCTGTTTT ... ATTCCACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.32 | 17.5 | 8 | 5 |
| A2 | 25.02 | 30 | 12 | 10 |
| A3 | 9.9 | 18.5 | 8 | 2 |
| A4 | 20 | 4 | 3.5 | 1 |
| A5 | 0 | 10.5 | 5.5 | 0 |
| A6 | 10.53 | 25.5 | 8 | 3 |
| A7 | 17.5 | 48 | 16.5 | 10 |
| A8 | 12.19 | 58 | 19.5 | 8 |
| A9 | 7.6 | 85.5 | 32 | 7 |
| A10 | 8.08 | 45.5 | 17 | 4 |
>TRINITY_DN121742_c0_g1_i3 from sample A2 / Example spliced isoformGTTTCAATAGATTTTTAATTTAAAAAAATATTAATGACAAAGCAACACGGCAGTAGGTGAAGGCTTCCCTTGCATGGCCGTGTCTCTAGCAATAATTGCGCAACGATAAATACAAATCTCCGGATATTCTTGCGGTGACGAGGGTTTCAATGGGATCTACTGTACAGATTTATAAGTTTCAGTTATGCTAGCAGCTATAA
GGTTTGCTTCCTAAATCTTGATTAAGTTGGTGCCATCTGAAAGCTTTTGACAATGGGTAATAAGGAGTCAAAGGGTTCTGATTATGGGCCTGAATACAGTCAACCATCAGCATCAAGAGCGGAGGCTCCTACTAATAAGCGCATGAAGAAATTTTTGAACATAACAGATCAGTACAAAACACTTGATGAGGTAATAGCTG
CCTTGAGAGAATTTGGGCTTGAATCATCCAATTTGATCCTGGGAATTGACTTCACCAAGAGCAATGAGTGGAGTGGGAAATACTCTTTTAATAGGCGGAGTTTACATGAAATTGGCAACATACCGAACCCATATGAGCAAGCAATTTCTGTCATTGGACGAACTCTGTCTCCATTTGATGAAGATAATATGATACCCTGC
TTCGGCTTTGGTGATGCATCTACACATGATCATTATGTGTTCAGCTTCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTTACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCA
TGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGATGCAAGAATTTGATGATAAACTCCCTCACCGTGAAT
TTGACAATTTTCAGTTCTATTCTTCTGGAGTGACAGTGTGTGTGTGTGCGCCAGTGCACATGTGGTATAGAGAGAGGCAGAAGAGGTAGTGACTGGGATTTCAAACCTGCATGCTGAATCTAGTGGTTTGGGGAAGACGCCAGTTTAGGTTTCTTTCCTGATGGCCATAATAAGCATAGCAAGTTAATCTAGCATCTTTT
TCCTGTTTGTAAAAGTCTTATGATCTTCACTCTCCTGGCGAACAAGTTTGATGCATCAGTTTCCTTAGTTTGTTATGCATGGATTGTAGCTTTTGCCTGAAGTACTACTTATGCCCA
>TRINITY_DN121742_c0_g1_i7 from sample A2 / Example unspliced isoform:GTTTCAATAGATTTTTAATTTAAAAAAATATTAATGACAAAGCAACACGGCAGTAGGTGAAGGCTTCCCTTGCATGGCCGTGTCTCTAGCAATAATTGCGCAACGATAAATACAAATCTCCGGATATTCTTGCGGTGACGAGGGTTTCAATGGGATCTACTGTACAGATTTATAAGTTTCAGTTATGCTAGCAGCTATAA
GGTTTGCTTCCTAAATCTTGATTAAGTTGGTGCCATCTGAAAGCTTTTGACAATGGGTAATAAGGAGTCAAAGGGTTCTGATTATGGGCCTGAATACAGTCAACCATCAGCATCAAGAGCGGAGGCTCCTACTAATAAGCGCATGAAGAAATTTTTGAACATAACAGATCAGTACAAAACACTTGATGAGGTAATAGCTG
CCTTGAGAGAATTTGGGCTTGAATCATCCAATTTGATCCTGGGAATTGACTTCACCAAGAGCAATGAGTGGAGTGGGAAATACTCTTTTAATAGGCGGAGTTTACATGAAATTGGCAACATACCGAACCCATATGAGCAAGCAATTTCTGTCATTGGACGAACTCTGTCTCCATTTGATGAAGATAATATGATACCCTGC
