sp|Q7XSQ5|CDPKC_ORYSJ ----> Calcium-dependent protein kinase 12

Intron 1 GTGAGTTATT ... TGGGTATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.49	79	114	83
A2	55.88	75	109	81
A3	56.76	48	74	52
A4	68.57	33	79	65
A5	52.74	56	77	48
A6	56.52	10	12	14
A7	42.86	42	51	12
A8	42.27	28	28	13
A9	38.61	31	32	7
A10	43.86	32	31	19

>TRINITY_DN116798_c0_g1_i8 from sample A2 / Example spliced isoform

GGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCAC
ATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGATTTTCCGAGGAAACTTTAACTTTGGATCAGTCTTAAATAATTTGCCAGATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAAAACGGTCCGAACTCCCATTG
CCAGGGATCTCAAGGTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCCTCTCCTCTTCCTCCC

>TRINITY_DN116798_c0_g1_i10 from sample A2 / Example unspliced isoform:

GCCTGTAAAAAGATGCCATATAATGAGATAGATATACAGAGGACCCCAGGAATCTTGAGGATCAGAGCCCACTGCTGCCCGGAACAAGATACATTGTCAAAGAATGTCTACATGTTTTCAGAGCTCTGCGATGGAGGAGATCTCAGAGACAGACAACCATGGCCACGGTATTCTTTCTCAGAGACAGACAACCAGAATAA
TCCAATCTTTTGTCCAGTCCATTAAATTCTGCCAATCGAGGAAAATCATTCACAGAGATGTAAAGCCATCGAGTATTTTTATAGCAAGCAGTGTAAACTCTTCATTCAAGGGCTTTAATCAAACTTGTAAATTTTGATAAGTCGATTTGGAAAGGTAATCTAAATTAGTCATCGACGAGAACGTGGGGACATTGGGATAT
TCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTGGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGT
AAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGAgtgagttattgttttccttggattttgttgatatgcaaactttatttaagact
agagttagggtttaagactagggttagggttttctaactggactgacagttaaaattattctgcttgttgtactataatacattgggtatcagTTTTCCGAGGAAACTTTAACTTTGGATCAGTCTTAAATAATTTGCCAGATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAAAACGGTCCG
AACTCCCATTGCCAGGGATCTCAAGGTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCCTCTCCTCTTCCTCCC

Intron 2 GTGAGTTATT ... TTTGGATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	46.1	134	114	70.5
A2	45.75	130	109.3	83.3
A3	43.55	96.3	74	40.5
A4	59.55	53.8	79	55.5
A5	48.08	83.5	77	43
A6	23.73	43.8	13.5	14.5
A7	36.16	93.8	53	15
A8	29.85	67	28.3	19
A9	32.46	67.5	32	14
A10	32.03	69	32.3	24.8

>TRINITY_DN116798_c0_g1_i6 from sample A2 / Example spliced isoform

CTTCCTCTGAGGTAGTCGAGATTGGAATAGCATAGCTCGAAAGCGAGTTCCTTGGTCTGGTAATCTAAATTAGTCATCGACGAGAACGTGGGGACATTGGGATATTCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTGGTGTTGTATGTTCTTCTCTGTGGTAAGAA
GCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTT
GGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGATCTTAAATAATTTGCCAGATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAAAACGGTCCGAACTCCCATTGCCAGGGATCTCAAGGTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCC
TCTCCTCTTCCTCCC

>TRINITY_DN116798_c0_g1_i10 from sample A2 / Example unspliced isoform:

GCCTGTAAAAAGATGCCATATAATGAGATAGATATACAGAGGACCCCAGGAATCTTGAGGATCAGAGCCCACTGCTGCCCGGAACAAGATACATTGTCAAAGAATGTCTACATGTTTTCAGAGCTCTGCGATGGAGGAGATCTCAGAGACAGACAACCATGGCCACGGTATTCTTTCTCAGAGACAGACAACCAGAATAA
TCCAATCTTTTGTCCAGTCCATTAAATTCTGCCAATCGAGGAAAATCATTCACAGAGATGTAAAGCCATCGAGTATTTTTATAGCAAGCAGTGTAAACTCTTCATTCAAGGGCTTTAATCAAACTTGTAAATTTTGATAAGTCGATTTGGAAAGGTAATCTAAATTAGTCATCGACGAGAACGTGGGGACATTGGGATAT
TCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTGGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGT
AAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGAgtgagttattgttttccttggattttgttgatatgcaaactttatttaagact
agagttagggtttaagactagggttagggttttctaactggactgacagttaaaattattctgcttgttgtactataatacattgggtatcagttttccgaggaaactttaactttggatcagTCTTAAATAATTTGCCAGATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAAAACGGTCCG
AACTCCCATTGCCAGGGATCTCAAGGTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCCTCTCCTCTTCCTCCC

Intron 3 GTGAGTTATT ... TTTGGATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	39	147	112	76
A2	40.93	140	110	84
A3	35.4	104	74	40
A4	55.29	57	79	62
A5	40.47	89	77	44
A6	21.6	49	14	13
A7	23.85	99	53	9
A8	23.71	74	29	17
A9	21.03	77	32	9
A10	26.83	75	33	22

