NA ----> NA

Intron 1 GTGAGCTGGT ... TCTTTCCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	14.41	43.3	6.6	7.8
A2	13.17	37.9	4.9	5.8
A3	8.04	21.1	3.6	2.3
A4	9.74	21.6	7.1	2.5
A5	6.25	23.9	5.1	1.9
A6	10.55	53.9	3	8.4
A7	11.2	46	2.3	6.5
A8	6.98	33.6	1.9	3
A9	7.5	57.6	4.1	5.6
A10	8.93	30	1.5	3.8

>TRINITY_DN122432_c0_g1_i1 from sample A1 / Example spliced isoform

GAACCGCCTCATTGAAAGACATAAAGGAAGAGAAGAACATATTTTTGGGATGATATCGATACACCATAATTCTTTCAAAAAGCTTAAACGCGATAATTCAGAGTCATTGAACCGCGAATATAAATTTCATATATGTATTTATGGTTAACGAAAACACGTGTATTACCGGGAAATTTACACAGAACGGAACGACTTCGTTA
CAGAATATTTTATACATATTCGCTTGCACATCATATGTCGGCAGCGACTACTGTGGTGTGATATTCAGCTCAGTATTTCCCTTTGCGCATACACTCTCACTTACACTCACATCCAAGTGATGGACAATCATTCTGCACCAGTTGGTGATCCAGCGTTGCTAGTTGCGGCAGCTTCAGAATTTGCAGCATTCCCAGGCTAT
CTGAGTGATGCCGCCGTAAAGGAGTTTCTGGATCGATTCCCGCTACATCTGATCTTCATTGCACTCAAAAATGGGTTTGATGATTCTGGGCTTGAGGGTTCCTTGGTTTCTTGCTTGGAAAGGATTTTGAAAACATCATATGGAGTCTCTCTTCTTCCTCAGTGTGTGCCTTATGCACAAGCTGGTCTGAAAGCAAATAC
TCCATTGACACGACGACTATCATGCAAAGCTATTGCACAGCTTCTTGAGAACAGCGATAAAGATGAAGGTTTTGGTGTGCGAGCCATTGTTGAGCATGGTGTCTGGCCTTCTATTGTTGCCTGCCTTGCGGATAGTGATGAAAGCGTTGCAACAGCAGCTGCAGAAGCTGTGAAGAATCTTGCAAAATCAACTCGTGGTC
TTGTAAGAGTTGTGCATAATTTAATTCAACGTATACCAAAAGACCATTTCTTCTCTCTCCTGGCATGCACCTGTTACGATGAAAAGATGATTATCCAGTCTCGTTCTTCTATTTATAAAGTCTTTTTGTTCACTTATACATTTGGTATATTGCTCAGGAGCTTATTTTCCCTGGTAAAGCTGAGGAAGCCACACTCTTGA
AGGAATTTTCTATGAATAGTTCTTCAATGGT

>TRINITY_DN122432_c0_g1_i4 from sample A1 / Example unspliced isoform:

