NA ----> NA
Intron 1 GTATGCCTAA ... GAGATCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.59 | 154.2 | 41.7 | 35 |
| A2 | 23 | 185.8 | 46.7 | 55 |
| A3 | 16 | 208.2 | 66.2 | 39 |
| A4 | 11.89 | 149.7 | 28.5 | 20 |
| A5 | 23.59 | 108.2 | 45.5 | 33 |
| A6 | 19.65 | 1155.3 | 310.4 | 279 |
| A7 | 16.28 | 986.1 | 243.6 | 189 |
| A8 | 21.12 | 700.5 | 159.9 | 186 |
| A9 | 25.15 | 839.6 | 232.8 | 280 |
| A10 | 21.83 | 789.9 | 207.6 | 218 |
>TRINITY_DN104678_c0_g1_i3 from sample A1 / Example spliced isoformACCTGATAGTGGTGGTCCGGTGGATAAATTGATGTTGTCCGAATTGATTTCTGTGGGTGAGGGAACTGGGCGTCCAATCGAAATTTATTCAATTCCTCGTCGTTTCAGATCGAGATCTTCCCCGGTTGATTATCGACGCACATACCTATCAGGGAATCGCCCAGGCCTCCCTTCCTAAACGCCGAGGCAGAGGCAGACGC
TATCAAACTACGGAGAAGATCTCGATCTGAAACGACGAGGAATTGAATAAATTTCGATTGGACGCCCAGTTCCCTCACCCACAGAAATCAATTCGGACAACATCAATTTATCCACCGGACCACCACTATCAGGTCGCCAGATCCAATCCCCGCCGCGCAAAATAAATCGAAGAGGGCAAATGAGCTCTGTAGATCGAGGA
GAGGCTCCATGTGGGTGTGAAAGAAAATCATCCATCGAAACGGAGCCGCGCACTCTCTATGAGGTTCAGCTCCAAGAAGCCAGGGAGGAAGCCATTGATATTTTAAATAACAACGAACCAGAGGAAGCTCTCAACATTTTCTCGCAGAGAGGAACTGTTTCCACGCACGGATCCAGGTGTCCCCCTCCTGTATTTGCAGT
GGAGGATGAGATGCAGCAGGGTTTGAGAGATAAACAGGCCCATGTGAGGAACCTCATCATAGAAAAAGAAGATGACCATCAGCAGCAGCACTCTGAGCATAACAAGAAGCAGGAGGAGAATTTTGTGATTGCTAATTCTGAGCTGAATGTGGGACAGAATGATCAGCCTCCCTTTACTGAAAGAAGGGTCACCATAGAGG
CGGCCTCTGCTCCAGTTTGAAGGACTAGTGGAATGGAATTGACTTCTACTTATGGACATAGACATGAATGAATCAGTATCACTCATAGAGTCACTTTTTGTTTAATGCTTCATTTATCTTCAATGTTTTATGTTTTGCTGCTGCAGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGC
ATATGTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTACTTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCATTCATCTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGCATAT
GTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTGCCTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCATTCATCTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTA
>TRINITY_DN104678_c0_g1_i1 from sample A1 / Example unspliced isoform:ACCTGATAGTGGTGGTCCGGTGGATAAATTGATGTTGTCCGAATTGATTTCTGTGGGTGAGGGAACTGGGCGTCCAATCGAAATTTATTCAATTCCTCGTCGTTTCAGATCGAGATCTTCCCCGGTTGATTATCGACGCACATACCTATCAGGGAATCGCCCAGGCCTCCCTTCCTAAACGCCGAGGCAGAGGCAGACGC
TATCAAACTACGGAGAAGATCTCGATCTGAAACGACGAGGAATTGAATAAATTTCGATTGGACGCCCAGTTCCCTCACCCACAGAAATCAATTCGGACAACATCAATTTATCCACCGGACCACCACTATCAGGTCGCCAGATCCAATCCCCGCCGCGCAAAATAAATCGAAGAGGGCAAATGAGCTCTGTAGATCGAGGA
GAGGCTCCATGTGGGTGTGAAAGAAAATCATCCATCGAAACGGAGCCGCGCACTCTCTATGAGGTTCAGCTCCAAGAAGCCAGGGAGGAAGCCATTGATATTTTAAATAACAACGAACCAGAGGAAGCTCTCAACATTTTCTCGCAGgtatgcctaacaaccccatctatcgatatgtcggtcgtttcctttaagaaatg
cactgatatataaagaatatgtgtgtgagatcatagAGAGGAACTGTTTCCACGCACGGATCCAGGTGTCCCCCTCCTGTATTTGCAGTGGAGGATGAGATGCAGCAGGGTTTGAGAGATAAACAGGCCCATGTGAGGAACCTCATCATAGAAAAAGAAGATGACCATCAGCAGCAGCACTCTGAGCATAACAAGAAGCA
GGAGGAGAATTTTGTGATTGCTAATTCTGAGCTGAATGTGGGACAGAATGATCAGCCTCCCTTTACTGAAAGAAGGGTCACCATAGAGGCGGCCTCTGCTCCAGTTTGAAGGACTAGTGGAATGGAATTGACTTCTACTTATGGACATAGACATGAATGAATCAGTATCACTCATAGAGTCACTTTTTGTTTAATGCTTC
ATTTATCTTCAATGTTTTATGTTTTGCTGCTGCAGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGCATATGTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTACTTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCA
TTCATCTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGCATATGTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTGCCTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCATTCA
TCTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTA
Intron 2 GTCGGTTCAA ... TCCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.91 | 122.5 | 25.3 | 19.4 |
| A2 | 22.72 | 132.5 | 39.4 | 9.7 |
| A3 | 16.27 | 188 | 37 | 13.1 |
| A4 | 15.27 | 101.5 | 17.1 | 9.1 |
| A5 | 19.35 | 127 | 31.7 | 8.3 |
| A6 | 16.75 | 950 | 194 | 36.4 |
| A7 | 18.49 | 867.5 | 200.9 | 33.3 |
| A8 | 14.95 | 499 | 87.4 | 31.7 |
| A9 | 18.21 | 698 | 158.9 | 39.6 |
| A10 | 20.02 | 702.5 | 181 | 25.3 |
>TRINITY_DN104678_c0_g1_i3 from sample A1 / Example spliced isoformACCTGATAGTGGTGGTCCGGTGGATAAATTGATGTTGTCCGAATTGATTTCTGTGGGTGAGGGAACTGGGCGTCCAATCGAAATTTATTCAATTCCTCGTCGTTTCAGATCGAGATCTTCCCCGGTTGATTATCGACGCACATACCTATCAGGGAATCGCCCAGGCCTCCCTTCCTAAACGCCGAGGCAGAGGCAGACGC
TATCAAACTACGGAGAAGATCTCGATCTGAAACGACGAGGAATTGAATAAATTTCGATTGGACGCCCAGTTCCCTCACCCACAGAAATCAATTCGGACAACATCAATTTATCCACCGGACCACCACTATCAGGTCGCCAGATCCAATCCCCGCCGCGCAAAATAAATCGAAGAGGGCAAATGAGCTCTGTAGATCGAGGA
GAGGCTCCATGTGGGTGTGAAAGAAAATCATCCATCGAAACGGAGCCGCGCACTCTCTATGAGGTTCAGCTCCAAGAAGCCAGGGAGGAAGCCATTGATATTTTAAATAACAACGAACCAGAGGAAGCTCTCAACATTTTCTCGCAGAGAGGAACTGTTTCCACGCACGGATCCAGGTGTCCCCCTCCTGTATTTGCAGT
GGAGGATGAGATGCAGCAGGGTTTGAGAGATAAACAGGCCCATGTGAGGAACCTCATCATAGAAAAAGAAGATGACCATCAGCAGCAGCACTCTGAGCATAACAAGAAGCAGGAGGAGAATTTTGTGATTGCTAATTCTGAGCTGAATGTGGGACAGAATGATCAGCCTCCCTTTACTGAAAGAAGGGTCACCATAGAGG
CGGCCTCTGCTCCAGTTTGAAGGACTAGTGGAATGGAATTGACTTCTACTTATGGACATAGACATGAATGAATCAGTATCACTCATAGAGTCACTTTTTGTTTAATGCTTCATTTATCTTCAATGTTTTATGTTTTGCTGCTGCAGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGC
ATATGTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTACTTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCATTCATCTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGCATAT
GTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTGCCTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCATTCATCTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTA
>TRINITY_DN104678_c0_g1_i2 from sample A1 / Example unspliced isoform:ACCTGATAGTGGTGGTCCGGTGGATAAATTGATGTTGTCCGAATTGATTTCTGTGGGTGAGGGAACTGGGCGTCCAATCGAAATTTATTCAATTCCTCGTCGTTTCAGATCGAGATCTTCCCCGGTTGATTATCGACGCACATACCTATCAGGGAATCGCCCAGGCCTCCCTTCCTAAACGCCGAGGCAGAGGCAGACGC
TATCAAACTACGGAGAAGATCTCGATCTGAAACGACGAGGAATTGAATAAATTTCGATTGGACGCCCAGTTCCCTCACCCACAGAAATCAATTCGGACAACATCAATTTATCCACCGGACCACCACTATCAGGTCGCCAGATCCAATCCCCGCCGCGCAAAATAAATCGAAGAGGGCAAATGAGCTCTGTAGATCGAGGA
GAGGCTCCATGTGGGTGTGAAAGAAAATCATCCATCGAAACGGAGCCGCGCACTCTCTATGAGGTTCAGCTCCAAGAAGCCAGGgtcggttcaactttctttgtttgcatatatccagtccttcattcctttcttttttcatttatattaatttgtatattctccaatgcagGAGGAAGCCATTGATATTTTAAATAACA
ACGAACCAGAGGAAGCTCTCAACATTTTCTCGCAGAGAGGAACTGTTTCCACGCACGGATCCAGGTGTCCCCCTCCTGTATTTGCAGTGGAGGATGAGATGCAGCAGGGTTTGAGAGATAAACAGGCCCATGTGAGGAACCTCATCATAGAAAAAGAAGATGACCATCAGCAGCAGCACTCTGAGCATAACAAGAAGCAG
GAGGAGAATTTTGTGATTGCTAATTCTGAGCTGAATGTGGGACAGAATGATCAGCCTCCCTTTACTGAAAGAAGGGTCACCATAGAGGCGGCCTCTGCTCCAGTTTGAAGGACTAGTGGAATGGAATTGACTTCTACTTATGGACATAGACATGAATGAATCAGTATCACTCATAGAGTCACTTTTTGTTTAATGCTTCA
TTTATCTTCAATGTTTTATGTTTTGCTGCTGCAGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGCATATGTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTACTTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCAT
TCATCTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTAAGATACACATTTATAGTACTTTCAACCTTGGCATATGTAACAAAGGAATGGAGTCCCTAAGTTTAGGCTAAGCCTAAGCCTGCCTTGATGGGTATCTTAACTTCTATTAAAGGTGCACATGTCACTTTTTGTTTAATGATTCATTCAT
CTTCAATGTTTTATGTTCAGCTGCTGCAGCATATGTTTAATGTGTGTA