NA ----> NA
Intron 1 GTAAGAAAAA ... TTGTGGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.21 | 119 | 138 | 102 |
| A2 | 59.45 | 117 | 195 | 148 |
| A3 | 52.6 | 155 | 193 | 151 |
| A4 | 51.95 | 185 | 229 | 171 |
| A5 | 57.55 | 59 | 102 | 58 |
| A6 | 44.83 | 16 | 14 | 12 |
| A7 | 48.39 | 160 | 182 | 118 |
| A8 | 47.52 | 37 | 36 | 31 |
| A9 | 51.05 | 140 | 185 | 107 |
| A10 | 46.41 | 183 | 163 | 154 |
>TRINITY_DN119309_c4_g1_i1 from sample A1 / Example spliced isoformCCCCATTCCACAAATACATAACCACCAAACGCTATTTATCTTTACATAAAAAGTTATATCTTTTAATATCAGATTGTTACAACCTTAGAAAATGTAACATAAAGTCGATATTTTATGGAATTGCAAAATAAATGTCGGTTGAAAGAGGCGGCGACGCTTGAGAAACAGATGTGATGAAGAGATTTGTGGGCACCCTTTTG
CGTAGTTGTTTTTGAGTGGGAATTGCATTGCATGTTGGGTAGGGTTTGGGATTCTATAGCATAATCGCATTTATTCTTTTGTATCTGAATCTCCTTCTTTGCTGGTGATCCTGGAGATTGCGTGGTCTAATTTATTTCCACTATTTATTTCCAAACGGTGGAGCAGTTCGGAGAAGCGAACCACGCAACACACAGTCATT
TCTTGATCTAGAACAAGTTTTACAAAATTTCAATGGAGGAGGAGGCAGGAGCCCAAAATGGAACACCCCACAATGGCAATGGCCTTGATGAGCCTGAGGAGGCCGTGGAAGGCCTCCGAAAGCTCAATCAGGCACTCATGAGACGAATCCATGATATTACCGATGAACGGGCTATTTTAACCGATCAGCTGGCTGAAAGG
GAACAGACTGTGAAAGAGTTAGAACAAGGCAAGAATGAATTGGATTCCCGGGTGAGCGATCTGCATAGCAAGATTGAATCTTTGAAAGAGGAGGAGCAGTCTGTTAGGTCTGAGAAAACCCATTTGGAATCCCAGGTGGCCAATATGCGTAGTGAAATTGAGTCTATAATAGAGGACAACAAGTCTGTATGGACAGAGAA
AACTGAGCTGGAGAATTTTGTTAAGGAGCTGAAAACTGATATGGAAATGAAAGAAGCCCAGTTGGAGAAACTTGTAGGGGAGAGGGATAAATTGCAAGGTGCATTAGATGATATCGCAAGAGCAAAGAGAGCTTTAGATGGCGAGAAGCAGGAACTCTTGGCCGCAGTTTTGGAAGCGAAAAGAAGCAATGAAGAGATCA
TTAAACACCAGGAGGAGGTAGAGTTGGCGTGGAAAAATGAAAAGGAGGAATTGGGTTCTTCTCTTGCAGATTCTTCCAGAAAAATTCAGGGATTGGAGGATACTGTTGAAGGTCTAAAGGTCGAGGGTAAACATTTGTCTGATCAGATGGAGGTTACGCGAAGCCAATTGAATGCTGAGATTGAGACATTAAGGAGGGTT
GTGGATGAGATGACCAGAGAGAAGGAGGAGCTTGAAACAGAGGTTGATAGAGTGAATAAACAAGTCGAAATATTGTGCAAGGAAAATGAAGAGCTAAGGGACGAGATTACTTCTTTGAAGGGTGTGGAAAATGACAAAGAGGCTCTGCGTGCAGACTTGGTGAACACGAAGGAAGAATTCCAGACTGTACAGGTTGCAAA
CCAGGAGATGAAAGGAGAAAATGATCGTCTCCTGAGTCAGTTGGATGAAGCGTTTCAACAGCTATCGAAAATCAAAGAAGAAAATGGTAGTCTCCAAGGCCAGTTGGATGAAGTTGTTAAACAGTTATCAGAACTAAAGGGTGGGCTTAATAAGGCTGGTGAAGATCTTTCAAACGAAAATTCGAAGCTGAAATCAGAGA
ATGTGATTCTGCAGCAAAATATAGATCATATGGGCTCTTCAATTGCAGTGTCAGGGAGAACATTTGACGTGTTGCAGGAGGAACACCTTAAATTAACAGAGGGCAAGAAAAAACAAAATAAGGAGATTGAATCATTGCATGTGCAGAAGTCCTGCATTGAGAAAGAGAGGGATATGCTTGCAAAGAAGCTAGAAGAAGTT
