sp|Q9LYZ9|PP362_ARATH ----> Pentatricopeptide repeat-containing protein At5g02860
Intron 1 GTATTTATAT ... TTTTTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 8 | 16 | 8 |
| A2 | 52.17 | 11 | 12 | 3 |
| A3 | 53.33 | 14 | 16 | 5 |
| A4 | 58.33 | 5 | 7 | 4 |
| A5 | 54.55 | 5 | 6 | 3 |
| A6 | 50 | 9 | 9 | 0 |
| A7 | 54.17 | 11 | 13 | 0 |
| A8 | 50 | 2 | 2 | 0 |
| A9 | 50 | 13 | 13 | 0 |
| A10 | 55.56 | 4 | 5 | 0 |
>TRINITY_DN109442_c1_g1_i2 from sample A3 / Example spliced isoformATTAAAACATCTTCACTAAAAGATAACTCCAACAAGGAAAAATATCATTAAACCCTAGGGCTCCAAAAGATACGTCCGTTCTCTAAAACCCCGAGCGGCACCATTTTTTACCGATCGCAGCTTTTCTCCATTAATTCAAAGTGTGGTGGGTAGAATTTGATTGAAAGCGTAGTGTTTCCATTGATATAAACTATCCATCT
CGAAGGCAGCGAATATTTTCCTCTGCGTGAATCTCGGCCTGCATCCGCTGTAAGCATCCCCTGTTATCCCAGGAAGGACAAGGACAATGGAGTGCTTATCGGGTTTCTGCTTCATTCTGAAGAGCATCTGAAGTTTCATTGCATTTCGAGGGGCGTCTGTGCTTGGTTTTGGCGATCTTTGCACTCCGTAATAGCCAGTT
AAGCAGTTCTGATTTTTTCGGTGATTGGATTTGATTGAGATCGATTTGAAGAATATTATGCAGTCTTTGAAGCTTTTGGATTTTTTGGTAGGCAGTTCATTCATCCCGCATTCTTTGTATATTACATTCGCACCATTTTGATCCAGTGGAGAACCCCTCCTCTAAAATCCCTGAGCGAGACAACGATAAATCTGTTATTG
TTCCTGCCATAGATCTTTCAAGCAAAGTAAGGCTCCATATTGCGGTCATTGTATCTACCATCGTGTTAAATTAACTATACCCGGACAAACTTCATCTTTACATGGCTAAAATTTGGTATGAGGGTGG
>TRINITY_DN109442_c1_g1_i1 from sample A3 / Example unspliced isoform:ATTAAAACATCTTCACTAAAAGATAACTCCAACAAGGAAAAATATCATTAAACCCTAGGGCTCCAAAAGATACGTCCGTTCTCTAAAACCCCGAGCGGCACCATTTTTTACCGATCGCAGCTTTTCTCCATTAATTCAAAGTGTGGTGGGTAGAATTTGATTGAAAGCGTAGTGTTTCCATTGATATAAACTATCCATCT
CGAAGGCAGCGAATATTTTCCTCTGCGTGAATCTCGGCCTGCATCCGCTGTAAGCATCCCCTGTTATCCCAGGAAGGACAAGGACAATGGAGTGCTTATCGGGTTTCTGCTTCATTCTGAAGAGCATCTGAAGTTTCATTGCATTTCGAGGGGCGTCTGTGCTTGgtatttatatcatcactctttcttgcttatatctc
acttcttcactgtatgtgaaaacgacaaatttttttgccagGTTTTGGCGATCTTTGCACTCCGTAATAGCCAGTTAAGCAGTTCTGATTTTTTCGGTGATTGGATTTGATTGAGATCGATTTGAAGAATATTATGCAGTCTTTGAAGCTTTTGGATTTTTTGGTAGGCAGTTCATTCATCCCGCATTCTTTGTATATTA
CATTCGCACCATTTTGATCCAGTGGAGAACCCCTCCTCTAAAATCCCTGAGCGAGACAACGATAAATCTGTTATTGTTCCTGCCATAGATCTTTCAAGCAAAGTAAGGCTCCATATTGCGGTCATTGTATCTACCATCGTGTTAAATTAACTATACCCGGACAAACTTCATCTTTACATGGCTAAAATTTGGTATGAGGG