GAACCGCCTCATTGAAAGACATAAAGGAAGAGAAGAACATATTTTTGGGATGATATCGATACACCATAATTCTTTCAAAAAGCTTAAACGCGATAATTCAGAGTCATTGAACCGCGAATATAAATTTCATATATGTATTTATGGTTAACGAAAACACGTGTATTACCGGGAAATTTACACAGAACGGAACGACTTCGTTA
CAGAATATTTTATACATATTCGCTTGCACATCATATGTCGGCAGCGACTACTGTGGTGTGATATTCAGCTCAGTATTTCCCTTTGCGCATACACTCTCACTTACACTCACATCCAAGTGATGGACAATCATTCTGCACCAGTTGGTGATCCAGCGTTGCTAGTTGCGGCAGCTTCAGAATTTGCAGCATTCCCAGGCTAT
CTGAGTGATGCCGCCGTAAAGGAGTTTCTGGATCGATTCCCGCTACATCTGATCTTCATTGCACTCAAAAATGGGTTTGATGATTCTGGGCTTGAGGGTTCCTTGGTTTCTTGCTTGGAAAGGATTTTGAAAACATCATATGGAGTCTCTCTTCTTCCTCAGTGTGTGCCTTATGCACAAGCTGGTCTGAAAGCAAATAC
TCCATTGACACGACGACTATCATGCAAAGCTATTGCACAGCTTCTTGAGAACAGCGATAAAGATGAAGGTTTTGGTGTGCGAGCCATTGTTGAGCATGGTGTCTGGCCTTCTATTGTTGCCTGCCTTGCGGATAGgtgagctggtggtaaaaatgttcattttaagttcttgtgttgtctgcttttactcatccacagct
gcatgtatgttgtttttttcttttttgtggttgtttttgcaaaaaggaagatattttacgtaagtaggttctctattttgaaatttttcgttttgtttttccagactggcttactgagatctcacattttctgtatctactttaacatttgttcagctctgtttcgcttgtttcaaacatgtcccgacttctgacaatga
tttgtctgtctttatgttcactctctttccaagTGATGAAAGCGTTGCAACAGCAGCTGCAGAAGCTGTGAAGAATCTTGCAAAATCAACTCGTGGTCTTGTAAGAGTTGTGCATAATTTAATTCAACGTATACCAAAAGACCATTTCTTCTCTCTCCTGGCATGCACCTGTTACGATGAAAAGATGATTATCCAGTCTC
GTTCTTCTATTTATAAAGTCTTTTTGTTCACTTATACATTTGGTATATTGCTCAGGAGCTTATTTTCCCTGGTAAAGCTGAGGAAGCCACACTCTTGAAGGAATTTTCTATGAATAGTTCTTCAATGGTATGTTATCTGATAGAGCATCTGAATTGTATATTTCTTGTTTGAAGGACTCTATTGTCTGCATCTAAACCAT
GCCATATTTCAGATGTATTTCTTTCAAGGATAACCCTTAGAGGGTATGACTATGCTAGGCAATTATGACTCTAAAAGAATAATACACTAATATTTTCTCTATTGTTAGCATCCAAACCATGCCATATTTCAAATGTATGTCTTTAAAGGATAAACCTTAGAGGCTATGACTATGCTAGGCAATCATGACTCATAATAAAA
AGAATAACGTTTTTCTTTTAAATATGAGGAG

Intron 2 GTAAGAGTTG ... TATTGCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	21.73	44.4	12.4	14.3
A2	27.36	39.6	16	3
A3	10.84	43.6	5.4	10.9
A4	20.79	35.4	9.9	9.2
A5	7.64	23.6	2.1	9.1
A6	9.16	77.1	8.3	12.8
A7	12.29	87.8	13	17.4
A8	13.92	61.8	11	4.5
A9	15.06	80.3	15.8	8.1
A10	13.37	60	9.9	13.3

