NA ----> NA

Intron 1 GTAAGAATAA ... TATTTGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50.52	24	16	33
A2	59.18	10	17	12
A3	45.05	25	17	24
A4	50	8	8	8
A5	46.67	4	4	3
A6	31.43	24	6	16
A7	33.33	89	44	45
A8	31.69	97	36	54
A9	30.26	53	23	23
A10	30.94	48	22	21

>TRINITY_DN45161_c0_g3_i4 from sample A9 / Example spliced isoform

CGAAGAAGAGTCTTCGAAAGAGGATTGGGTGCATGCATGTATAATCTGACCAAGCGAGCTGAACTACTATGACTAAATAAACGACTGCAACTAATTCGACTGGACTAACCAACACTTTTTGCTGGATAATTTGGCTGGATAGAAGCTTTACCTGAGTGCATGAACCTATGGTCGGTGTAGATGAGTGGAGAATTTTTGAA
CTAAAGAGGAAGATTATGTGATGTAAAGGAAGATGGAGAATATGATTGAACAAAAAGCATTACCTGAATAAGTTTATCAGAATGCAATCTTATATTTTAAGGTGTAAATTTTATTATTTTCATGCAACATTATAACTTATATATTAATAAAAGTATTAATTTTTTTTAGAGAAAGGGTAAACCCCTTTCTCAAAACTCTC
AAAAAGATAGCTATGGCCAAAGCTACCTTTGAGAGGTCTACTCTTTGATT

>TRINITY_DN45161_c0_g3_i6 from sample A9 / Example unspliced isoform:

CGAAGAAGAGTCTTCGAAAGAGGATTGGGTGCATGCATGTATAATCTGACCAAGCGAGCTGAACTACTATGACTAAATAAACGACTGCAACTAATTCGACTGGACTAACCAACACTTTTTGCTGGATAATTTGGCTGGATAGAAGCTTTACCTGAGTGCATGAACCTATGGTCGGTgtaagaataaatcttggtagcttg
tgttatttttactcattatttaaaaaaaatattagttaagatatataatgtaaaggaagatgaagaatatgctttatcatatattattttaaacaaatattaatttattaataaaaatttttgttctatattaataaattttgttttatttgacagGTAGATGAGTGGAGAATTTTTGAACTAAAGAGGAAGATTATGTG
ATGTAAAGGAAGATGGAGAATATGATTGAACAAAAAGCATTACCTGAATAAGTTTATCAGAATGCAATCTTATATTTTAAGGTGTAAATTTTATTATTTTCATGCAACATTATAACTTATATATTAATAAAAGTATTAATTTTTTTTAGAGAAAGGGTAAACCCCTTTCTCAAAACTCTCAAAAAGATAGCTATGGCCAA
AGCTACCTTTGAGAGGTCTACTCTTTGATT