CCTAAACAATCAGAAGCTGCTAGCAGGGACATACAGCATACCAGTGATTTAGCGAATCAGGATTTGACCATTGCTTCGGACGAAAATGGTCTGGAGGATAATAACCGCTCTCTAGAAAGTGACACGATGAGGCTGACCTTAGGTTCCGTTGTAGATGAACAAGACCAACTCAAAACAATGATAAGGGATTTGGAAATCAC
TTTGGAATCTGCTAAAACGACCCTTGAAGACAAGAATAGTGATATTGAGCAGTTGATGTCTAAGCTTCAAATTCTTGAAAAACGAAAAGGAAACAGTCTTGCATGGCCTGCTGTGGCAGCATCAACTGGCACTTTAATTGCAGCAGCATGCGTCTGTTACCTCAAATACTCAAAGCATCACTAAGTTATAGTTGAAGTCT
TTGCTATTGCTGTAAGTTTCCTGTAATACATGATATTTAAAATTTTCAGCTTCACATTACTAGCTCACTAAAAAGTTTGTTGATTGAACTGAAGGCAATTTGTTGGATTGCATTGTCAAAACTCATACTATATACACTCCGAGGAGTTTTCATGCAAATGTAAGGGCTCATTTTATTGGCTCATTCATTTGTAGAAATAC
AAATATTTTTGAACCAATAAAATGCTTTTTTTTTCTTTTTCCTTTCAAATGAATGATAGGGTTTTGATTTGATGTTACATATTACCTGAGTACTGGGTATTCTACATGTTAGGCTTGTGGAGGCAGATACTGTTCAGTGGGCTTATTGTGATTTTCTTGCAATTTTCAATTGTCAGAGGAGTTTTTAAGTGTTACGTTAG
TGATATTTTTTCTGTTCTCTTTTTTATTGCTCAGTATAAGGCTTTTGCTTGGGGTGCAGCGAAGTTGTAAATGATAGGAAACTAGGCTAATGTTCTTCTAAAAAATAATTTATCAAATGATCAACCTCAGGATTAACATCTGATTTGCAAGAGATTGCTGGAAATCTTGATGTTCTGTTTTCTAGTGAAGTTTACTTTTA
ACCTTTCCTCATTGTTTTGGATTTCCCATCTAAGCTGAGGTCCACTCAAATTAAGAATATGGTTTTGATGGATTCAATAAGCTGACGACGCAGTATCAAATCTCTTGATTTATTTTCTGACTTATATCTGAATGCCAATGGGTATAGAAAAAATTGATCAATTTTTTGGTGAAGCTGACCATAGTTATAGTTATAGGATT
CGTTTTGGGCTCTTCGCTGATAACTGAGAATTTCTATTTTTTGAAACTGGGTTTCTCTTATCACAATGAGGCCAAAGGCCCAGACTTAGCATTATGGGGGAACCATTAGCACCATTTAGTTCGGTTACCTTCTGTTAAGCAACCACGAGTGGTGATTATCTATCCTTAAGACTCACCCAGGATTCGTACCTGGCCCCAAC
TCTGAGTGGGGGGTATCTATTTTGCCAATGTTGGCTAGGACTTGCACCTAGGCTTAACCATTGTTGTGCGTGGTGGTGCTCATCCACAAGCACACTAGCATTCACTTG
>TRINITY_DN119309_c4_g1_i3 from sample A1 / Example unspliced isoform:CCCCATTCCACAAATACATAACCACCAAACGCTATTTATCTTTACATAAAAAGTTATATCTTTTAATATCAGATTGTTACAACCTTAGAAAATGTAACATAAAGTCGATATTTTATGGAATTGCAAAATAAATGTCGGTTGAAAGAGGCGGCGACGCTTGAGAAACAGATGTGATGAAGAGATTTGTGGGCACCCTTTTG
CGTAGTTGTTTTTGAGTGGGAATTGCATTGCATGTTGGGTAGGGTTTGGGATTCTATAGCATAATCGCATTTATTCTTTTGTATCTGAATCTCCTTCTTTGCTGGTGATCCTGGAGATTGCGTGGTCTAATTTATTTCCACTATTTATTTCCAAACGGTGGAGCAGTTCGGAGAAGCGAACCACGCAACACACAGgtaag
aaaaaggaccttgaaattcatattatgtgttaagagctcatcagagtcacagcctgcctgcttgatactggtattgtatttgtttgtgggtagTCATTTCTTGATCTAGAACAAGTTTTACAAAATTTCAATGGAGGAGGAGGCAGGAGCCCAAAATGGAACACCCCACAATGGCAATGGCCTTGATGAGCCTGAGGAGG
CCGTGGAAGGCCTCCGAAAGCTCAATCAGGCACTCATGAGACGAATCCATGATATTACCGATGAACGGGCTATTTTAACCGATCAGCTGGCTGAAAGGGAACAGACTGTGAAAGAGTTAGAACAAGGCAAGAATGAATTGGATTCCCGGGTGAGCGATCTGCATAGCAAGATTGAATCTTTGAAAGAGGAGGAGCAGTCT
GTTAGGTCTGAGAAAACCCATTTGGAATCCCAGGTGGCCAATATGCGTAGTGAAATTGAGTCTATAATAGAGGACAACAAGTCTGTATGGACAGAGAAAACTGAGCTGGAGAATTTTGTTAAGGAGCTGAAAACTGATATGGAAATGAAAGAAGCCCAGTTGGAGAAACTTGTAGGGGAGAGGGATAAATTGCAAGGTGC
ATTAGATGATATCGCAAGAGCAAAGAGAGCTTTAGATGGCGAGAAGCAGGAACTCTTGGCCGCAGTTTTGGAAGCGAAAAGAAGCAATGAAGAGATCATTAAACACCAGGAGGAGGTAGAGTTGGCGTGGAAAAATGAAAAGGAGGAATTGGGTTCTTCTCTTGCAGATTCTTCCAGAAAAATTCAGGGATTGGAGGATA
CTGTTGAAGGTCTAAAGGTCGAGGGTAAACATTTGTCTGATCAGATGGAGGTTACGCGAAGCCAATTGAATGCTGAGATTGAGACATTAAGGAGGGTTGTGGATGAGATGACCAGAGAGAAGGAGGAGCTTGAAACAGAGGTTGATAGAGTGAATAAACAAGTCGAAATATTGTGCAAGGAAAATGAAGAGCTAAGGGAC
GAGATTACTTCTTTGAAGGGTGTGGAAAATGACAAAGAGGCTCTGCGTGCAGACTTGGTGAACACGAAGGAAGAATTCCAGACTGTACAGGTTGCAAACCAGGAGATGAAAGGAGAAAATGATCGTCTCCTGAGTCAGTTGGATGAAGCGTTTCAACAGCTATCGAAAATCAAAGAAGAAAATGGTAGTCTCCAAGGCCA
GTTGGATGAAGTTGTTAAACAGTTATCAGAACTAAAGGGTGGGCTTAATAAGGCTGGTGAAGATCTTTCAAACGAAAATTCGAAGCTGAAATCAGAGAATGTGATTCTGCAGCAAAATATAGATCATATGGGCTCTTCAATTGCAGTGTCAGGGAGAACATTTGACGTGTTGCAGGAGGAACACCTTAAATTAACAGAGG
GCAAGAAAAAACAAAATAAGGAGATTGAATCATTGCATGTGCAGAAGTCCTGCATTGAGAAAGAGAGGGATATGCTTGCAAAGAAGCTAGAAGAAGTTCCTAAACAATCAGAAGCTGCTAGCAGGGACATACAGCATACCAGTGATTTAGCGAATCAGGATTTGACCATTGCTTCGGACGAAAATGGTCTGGAGGATAAT
AACCGCTCTCTAGAAAGTGACACGATGAGGCTGACCTTAGGTTCCGTTGTAGATGAACAAGACCAACTCAAAACAATGATAAGGGATTTGGAAATCACTTTGGAATCTGCTAAAACGACCCTTGAAGACAAGAATAGTGATATTGAGCAGTTGATGTCTAAGCTTCAAATTCTTGAAAAACGAAAAGGAAACAGTCTTGC
ATGGCCTGCTGTGGCAGCATCAACTGGCACTTTAATTGCAGCAGCATGCGTCTGTTACCTCAAATACTCAAAGCATCACTAAGTTATAGTTGAAGTCTTTGCTATTGCTTACCAAAACTTTGGAAGATTTGAGCTCAGAGTTGAATTTTTGGAGCTGCATCTTGTTCAACAAAGACTAATTTTTGGGTCTAAAGAAGCTC
TAGTCTTTATCCTTGCAAGTGTAGAGTACCGAATTAAGCTGTTGGTTTGGAATGAGATTATCCTTCTCAGAAACTGGTTGACAGTTGGAACATACCAAGTGGAAATTTTAATTAAAGATTTAATGCAAATTTGTGTAAGTTCATCTTTCGATCTTCCATGCCAAGTTTAAGTTCATTATTGGTTGGCGGGGGTTTGGGGA
TCTACTGGTTATCTAATGTCCACATTAGATACATATTTAAATGTTATATTTCTAATTGTGTCTGAGAAATTCCAAAC