>TRINITY_DN122432_c0_g1_i8 from sample A1 / Example spliced isoform

GAACCGCCTCATTGAAAGACATAAAGGAAGAGAAGAACATATTTTTGGGATGATATCGATACACCATAATTCTTTCAAAAAGCTTAAACGCGATAATTCAGAGTCATTGAACCGCGAATATAAATTTCATATATGTATTTATGGTTAACGAAAACACGTGTATTACCGGGAAATTTACACAGAACGGAACGACTTCGTTA
CAGAATATTTTATACATATTCGCTTGCACATCATATGTCGGCAGCGACTACTGTGGTGTGATATTCAGCTCAGTATTTCCCTTTGCGCATACACTCTCACTTACACTCACATCCAAGTGATGGACAATCATTCTGCACCAGTTGGTGATCCAGCGTTGCTAGTTGCGGCAGCTTCAGAATTTGCAGCATTCCCAGGCTAT
CTGAGTGATGCCGCCGTAAAGGAGTTTCTGGATCGATTCCCGCTACATCTGATCTTCATTGCACTCAAAAATGGGTTTGATGATTCTGGGCTTGAGGGTTCCTTGGTTTCTTGCTTGGAAAGGATTTTGAAAACATCATATGGAGTCTCTCTTCTTCCTCAGTGTGTGCCTTATGCACAAGCTGGTCTGAAAGCAAATAC
TCCATTGACACGACGACTATCATGCAAAGCTATTGCACAGCTTCTTGAGAACAGCGATAAAGATGAAGGTTTTGGTGTGCGAGCCATTGTTGAGCATGGTGTCTGGCCTTCTATTGTTGCCTGCCTTGCGGATAGTGATGAAAGCGTTGCAACAGCAGCTGCAGAAGCTGTGAAGAATCTTGCAAAATCAACTCGTGGTC
TTGAGCTTATTTTCCCTGGTAAAGCTGAGGAAGCCACACTCTTGAAGGAATTTTCTATGAATAGTTCTTCAATGGTGCGCATTCGAATTTTGGCTATTATTGCTGCACTATTTGGTATCTCGGATGAGGCAGCTGCTGCAGTTCACCAATCAGGTCTTCTTGGCATGTTTGAACAAGAACTTAACAGCACGACTGATATG
CTTGCTACATTGAATGTCTTGGAAGTTCTGTATGAGGTACATAGAGAGCAAACGTATCTAGATTGCAAATGTTCTTGAATGAGGTGCAGTGTGATTGAGATATTAGTAATACTGTTGGATGCAAGACAGTTTGTTTTCCATAGAAAGGTAGACTAGTATGTGTTTTAGGATCATCTTTCTGAGGAAAAGATAAACCCTGA
AATCATAGTATAATAATACTGTTTAAGAATGTTGGCATTTATCTGGTTATGACAGATAATATATTGTGGATGCTAACAAACCTTTCGAGAGATTTTTTAAATGCATTTTGCTACTGGATGGTCTACTAGCTAAGTAAACTGTGCCAATTATCTTCTGAATGCCGAGGAAATCATCTATTGAAAAGAATGAGTAGC

>TRINITY_DN122432_c0_g1_i1 from sample A1 / Example unspliced isoform:

GAACCGCCTCATTGAAAGACATAAAGGAAGAGAAGAACATATTTTTGGGATGATATCGATACACCATAATTCTTTCAAAAAGCTTAAACGCGATAATTCAGAGTCATTGAACCGCGAATATAAATTTCATATATGTATTTATGGTTAACGAAAACACGTGTATTACCGGGAAATTTACACAGAACGGAACGACTTCGTTA
CAGAATATTTTATACATATTCGCTTGCACATCATATGTCGGCAGCGACTACTGTGGTGTGATATTCAGCTCAGTATTTCCCTTTGCGCATACACTCTCACTTACACTCACATCCAAGTGATGGACAATCATTCTGCACCAGTTGGTGATCCAGCGTTGCTAGTTGCGGCAGCTTCAGAATTTGCAGCATTCCCAGGCTAT
CTGAGTGATGCCGCCGTAAAGGAGTTTCTGGATCGATTCCCGCTACATCTGATCTTCATTGCACTCAAAAATGGGTTTGATGATTCTGGGCTTGAGGGTTCCTTGGTTTCTTGCTTGGAAAGGATTTTGAAAACATCATATGGAGTCTCTCTTCTTCCTCAGTGTGTGCCTTATGCACAAGCTGGTCTGAAAGCAAATAC
TCCATTGACACGACGACTATCATGCAAAGCTATTGCACAGCTTCTTGAGAACAGCGATAAAGATGAAGGTTTTGGTGTGCGAGCCATTGTTGAGCATGGTGTCTGGCCTTCTATTGTTGCCTGCCTTGCGGATAGTGATGAAAGCGTTGCAACAGCAGCTGCAGAAGCTGTGAAGAATCTTGCAAAATCAACTCGTGGTC
TTgtaagagttgtgcataatttaattcaacgtataccaaaagaccatttcttctctctcctggcatgcacctgttacgatgaaaagatgattatccagtctcgttcttctatttataaagtctttttgttcacttatacatttggtatattgctcagGAGCTTATTTTCCCTGGTAAAGCTGAGGAAGCCACACTCTTGA
AGGAATTTTCTATGAATAGTTCTTCAATGGT