TTCGGCTTTGGTGATGCATCTACACATGATCATTATGTGTTCAGCTTCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTTACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCA
TGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGATGCAAGAATTTGATGATAAACTCCCTCACCGTGAAT
TTGACAATTTTCAGgtgctgttttgttgcatttaaactcaaatttcttgtttttctttatttacttctgtctatattggtgtggatgcaaatataactgtatgctagttgtgatttaagtggcaaagattaatagctgctacccatgattccaccagTTCTATTCTTCTGGAGTGACAGTGTGTGTGTGTGCGCCAGTGC
ACATGTGGTATAGAGAGAGGCAGAAGAGGTAGTGACTGGGATTTCAAACCTGCATGCTGAATCTAGTGGTTTGGGGAAGACGCCAGTTTAGGTTTCTTTCCTGATGGCCATAATAAGCATAGCAAGTTAATCTAGCATCTTTTTCCTGTTTGTAAAAGTCTTATGATCTTCACTCTCCTGGCGAACAAGTTTGATGCATC
AGTTTCCTTAGTTTGTTATGCATGGATTGTAGCTTTTGCCTGAAGTACTACTTATGCCCA
Intron 6 GTTTGCTTCC ... CTGAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.98 | 32.5 | 104.5 | 101 |
| A2 | 72.29 | 43.5 | 123 | 104 |
| A3 | 71.48 | 36.5 | 102 | 81 |
| A4 | 77.69 | 36.5 | 157 | 97 |
| A5 | 77.6 | 14 | 61 | 36 |
| A6 | 70.5 | 86.5 | 214.5 | 199 |
| A7 | 72.13 | 113 | 313 | 272 |
| A8 | 70.77 | 57 | 141 | 135 |
| A9 | 71.56 | 121 | 340 | 269 |
| A10 | 79.21 | 71 | 305 | 236 |
>TRINITY_DN102331_c0_g1_i6 from sample A4 / Example spliced isoformCCGGCAGTAGGTGAAGGCTTCCCTTGCATGGCCGTGTCTCTAGCAATAATTGCGCAACGATAAATACAGATCTCCGGATATTCTTGCGGTGACGAGGGTTTCAATGGGATATACTGTACAGATTTATAAGTTTCAGTTATGCTAGCAGCTATAAGTCAACCATCAGCATCAAGAGCGGAGGCTCCTACTAATAAGCGCAT
GAAGAAATTTTTGAACATAACAGATCAGTACAAAACACTTGATGAGGTAATAGCTGCCTTGAGAGAATTTGGGCTTGAATCATCCAATTTGATGATACCCTGCTTCGGCTTTGGTGATGCATCTACACATGATCATTATGTGTTCAGCTTCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTT
ACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGTGGACAATATCATGTTCTTGTAATCATTGCTGATGGACAGGTGACGAGGAGTAGTGATACAGAGGTTGGACGTTTAAGTCAACAAGAACAGAAAACAGTAGATGCTATA
GTTGCTGCAAGTCAGTTTCCTTTATCTGTTGTATTAGTCGGAGTTGGAGATGGACCATGGGATGCAATGCAGGAATTTGATGATAATATCCCCCATCGAGCATTCGATAATTTTCAGTTCGTGAACTTTACAAATATCATGGCCAAAAATATGGCTGTTTCTGAGAAAGAAGCAGCGTTTGCACTAGCAGCACTCATGGA
GATTCCATTTCAATACAAAGCCACGCAAGAGCTTCAGCTGTTGGGTCACTGTGCAGGAAAGGCTCCGGAAGTGCTTCCATTGCCTCCTCCAATGCCAGTTATTCAAGGTGACACCACCGCACCAGCATACCCTCATTCTACAGGTTTCCCGTATCAACCTTCTCAAGGCACTACAGATGCACCATCTTTCCAACAAGAAA
GGAGTGTTGAAAATCAGGAGCAGTTTTGTCCAGTTTGCTTAACAAATCCCAGAGACATGGCTTTTGGTTGTGGACATACAATTTGTAAGGATTGTAGCCCAAATTTATCCCACTGTCCCTTGTGTCGTAAAGCTATAAGCACACGCCTGAGGCTTTATTGATATTCTGCTTGAAGAAGCATCCTGGTTCACTTTGGCATG