>TRINITY_DN46737_c0_g1_i4 from sample A7 / Example spliced isoform

GGGATATTCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTTGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTATGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCG
ATTCTGTAAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGATCTTAAATAATTTGCCAGATTATTTCCAATGAAGTATCGTTATTGG
GCATGTGATAAATTTTGGGGAAAACGGTCCGAACTCCCATTGCCAGGGATCTCAAGCTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCCTCTCCTCTTCCTCCTCTCAG

>TRINITY_DN46737_c0_g1_i3 from sample A7 / Example unspliced isoform:

GGGATATTCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTTGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTATGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCG
ATTCTGTAAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGAgtgagttattgttttccttggattttgttgatatgcaaactttatt
taagactagagttagggtttaagactagggttagggttttctaactggactgacatagttaaaattattctgcttgttgtactataatacattgggtatcagttttccgaggaaactttaactttggatcagTCTTAAATAATTTGCCAGATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAA
AACGGTCCGAACTCCCATTGCCAGGGATCTCAAGGTATTGCAAGG

Intron 4 GTGAGTTATT ... AATTTGCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	31.99	186	112	63
A2	35.15	167	110	71
A3	29.78	125	74	32
A4	51.2	61	79	49
A5	35.88	109	77	45
A6	18.88	58	14	13
A7	20.7	113	53	6
A8	20.55	87	29	16
A9	19.23	84	32	8
A10	21.88	100	33	23

>TRINITY_DN46737_c0_g1_i1 from sample A7 / Example spliced isoform

GGGATATTCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTTGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTATGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCG
ATTCTGTAAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGAATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGG
GGAAAACGGTCCGAACTCCCATTGCCAGGGATCTCAAGCTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCCTCTCCTCTTCCTCCTCTCAG

>TRINITY_DN46737_c0_g1_i3 from sample A7 / Example unspliced isoform:

GGGATATTCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTTGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTATGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCG
ATTCTGTAAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGAgtgagttattgttttccttggattttgttgatatgcaaactttatt
taagactagagttagggtttaagactagggttagggttttctaactggactgacatagttaaaattattctgcttgttgtactataatacattgggtatcagttttccgaggaaactttaactttggatcagtcttaaataatttgccagATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAA
AACGGTCCGAACTCCCATTGCCAGGGATCTCAAGGTATTGCAAGG

Intron 5 GTGAGTTATT ... AATTTGCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	39.51	171.3	114	108.8
A2	41.21	156.8	109	110.3
A3	37.48	114.3	74	62.5
A4	55.13	58	79	62
A5	41.02	103.5	77	66.8
A6	29.14	51.5	13	29.5
A7	27.15	105.8	52	27.3
A8	28.53	80.8	28	37.3
A9	26.15	80.8	32	25.5
A10	30.54	90.5	31.8	48.5

>TRINITY_DN116798_c0_g1_i7 from sample A2 / Example spliced isoform

CTTCCTCTGAGGTAGTCGAGATTGGAATAGCATAGCTCGAAAGCGAGTTCCTTGGTCTGGTAATCTAAATTAGTCATCGACGAGAACGTGGGGACATTGGGATATTCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTGGTGTTGTATGTTCTTCTCTGTGGTAAGAA
GCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTT
GGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGAATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAAAACGGTCCGAACTCCCATTGCCAGGGATCTCAAGGTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCCTCTCCTCTTCCTCCC

>TRINITY_DN116798_c0_g1_i10 from sample A2 / Example unspliced isoform:

GCCTGTAAAAAGATGCCATATAATGAGATAGATATACAGAGGACCCCAGGAATCTTGAGGATCAGAGCCCACTGCTGCCCGGAACAAGATACATTGTCAAAGAATGTCTACATGTTTTCAGAGCTCTGCGATGGAGGAGATCTCAGAGACAGACAACCATGGCCACGGTATTCTTTCTCAGAGACAGACAACCAGAATAA
TCCAATCTTTTGTCCAGTCCATTAAATTCTGCCAATCGAGGAAAATCATTCACAGAGATGTAAAGCCATCGAGTATTTTTATAGCAAGCAGTGTAAACTCTTCATTCAAGGGCTTTAATCAAACTTGTAAATTTTGATAAGTCGATTTGGAAAGGTAATCTAAATTAGTCATCGACGAGAACGTGGGGACATTGGGATAT
TCTGCTCCAGAGATGCTGAGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTGGTGTTGTATGTTCTTCTCTGTGGTAAGAAGCCTTTCGATGTGGATAATGAAGACGCCAACAGCATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGT
AAAGGAACATGTACGATAAAATACAGAATACAAAGCCAGATCTCAGTAGCGGTTTATGGAGCCACATAGCCGATTCTGTAAAGGAACTGGTTCTTGGAATGTTGCAGACGGACCCAACGCGGCGACTTTCTTGCAATCAAATCTTGAgtgagttattgttttccttggattttgttgatatgcaaactttatttaagact
agagttagggtttaagactagggttagggttttctaactggactgacagttaaaattattctgcttgttgtactataatacattgggtatcagttttccgaggaaactttaactttggatcagtcttaaataatttgccagATTATTTCCAATGAAGTATCGTTATTGGGCATGTGATAAATTTTGGGGAAAACGGTCCG
AACTCCCATTGCCAGGGATCTCAAGGTATTGCAACGGTCCGAACTCCCATTGGCATTGGCATTCCCTAGCCTCTCCTCTTCCTCCC