TGG
Intron 2 GTCAAACCAG ... TTTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.61 | 10 | 34 | 28 |
| A2 | 63.77 | 25 | 47 | 41 |
| A3 | 71.08 | 12 | 36 | 23 |
| A4 | 64.71 | 18 | 26 | 40 |
| A5 | 55.56 | 12 | 13 | 17 |
| A6 | 57.14 | 15 | 25 | 15 |
| A7 | 67.52 | 19 | 49 | 30 |
| A8 | 58.33 | 10 | 17 | 11 |
| A9 | 78.38 | 8 | 34 | 24 |
| A10 | 67.06 | 14 | 31 | 26 |
>TRINITY_DN109442_c1_g1_i4 from sample A3 / Example spliced isoformATTAAAACATCTTCACTAAAAGATAACTCCAACAAGGAAAAATATCATTAAACCCTAGGGCTCCAAAAGATACGTCCGTTCTCTAAAACCCCGAGCGGCACCATTTTTTACCGATCGCAGCTTTTCTCCATTAATTCAAAGTGTGGTGGGTAGAATTTGATTGAAAGCGTAGTGTTTCCATTGATATAAACTATCCATCT
CGAAGGCAGCGAATATTTTCCTCTGCGTGAATCTCGGCCTGCATCCGCTGTGAGCATCCCCTGTTATCTCAGTAAGGACAAGGACAATGGAGTGCTTATCGGGTTTCTGCTTCATTCTGAAGAGCATCTGAAGTTTCATTGCATTTCGAGGGGCGTCTGAGCTTGGTAGGTTTCTCATTATGCATCGCAAGCTTCAACGC
CATATCCTGCAACCTGTGTTTACAAGCAATATTTTGGGAGTTTCACAGGTATCTGCTGGAAGTTACCATGGAAAATCTCAACAACATTTGCTACAATTTCTCTATAAGAGCATTTCTGTTGGGCCACCATTACAAAATATTCCAGCAGCCATCCGATTGTGGCATGGCTGTAGCAGACAGATATCAAGGACTCGAGGTAT
TAGTGGGCTTTCTAGCAGGCCCAAGCTAGTTGATGAAATATACCAGCAACTACGGGCAGGTGGATGGAATTCATCAACAGTGAGCATATTGGAGAGGTTGGATGGTATCTATACTCCAAGAATTGTAGCCACGGTTTTGAATGAAAGGATGCCTACTGAGGTTGCAATGGGTTTTTACAATTGGATTATGAATCAAGATG
GATTCAAGCCAACAGTGGCTGTATACAATGCAGTGATAGGTATATTGGGAAAGGCTCGAGATGTAGAGAAAATGCAGTCAATCATGGAGGATATGTCTAAAAATGGATGTGATATGGATGTTGTGACCTACACTCAACTCATACATGCATACAAAATAGCTCGTGACATTGACAGTGCAATCAATGTTTACAATCAGATG
AAGGAGAACAACTGCAAACCTAATGTGGTCTTCTACACTGCACTGATTGGTGCTCTTGCCAAGGGCAAGAAATATGAGAAACTGACAGAAATGTATAGTGAAATGCTAAAAGACCAAGTTTTCCCAAATATGATAACTTTCATTACTCTCATGAAAACTCTCTATAAAGCTGGAAATCTTGACGCTGCTTTTGAAATATT
GAAATTGATGCAAAAAATGAAGATTCACCCCAGTCCTTCTATGTATGCTTTGTTTATGGAGGCATATGCAAAGGCAGGTGACATTGAAATGGTAAAGGATCTCGTTAATGAGATGAAAGAATATGGCTTTTCAGCTGGTCCTATTTATTCCAATGTAATATACCGCTTAGTCAAAGAAGGGAAGGAGAAGGAAGCCATAG
TAATTGCACAGTTACTTTGGCCTGATGAGAAGAGTAGGGCTAAATTTCTGAATTTTGAACCATTCTTGAAGGCTCTTCCAAGAATCAAACATGAGAATCTGGATAATAAGCATGGCAAATTCAGCATTTCTGAAATCACAAAAAGCCTTCAGATTTGGACGCCAGTTACTATTGCAGCTTTAGAGGCTGCATCTGTGGAT
TGGAAGAGTCATCAAGTAGTGTTGGTGATCAAGCGAGTGAGGAATGCACGCATTGCATCTGAATTTTATTATTGGTTGAAGAATTCAGGTTTCAAGCATGATAAACACACTGCTTCTGCCCTTGTCTTGAGGTCGATGAAGTCAAAGAAATTCTCAACCACAATGAAGCTGTTGTATGAACTGAAGGAGGAAGGTATTAA
GCTACCATTACTAATATACAATGAGCTCATCAGGTTTGCTTCGACAGAAAAAAATTTCAGAACAGCTCACGCGGCTTTAGGTGTTATTAGAGACACTGGTTTGAAACCAAATCTAATGACATACTCAAATTTGATTATGGGACTTGCTAATTGTCACCTATATGATTCGGCTTTGAAACTATTTCGAATCATGCTGCGTG
ATGGAATTTGTCCTGACAACACAACTATCACCACTTTACTCTACCGCATTGGTTCTTCAGATGATCCTGAAAAAGCTGGATCTCTTTTTAAAGAACTTCTAGAGTATGGCTTGAAATTCAATGCCAATGTTTACATAGCACTCCTATATGCATATCACAAGCATGGGAAATCTGAAATGGCTGTGAAGGTTTACAATGAC
ATGAAAACAGCTGGTTTGGAGCCAGTGTCAGTAGATGGAGATATTGCTGTGGTGTTATCCTCTTTTGACAACCCAGAGGATGCCAATAAGCTTAAAGGGGAAGATATTTTAACCATAAAATCCTATATCCGTAGTGCTTTGAGTGATGAAACACACAAACGGACACCCATCAAATTTGAGCAGCAGCTGAAGGAAATTCA
TGATGTACTTGTCACAAACCTAGTTGAAGGAAATTTGGCAGTAACAGGCTTTTAAGGATTAGTATGCAAGAATAGTTTCTATAAAGATGTGGTCTTTTGCAAGGATGGTTATTTTCTTGTCTAATCCTTCATGGCCATGAGTATTGACAGAGCTTCTAGTTTCTAGATTTTCTAATGATTATAAATTTTGAAGCAGAATA
AACTTGAATTTTTTTTTATCAGAGGTTGTAATTGCACATACAAATTTCAAAACAAGTATATGTTTGTGGACCTTTGATTTTAAAAAAAAA
>TRINITY_DN109442_c1_g1_i3 from sample A3 / Example unspliced isoform:ATTAAAACATCTTCACTAAAAGATAACTCCAACAAGGAAAAATATCATTAAACCCTAGGGCTCCAAAAGATACGTCCGTTCTCTAAAACCCCGAGCGGCACCATTTTTTACCGATCGCAGCTTTTCTCCATTAATTCAAAGTGTGGTGGGTAGAATTTGATTGAAAGCGTAGTGTTTCCATTGATATAAACTATCCATCT
CGAAGGCAGCGAATATTTTCCTCTGCGTGAATCTCGGCCTGCATCCGCTGTGAGCATCCCCTGTTATCTCAGTAAGGACAAGGACAATGGAGTGCTTATCGGGTTTCTGCTTCATTCTGAAGAGCATCTGAAGTTTCATTGCATTTCGAGGGGCGTCTGAGCTTGGTAGGTTTCTCATTATGCATCGCAAGCTTCAACGC
CATATCCTGCAACCTGTGTTTACAAGCAATATTTTGGGAGTTTCACAGGTATCTGCTGGAAGTTACCATGGAAAATCTCAACAACATTTGCTACAATTTCTCTATAAGAGCATTTCTGTTGGGCCACCATTACAAAATATTCCAGCAGCCATCCGATTGTGGCATGGCTGTAGCAGACAGATATCAAGgtcaaaccagtt
ccagttgctgcgtgctttgaaacaatttggttcacaagatttatgttccacatcaaatattcaagtgcatatgcttgtttttcacagGACTCGAGGTATTAGTGGGCTTTCTAGCAGGCCCAAGCTAGTTGATGAAATATACCAGCAACTACGGGCAGGTGGATGGAATTCATCAACAGTGAGCATATTGGAGAGGTTGG
ATGGTATCTATACTCCAAGAATTGTAGCCACGGTTTTGAATGAAAGGATGCCTACTGAGGTTGCAATGGGTTTTTACAATTGGATTATGAATCAAGATGGATTCAAGCCAACAGTGGCTGTATACAATGCAGTGATAGGTATATTGGGAAAGGCTCGAGATGTAGAGAAAATGCAGTCAATCATGGAGGATATGTCTAAA
AATGGATGTGATATGGATGTTGTGACCTACACTCAACTCATACATGCATACAAAATAGCTCGTGACATTGACAGTGCAATCAATGTTTACAATCAGATGAAGGAGAACAACTGCAAACCTAATGTGGTCTTCTACACTGCACTGATTGGTGCTCTTGCCAAGGGCAAGAAATATGAGAAACTGACAGAAATGTATAGTGA
AATGCTAAAAGACCAAGTTTTCCCAAATATGATAACTTTCATTACTCTCATGAAAACTCTCTATAAAGCTGGAAATCTTGACGCTGCTTTTGAAATATTGAAATTGATGCAAAAAATGAAGATTCACCCCAGTCCTTCTATGTATGCTTTGTTTATGGAGGCATATGCAAAGGCAGGTGACATTGAAATGGTAAAGGATC
TCGTTAATGAGATGAAAGAATATGGCTTTTCAGCTGGTCCTATTTATTCCAATGTAATATACCGCTTAGTCAAAGAAGGGAAGGAGAAGGAAGCCATAGTAATTGCACAGTTACTTTGGCCTGATGAGAAGAGTAGGGCTAAATTTCTGAATTTTGAACCATTCTTGAAGGCTCTTCCAAGAATCAAACATGAGAATCTG
GATAATAAGCATGGCAAATTCAGCATTTCTGAAATCACAAAAAGCCTTCAGATTTGGACGCCAGTTACTATTGCAGCTTTAGAGGCTGCATCTGTGGATTGGAAGAGTCATCAAGTAGTGTTGGTGATCAAGCGAGTGAGGAATGCACGCATTGCATCTGAATTTTATTATTGGTTGAAGAATTCAGGTTTCAAGCATGA
TAAACACACTGCTTCTGCCCTTGTCTTGAGGTCGATGAAGTCAAAGAAATTCTCAACCACAATGAAGCTGTTGTATGAACTGAAGGAGGAAGGTATTAAGCTACCATTACTAATATACAATGAGCTCATCAGGTTTGCTTCGACAGAAAAAAATTTCAGAACAGCTCACGCGGCTTTAGGTGTTATTAGAGACACTGGTT
TGAAACCAAATCTAATGACATACTCAAATTTGATTATGGGACTTGCTAATTGTCACCTATATGATTCGGCTTTGAAACTATTTCGAATCATGCTGCGTGATGGAATTTGTCCTGACAACACAACTATCACCACTTTACTCTACCGCATTGGTTCTTCAGATGATCCTGAAAAAGCTGGATCTCTTTTTAAAGAACTTCTA
GAGTATGGCTTGAAATTCAATGCCAATGTTTACATAGCACTCCTATATGCATATCACAAGCATGGGAAATCTGAAATGGCTGTGAAGGTTTACAATGACATGAAAACAGCTGGTTTGGAGCCAGTGTCAGTAGATGGAGATATTGCTGTGGTGTTATCCTCTTTTGACAACCCAGAGGATGCCAATAAGCTTAAAGGGGA
AGATATTTTAACCATAAAATCCTATATCCGTAGTGCTTTGAGTGATGAAACACACAAACGGACACCCATCAAATTTGAGCAGCAGCTGAAGGAAATTCATGATGTACTTGTCACAAACCTAGTTGAAGGAAATTTGGCAGTAACAGGCTTTTAAGGATTAGTATGCAAGAATAGTTTCTATAAAGATGTGGTCTTTTGCA
AGGATGGTTATTTTCTTGTCTAATCCTTCATGGCCATGAGTATTGACAGAGCTTCTAGTTTCTAGATTTTCTAATGATTATAAATTTTGAAGCAGAATAAACTTGAATTTTTTTTTATCAGAGGTTGTAATTGCACATACAAATTTCAAAACAAGTATATGTTTGTGGACCTTTGATTTTAAAAAAAAA