TACAGACTGGAGGAACGTGCTGTGCTGTGCTGTGTTGCTTTTTAGGGAATTTGGTGATAAAATTGAGGCAGTATGCTGTTACTACAGTTTTCCTGATTCTAGAAATCAACTTGACTCCCACATTATTGGCGATTGCTGCTGGATGCCACCTTTGTAATATACATCTGTATTTCTTTTTAAATAAACATGTTAAGTGTGTT
CATGATGTTCTAAATGGCTAACTTCATGAAACCAAGTATATTTTTTGAGTATATTTGAGATGAGATGTATAATTTTTTTCTCCTATGTGGAGCATCTGAATACTTGTGTACATTACAAGGGAATAATACTATTTTGATTCATTCATTTTTATATGGTTATGTTACTCTCCACTAGCAGCTTTTAGATCAGTTTTGTTGGT
GGGTCCTCTCCTTCCACATCAGAAATCTGGCCAGG
>TRINITY_DN102331_c0_g1_i3 from sample A4 / Example unspliced isoform:CCGGCAGTAGGTGAAGGCTTCCCTTGCATGGCCGTGTCTCTAGCAATAATTGCGCAACGATAAATACAGATCTCCGGATATTCTTGCGGTGACGAGGGTTTCAATGGGATATACTGTACAGATTTATAAGTTTCAGTTATGCTAGCAGCTATAAGgtttgcttcctaaatcttgattaagttggtgccatctgaaagctt
ttgacaatgggtaataaggagtcaaagggttctgattatgggcctgaatacagTCAACCATCAGCATCAAGAGCGGAGGCTCCTACTAATAAGCGCATGAAGAAATTTTTGAACATAACAGATCAGTACAAAACACTTGATGAGGTAATAGCTGCCTTGAGAGAATTTGGGCTTGAATCATCCAATTTGATCCTGGGAAT
TGACTTCACCAAGAGCAATGAGTGGAGTGGGAAATACTCTTTTAATAGGCGGAGTTTACATGAAATTGGCAACATACCGAACCCATATGAGCAAGCAATTTCTGTCATTGGACGAACTCTGTCTCCATTTGATGAAGATAATATGATACCCTGCTTCGGCTTTGGTGATGCATCTACACATGATCATTATGTGTTCAGCT
TCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTTACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGTGGACAATATCATGTTCTTGTAATCATTGCTGATGGACAGGTGACGAGGAGTAGTGAT
ACAGAGGTTGGACGTTTAAGTCAACAAGAACAGAAAACAGTAGATGCTATAGTTGCTGCAAGTCAGTTTCCTTTATCTGTTGTATTAGTCGGAGTTGGAGATGGACCATGGGATGCAATGCAGGAATTTGATGATAATATCCCCCATCGAGCATTCGATAATTTTCAGTTCGTGAACTTTACAAATATCATGGCCAAAAA
TATGGCTGTTTCTGAGAAAGAAGCAGCGTTTGCACTAGCAGCACTCATGGAGATTCCATTTCAATACAAAGCCACGCAAGAGCTTCAGCTGTTGGGTCACTGTGCAGGAAAGGCTCCGGAAGTGCTTCCATTGCCTCCTCCAATGCCAGTTATTCAAGGTGACACCACCGCACCAGCATACCCTCATTCTACAGGTTTCC
CGTATCAACCTTCTCAAGGCACTACAGATGCACCATCTTTCCAACAAGAAAGGAGTGTTGAAAATCAGGAGCAGTTTTGTCCAGTTTGCTTAACAAATCCCAGAGACATGGCTTTTGGTTGTGGACATACAATTTGTAAGGATTGTAGCCCAAATTTATCCCACTGTCCCTTGTGTCGTAAAGCTATAAGCACACGCCTG
AGGCTTTATTGATATTCTGCTTGAAGAAGCATCCTGGTTCACTTTGGCATGTACAGACTGGAGGAACGTGCTGTGCTGTGCTGTGTTGCTTTTTAGGGAATTTGGTGATAAAATTGAGGCAGTATGCTGTTACTACAGTTTTCCTGATTCTAGAAATCAACTTGACTCCCACATTATTGGCGATTGCTGCTGGATGCCAC
CTTTGTAATATACATCTGTATTTCTTTTTAAATAAACATGTTAAGTGTGTTCATGATGTTCTAAATGGCTAACTTCATGAAACCAAGTATATTTTTTGAGTATATTTGAGATGAGATGTATAATTTTTTTCTCCTATGTGGAGCATCTGAATACTTGTGTACATTACAAGGGAATAATACTATTTTGATTCATTCATTTT
TATATGGTTATGTTACTCTCCACTAGCAGCTTTTAGATCAGTTTTGTTGGTGGGTCCTCTCCTTCCACATCAGAAATCTGGCCAGG
Intron 7 GTTGGCTCTG ... AATTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.1 | 2 | 7 | 20 |
| A2 | 54.39 | 13 | 9 | 22 |
| A3 | 51.85 | 13 | 4 | 24 |
| A4 | 87.88 | 2 | 9 | 20 |
| A5 | 61.29 | 6 | 6 | 13 |
| A6 | 57.02 | 26 | 10 | 59 |
| A7 | 59.73 | 30 | 33 | 56 |
| A8 | 62.04 | 26 | 27 | 58 |
| A9 | 53.03 | 31 | 15 | 55 |
| A10 | 60.32 | 25 | 18 | 58 |
>TRINITY_DN121742_c0_g1_i1 from sample A2 / Example spliced isoformGTTTCAATAGATTTTTAATTTAAAAAAATATTAATGACAAAGCAACACGGCAGTAGGTGAAGGCTTCCCTTGCATGGCCGTGTCTCTAGCAATAATTGCGCAACGATAAATACAAATCTCCGGATATTCTTGCGGTGACGAGGGTTTCAATGGGATCTACTGTACAGATTTATAAGTTTCAGTTATGCTAGCAGCTATAA
GGTTTGCTTCCTAAATCTTGATTAAGTTGGTGCCATCTGAAAGCTTTTGACAATGGGTAATAAGGAGTCAAAGGGTTCTGATTATGGGCCTGAATACAGTCAACCATCAGCATCAAGAGCGGAGGCTCCTACTAATAAGCGCATGAAGAAATTTTTGAACATAACAGATCAGTACAAAACACTTGATGAGGTAATAGCTG
CCTTGAGAGAATTTGGGCTTGAATCATCCAATTTGATCCTGGGAATTGACTTCACCAAGAGCAATGAGTGGAGTGGGAAATACTCTTTTAATAGGCGGAGTTTACATGAAATTGGCAACATACCGAACCCATATGAGCAAGCAATTTCTGTCATTGGACGAACTCTGTCTCCATTTGATGAAGATAATATGATACCCTGC
TTCGGCTTTGGTGATGCATCTACACATGATCATTATGTGTTCAGCTTCTTTCCAAACCATCGACCCTGCAATGGATTTGAAGAGGTACTTGCTCGTTACAGAGACATTGTGCCGCATTTGAGACTAGCTGGACCAACATCTTTTGCTCCAATTATTGAAGTAGCAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCA
TGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGATGCAAGAATTTGATGATAAACTCCCTCACCGTGAAT
TTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGGTACTTGTATAGAATCAACTTCACTAATATAATGTCTTTTGAAGGGTCCACAACCCAC
CAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTT
GAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTCTGGGTGAATATAAAGGTGAG
>TRINITY_DN121742_c0_g1_i9 from sample A2 / Example unspliced isoform:TCCATAGAACAGTTTGTGCACTTTTATTGAATTAATGCCGCATATGAAGCCATCAAGCTCGGCGAACAGTTATGTTGGCCTCTGATATGGAGTTGCATCCCTTGTGCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCAT
TTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGGTACTTGTATAGAATCAACTTCACTAATATAATGTCTTTTGAAGgttggctctgcttcttgtttcttcctccagaagatcattttgatgttccttatttacagtcaatgtgtgggaagggctccaaatatagtgcctcgtaatcctcctttgccaatgattca
acatgatgctgcttcctcaaattttccagGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATT
TGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTT