sp|Q8VYB9|JMJ27_ARATH ----> Lysine-specific demethylase JMJ27
Intron 1 GTACTGTGTT ... TTTGCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.39 | 71 | 7.7 | 16 |
| A2 | 13.21 | 46 | 5.3 | 7 |
| A3 | 11.76 | 45 | 5 | 6 |
| A4 | 10.53 | 51 | 5.7 | 6 |
| A5 | 9.38 | 29 | 0 | 3 |
| A6 | 0 | 6 | 2 | 0 |
| A7 | 11.11 | 32 | 3.3 | 4 |
| A8 | 0 | 12 | 4.7 | 0 |
| A9 | 11.54 | 23 | 2 | 3 |
| A10 | 7.69 | 48 | 7.3 | 4 |
>TRINITY_DN114413_c0_g3_i9 from sample A1 / Example spliced isoformCACAAAACCGCGGGCACATGCGCATTCAAATCTAGGGCGCGAATTCGAAACTCAAATCAAGATAAGCACGCTATCTCTAGACGACGGCGCTGTATCGCGGCTTGCTCGAGAAGTTTCCGGTGAACAGGGCCAGTCTCACGGAGCCCGAGCAGGCAGACATACGAAAACCGGCCCACGCCGTCGTTTTGGCAAACAGCGGA
CCAGACTTGCCGGGAAATTGAAATCGGGGGGTTTATTTTTAGCGGGAAGTTTCAAAGCAGAACCCTTGACGAGAATTTACGGCTGCTGTGATTTAAAAAGGATTTTGCAGAGCTGCGGAGAGCAGGCGAATCGGGTGAGGGAAGTGGAAGCGGATTGAGGTTTGCGACGGATATGAATGAGGAGAATTTAGAAAAATTGT
CAGAGTCTCGTTCGGGTCAGGCAGGCGGTCACATGGCAAAGGGGGGCAGGGCTGCATCAGTGCCAGAGACAGAACCCATCCCGGACGAGTTACGCTGCAGGCGGAATGACGGGAAGCAATGGCGATGCAGCGGCCGTGCATTGCCCGAGCGTTGTCTTTGCCAGAAGCACCATTTACAGCAGCTCGTGCGGGCGCAGCAG
GGGTTGGCGAGCACCAAGAGCACCAAGAGAGCTAAGAAACCGGAGGTCGTGGTCAAAGAGAAGAAGAAGAGGGGCAGGAAGCCCAGGGCGCAGTTAAATGAGGGTCAGGAGGGTTCCGAGAGTGCTAAGAATTTGAAGCCGCCAGGGAAGAAAAGAGGGCGGAAACCGAAGATACGCAAGCCGGAGGACGAGGGACAAGA
ATTCGCTGTGTCGGAACCTGAAAAGCGTGTTAAGAAGAGGAGAAGGAGGGCGAAGAATGGTGATCTTGATCACGAGCTTGTGAGGAAAAAAAAGAGAGCCAAGAGGACTGATGATGACATTGTACGAGATTCGACCGCAGAGCCTCCGCGTAGTGGGCGCCCGGGTTCGGCTGAGGCTCCTTTGCATTTCTCGAAGGTGT
TCGATAATGTAGAAGCTAAAGTGGAGGCCGGTGAACAGGTCGAGTTTAGTTTGCCAGAATTCGGTGCTCGGACTAAGAGAAAATACGTCAAGAAAGCACAGAATAAGCCGGTTCTGTCAAAGAAAGAGGATCCTGATTATAAACCTGTAAGAAGGGGGAGGAAACCAAATGGGAAAGTCCGTGCACGGGATTTGACTATG
GAACCTATCCACAGTGGGTGTCTTGATGTACCGAATGGATTGATGGAGGTTCCTGCACGTGCAGACGATGATTTTTCTAAGGTGTTTAGTAAGGTGGACACTTCGGGGCAGGTTGAGTTTAGTTTGTCGGATCTTGAGACAGTTCGGACCAAGAGAAAATATGTCAAGAAAATGAAGGACAAGACAGATCCGGAGCTTCA
AGTATGTTCTTTGTCTCAGGATATTGCTGAGGAAGAGAAAGCAAAGAATTCATCATCAGAGAGATTAAGTTTGATGTGCCACCAGTGTCAGCGAAATGACAAAGGAAAGGTGGTTTGGTGCTCCAAATGTAACAAACGTTACTGTATCTTCTGCACTAAAAGATGGTACCCCTTGCAAACTCATCAGGAGATTGCCAAGG
CATGTCCGTTTTGTCGGGGGAACTGCAACTGTAAGGCTTGTTTGCGGCGAGGAAGTCGTCTCAAGGTCCGCACAAAGCAGACAACCACAGCTGATATGGTTCATTACTCCCAGTACTCAATTTGCATGCTTCTTCCTATGCTGACTAAATTTCAAGAGGAGCAAATCAGGGAGCAAGTAGTGGAGGCTAGGATCCAGGGA
AAATCAACAGAAAACCTGGAGATTCCCAGGGCAAAAATCTCTTCAGATGAGCGCCTTTACTGTGACAACTGCAATACCTCTATTGTAGATTTTCACAGAAGCTGTCCAGATTGTTCGTATGATCTTTGTATTAGTTGTTGTAGAGAGCTTCGAGAAGGCTGTCAGCCTGGGGGTGATTCAGCAGAGTCATCCCAACAGCA
GTACACAAAAAGAGTTTATGCCCAGTCAGAGAATATGAAACAAAAAAAAAAAGCAAGGGAAAGCACAGGCCGGGAAGGTCGGGACGGTCACAATGCACAACCACTTAAACCATTGCCTGATTGGAAAGTTAACTGTGATGGTTCTATCCCATGCCCACCCAAAGAACGTGGTGGTTGTGGAAATAACTTGTTACAGTTAA
CGAGCATGTTTGAGTCAAATTGGGTTGCAGAACTTAGGGAAAAAGCACAAAAAATTGCCGGTAGCTGTGAATTGCCAGAGGCATTAAGGGATTCCCAGCCATGTTCTTTGTGCTTCAAGGCTGATTCTCAGGACACGATTGAGCTTTCTGATAAGTTACGAAGATCATCCAACAGAAAGGATAGCAGTGACAACTATGTA
TATTCTCCAACTGTTCAGGATATCAAATGTGAGAATCTTCAGCATTTTCAGAAACACTGGATTAGAGGTGAGCCTGTGATTGTACGGAATGTTTTAGATGATACATCAGGGTTGAGTTGGGAGCCAATGGTCATGTGGCGGGCTTTCAGGGAGACTACCAAGGGAAAATTTAGGGAAGAGACAAAAACAGTGAATGCTAT
TGATTGCCTGGATTGGTTTACGGTTGAGATAAATATTCATCAATTTTTTAAAGGTTATACAGAGGGAAGGATGCACAAGAATCTGTGGCCTGAAATGTTGAAGTTGAAGGATTGGCCTCCCTCAAATTTCTTCGAGGAACGTTTACCACGACATGGTGCTGAATTTATCACTGCCTTACCTTTCCAGGAATATGCCCATC
CTAAATCTGGGCTTCTAAATCTTGCCACAAAGCTTCCAGTGAACTGCTTGAAACCTGATTTAGGGCCGAAAACATATATAGCTTATGGCGTCCGGGAAGAACTTGGTAGAGGAGATTCAGTGACAAAGTTGCACTGTGACATGTCTGATGCGGTAAGCATTGCTTTCTTGCAAATATGATCTTACTATATTTTGCTTTTG
ATAGTGCAAATTGGCAACGTATAGTTTTGTGCATCCTTGTGTGTAGGAGTGGTATCAAA
>TRINITY_DN114413_c0_g3_i6 from sample A1 / Example unspliced isoform:CACAAAACCGCGGGCACATGCGCATTCAAATCTAGGGCGCGAATTCGAAACTCAAATCAAGATAAGCACGCTATCTCTAGACGACGGCGCTGTATCGCGGCTTGCTCGAGAAGTTTCCGGTGAACAGGGCCAGTCTCACGGAGCCCGAGCAGGCAGACATACGAAAACCGGCCCACGCCGTCGTTTTGGCAAACAGCGGA
CCAGACTTGCCGGGAAATTGAAATCGGGGGGTTTATTTTTAGCGGGAAGTTTCAAAGCAGAACCCTTGACGAGAATTTACGGCTGCTGTGATTTAAAAAGGATTTTGCAGAGCTGCGGAGAGCAGGCGAATCGGGTGAGGGAAGTGGAAGCGGATTGAGGTTTGCGACGGATATGAATGAGGAGAATTTAGAAAAATTGT
CAGAGTCTCGTTCGGGTCAGGCAGGCGGTCACATGGCAAAGGGGGGCAGGGCTGCATCAGTGCCAGAGACAGAACCCATCCCGGACGAGTTACGCTGCAGGCGGAATGACGGGAAGCAATGGCGATGCAGCGGCCGTGCATTGCCCGAGCGTTGTCTTTGCCAGAAGCACCATTTACAGCAGCTCGTGCGGGCGCAGCAG
GGGTTGGCGAGCACCAAGAGCACCAAGAGAGCTAAGAAACCGGAGGTCGTGGTCAAAGAGAAGAAGAAGAGGGGCAGGAAGCCCAGGGCGCAGTTAAATGAGGGTCAGGAGGGTTCCGAGAGTGCTAAGAATTTGAAGCCGCCAGGGAAGAAAAGAGGGCGGAAACCGAAGATACGCAAGCCGGAGGACGAGGGACAAGA
ATTCGCTGTGTCGGAACCTGAAAAGCGTGTTAAGAAGAGGAGAAGGAGGGCGAAGAATGGTGATCTTGATCACGAGCTTGTGAGGAAAAAAAAGAGAGCCAAGAGGACTGATGATGACATTGTACGAGATTCGACCGCAGAGCCTCCGCGTAGTGGGCGCCCGGGTTCGGCTGAGGCTCCTTTGCATTTCTCGAAGGTGT
TCGATAATGTAGAAGCTAAAGTGGAGGCCGGTGAACAGGTCGAGTTTAGTTTGCCAGAATTCGGTGCTCGGACTAAGAGAAAATACGTCAAGAAAGCACAGAATAAGCCGGTTCTGTCAAAGAAAGAGGATCCTGATTATAAACCTGTAAGAAGGGGGAGGAAACCAAATGGGAAAGTCCGTGCACGGGATTTGACTATG
GAACCTATCCACAGTGGGTGTCTTGATGTACCGAATGGATTGATGGAGGTTCCTGCACGTGCAGACGATGATTTTTCTAAGGTGTTTAGTAAGGTGGACACTTCGGGGCAGGTTGAGTTTAGTTTGTCGGATCTTGAGACAGTTCGGACCAAGAGAAAATATGTCAAGAAAATGAAGGACAAGACAGATCCGGAGCTTCA
AGTATGTTCTTTGTCTCAGGATATTGCTGAGGAAGAGAAAGCAAAGAATTCATCATCAGAGAGATTAAGTTTGATGTGCCACCAGTGTCAGCGAAATGACAAAGGAAAGGTGGTTTGGTGCTCCAAATGTAACAAACGTTACTGTATCTTCTGCACTAAAAGATGGTACCCCTTGCAAACTCATCAGGAGATTGCCAAGG
CATGTCCGTTTTGTCGGGGGAACTGCAACTGTAAGGCTTGTTTGCGGCGAGGAAGTCGTCTCAAGGTCCGCACAAAGCAGACAACCACAGCTGATATGGTTCATTACTCCCAGTACTCAATTTGCATGCTTCTTCCTATGCTGACTAAATTTCAAGAGGAGCAAATCAGGGAGCAAGTAGTGGAGGCTAGGATCCAGGGA
AAATCAACAGAAAACCTGGAGATTCCCAGGGCAAAAATCTCTTCAGATGAGCGCCTTTACTGgtactgtgttctgtttctatttttctcaactcaaatgtccaagtctgctatggaaacagggttatgatttcttaagatactgatcatgttgatagtgtgatggaaatactttatctgataaaattttctcatttttgc
cacagTGACAACTGCAATACCTCTATTGTAGATTTTCACAGAAGCTGTCCAGATTGTTCGTATGATCTTTGTATTAGTTGTTGTAGAGAGCTTCGAGAAGGCTGTCAGCCTGGGGGTGATTCAGCAGAGTCATCCCAACAGCAGTACACAAAAAGAGTTTATGCCCAGTCAGAGAATATGAAACAAAAAAAAAAAGCAAG
GGAAAGCACAGGCCGGGAAGGTCGGGACGGTCACAATGCACAACCACTTAAACCATTGCCTGATTGGAAAGTTAACTGTGATGGTTCTATCCCATGCCCACCCAAAGAACGTGGTGGTTGTGGAAATAACTTGTTACAGTTAACGAGCATGTTTGAGTCAAATTGGGTTGCAGAACTTAGGGAAAAAGCACAAAAAATTG
CCGGTAGCTGTGAATTGCCAGAGGCATTAAGGGATTCCCAGCCATGTTCTTTGTGCTTCAAGGCTGATTCTCAGGACACGATTGAGCTTTCTGATAAGTTACGAAGATCATCCAACAGAAAGGATAGCAGTGACAACTATGTATATTCTCCAACTGTTCAGGATATCAAATGTGAGAATCTTCAGCATTTTCAGAAACAC
TGGATTAGAGGTGAGCCTGTGATTGTACGGAATGTTTTAGATGATACATCAGGGTTGAGTTGGGAGCCAATGGTCATGTGGCGGGCTTTCAGGGAGACTACCAAGGGAAAATTTAGGGAAGAGACAAAAACAGTGAATGCTATTGATTGCCTGGATTGGTTTACGGTTGAGATAAATATTCATCAATTTTTTAAAGGTTA
TACAGAGGGAAGGATGCACAAGAATCTGTGGCCTGAAATGTTGAAGTTGAAGGATTGGCCTCCCTCAAATTTCTTCGAGGAACGTTTACCACGACATGGTGCTGAATTTATCACTGCCTTACCTTTCCAGGAATATGCCCATCCTAAATCTGGGCTTCTAAATCTTGCCACAAAGCTTCCAGTGAACTGCTTGAAACCTG
ATTTAGGGCCGAAAACATATATAGCTTATGGCGTCCGGGAAGAACTTGGTAGAGGAGATTCAGTGACAAAGTTGCACTGTGACATGTCTGATGCGGTCAATGTTTTAACACATACTGCAGACATCAAGTTCTCTCCTTCACAACAAAATGAGATAGAGAAATTGAAAAAAAAATACAGAGCAATGGATTCTAAGGATCGT
GTTAGCATAAATGAATCACCCTTGCCACGCAGAGCTGAAGCACGTAAAAAGCATGGTGAAATTGGGTGTATGGTGTCTGGAAATATTGTTGACAGGCTCGAAGAACAAGATTCGGTTGACACTGAAAGTAGGCCTGAGATTTTGGGAAAGATGGAAAGCAAGGGAGTTGGTTCAAAGCCTTCAAAGATAGAAGCAAAGGT
TGCCAGCAGAAATAATAACTCTGAATATGGTGGTGCACTTTGGGATATTTTTCGGAGAGAGGATGTACCAAAGTTACATGCATATCTCCAAAAACACTGGAATGAATTCAGGCATATTATGAATAAACCTCTCGAAGAAGTTGTTCATCCTATTCATGATCAGACAATTTACTTGAATGTAGAGCATAAAAGGAAGCTGA
AAGAGGAATTTCAGGTAGAGCCATGGACATTTGAACAACATCTTGGAGAGGCAGTTTTTATTCCAGCTGGATGTCCACATCAAGTACGGAA
Intron 2 ATGAGCGCCT ... TTTTTGCCAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.85 | 77 | 13 | 16 |
| A2 | 17.14 | 58 | 19 | 5 |
| A3 | 16.13 | 52 | 14 | 6 |
| A4 | 13.6 | 54 | 11 | 6 |
| A5 | 11.39 | 35 | 6 | 3 |
| A6 | 20 | 6 | 3 | 0 |
| A7 | 15.91 | 37 | 11 | 3 |
| A8 | 25.58 | 16 | 11 | 0 |
| A9 | 14.75 | 26 | 6 | 3 |
| A10 | 19.75 | 65 | 28 | 4 |
>TRINITY_DN114413_c0_g3_i13 from sample A1 / Example spliced isoformCACAAAACCGCGGGCACATGCGCATTCAAATCTAGGGCGCGAATTCGAAACTCAAATCAAGATAAGCACGCTATCTCTAGACGACGGCGCTGTATCGCGGCTTGCTCGAGAAGTTTCCGGTGAACAGGGCCAGTCTCACGGAGCCCGAGCAGGCAGACATACGAAAACCGGCCCACGCCGTCGTTTTGGCAAACAGCGGA
CCAGACTTGCCGGGAAATTGAAATCGGGGGGTTTATTTTTAGCGGGAAGTTTCAAAGCAGAACCCTTGACGAGAATTTACGGCTGCTGTGATTTAAAAAGGATTTTGCAGAGCTGCGGAGAGCAGGCGAATCGGGTGAGGGAAGTGGAAGCGGATTGAGGTTTGCGACGGATATGAATGAGGAGAATTTAGAAAAATTGT
CAGAGTCTCGTTCGGGTCAGGCAGGCGGTCACATGGCAAAGGGGGGCAGGGCTGCATCAGTGCCAGAGACAGAACCCATCCCGGACGAGTTACGCTGCAGGCGGAATGACGGGAAGCAATGGCGATGCAGCGGCCGTGCATTGCCCGAGCGTTGTCTTTGCCAGAAGCACCATTTACAGCAGCTCGTGCGGGCGCAGCAG
GGGTTGGCGAGCACCAAGAGCACCAAGAGAGCTAAGAAACCGGAGGTCGTGGTCAAAGAGAAGAAGAAGAGGGGCAGGAAGCCCAGGGCGCAGTTAAATGAGGGTCAGGAGGGTTCCGAGAGTGCTAAGAATTTGAAGCCGCCAGGGAAGAAAAGAGGGCGGAAACCGAAGATACGCAAGCCGGAGGACGAGGGACAAGA
ATTCGCTGTGTCGGAACCTGAAAAGCGTGTTAAGAAGAGGAGAAGGAGGGCGAAGAATGGTGATCTTGATCACGAGCTTGTGAGGAAAAAAAAGAGAGCCAAGAGGACTGATGATGACATTGTACGAGATTCGACCGCAGAGCCTCCGCGTAGTGGGCGCCCGGGTTCGGCTGAGGCTCCTTTGCATTTCTCGAAGGTGT
TCGATAATGTAGAAGCTAAAGTGGAGGCCGGTGAACAGGTCGAGTTTAGTTTGCCAGAATTCGGTGCTCGGACTAAGAGAAAATACGTCAAGAAAGCACAGAATAAGCCGGTTCTGTCAAAGAAAGAGGATCCTGATTATAAACCTGTAAGAAGGGGGAGGAAACCAAATGGGAAAGTCCGTGCACGGGATTTGACTATG
GAACCTATCCACAGTGGGTGTCTTGATGTACCGAATGGATTGATGGAGGTTCCTGCACGTGCAGACGATGATTTTTCTAAGGTGTTTAGTAAGGTGGACACTTCGGGGCAGGTTGAGTTTAGTTTGTCGGATCTTGAGACAGTTCGGACCAAGAGAAAATATGTCAAGAAAATGAAGGACAAGACAGATCCGGAGCTTCA
AGTATGTTCTTTGTCTCAGGATATTGCTGAGGAAGAGAAAGCAAAGAATTCATCATCAGAGAGATTAAGTTTGATGTGCCACCAGTGTCAGCGAAATGACAAAGGAAAGGTGGTTTGGTGCTCCAAATGTAACAAACGTTACTGTATCTTCTGCACTAAAAGATGGTACCCCTTGCAAACTCATCAGGAGATTGCCAAGG
CATGTCCGTTTTGTCGGGGGAACTGCAACTGTAAGGCTTGTTTGCGGCGAGGAAGTCGTCTCAAGGTCCGCACAAAGCAGACAACCACAGCTGATATGGTTCATTACTCCCAGTACTCAATTTGCATGCTTCTTCCTATGCTGACTAAATTTCAAGAGGAGCAAATCAGGGAGCAAGTAGTGGAGGCTAGGATCCAGGGA
AAATCAACAGAAAACCTGGAGATTCCCAGGGCAAAAATCTCTTCAGAGTGACAACTGCAATACCTCTATTGTAGATTTTCACAGAAGCTGTCCAGATTGTTCGTATGATCTTTGTATTAGTTGTTGTAGAGAGCTTCGAGAAGGCTGTCAGCCTGGGGGTGATTCAGCAGAGTCATCCCAACAGCAGTACACAAAAAGAG
TTTATGCCCAGTCAGAGAATATGAAACAAAAAAAAAAAGCAAGGGAAAGCACAGGCCGGGAAGGTCGGGACGGTCACAATGCACAACCACTTAAACCATTGCCTGATTGGAAAGTTAACTGTGATGGTTCTATCCCATGCCCACCCAAAGAACGTGGTGGTTGTGGAAATAACTTGTTACAGTTAACGAGCATGTTTGAG
TCAAATTGGGTTGCAGAACTTAGGGAAAAAGCACAAAAAATTGCCGGTAGCTGTGAATTGCCAGAGGCATTAAGGGATTCCCAGCCATGTTCTTTGTGCTTCAAGGCTGATTCTCAGGACACGATTGAGCTTTCTGATAAGTTACGAAGATCATCCAACAGAAAGGATAGCAGTGACAACTATGTATATTCTCCAACTGT
TCAGGATATCAAATGTGAGAATCTTCAGCATTTTCAGAAACACTGGATTAGAGGTGAGCCTGTGATTGTACGGAATGTTTTAGATGATACATCAGGGTTGAGTTGGGAGCCAATGGTCATGTGGCGGGCTTTCAGGGAGACTACCAAGGGAAAATTTAGGGAAGAGACAAAAACAGTGAATGCTATTGATTGCCTGGATT
GGTTTACGGTTGAGATAAATATTCATCAATTTTTTAAAGGTTATACAGAGGGAAGGATGCACAAGAATCTGTGGCCTGAAATGTTGAAGTTGAAGGATTGGCCTCCCTCAAATTTCTTCGAGGAACGTTTACCACGACATGGTGCTGAATTTATCACTGCCTTACCTTTCCAGGAATATGCCCATCCTAAATCTGGGCTT
CTAAATCTTGCCACAAAGCTTCCAGTGAACTGCTTGAAACCTGATTTAGGGCCGAAAACATATATAGCTTATGGCGTCCGGGAAGAACTTGGTAGAGGAGATTCAGTGACAAAGTTGCACTGTGACATGTCTGATGCGGTCAATGTTTTAACACATACTGCAGACATCAAGTTCTCTCCTTCACAACAAAATGAGATAGA
GAAATTGAAAAAAAAATACAGAGCAATGGATTCTAAGGATCGTGTTAGCATAAATGAATCACCCTTGCCACGCAGAGCTGAAGCACGTAAAAAGCATGGTGAAATTGGGTGTATGGTGTCTGGAAATATTGTTGACAGGCTCGAAGAACAAGATTCGGTTGACACTGAAAGTAGGCCTGAGATTTTGGGAAAGATGGAAA
GCAAGGGAGTTGGTTCAAAGCCTTCAAAGATAGAAGCAAAGGTTGCCAGCAGAAATAATAACTCTGAATATGGTGGTGCACTTTGGGATATTTTTCGGAGAGAGGATGTACCAAAGTTACATGCATATCTCCAAAAACACTGGAATGAATTCAGGCATATTATGAATAAACCTCTCGAAGAAGTTGTTCATCCTATTCAT
GATCAGACAATTTACTTGAATGTAGAGCATAAAAGGAAGCTGAAAGAGGAATTTCAGGTAGAGCCATGGACATTTGAACAACATCTTGGAGAGGCAGTTTTTATTCCAGCTGGATGTCCACATCAAGTACGGAA
>TRINITY_DN114413_c0_g3_i6 from sample A1 / Example unspliced isoform:CACAAAACCGCGGGCACATGCGCATTCAAATCTAGGGCGCGAATTCGAAACTCAAATCAAGATAAGCACGCTATCTCTAGACGACGGCGCTGTATCGCGGCTTGCTCGAGAAGTTTCCGGTGAACAGGGCCAGTCTCACGGAGCCCGAGCAGGCAGACATACGAAAACCGGCCCACGCCGTCGTTTTGGCAAACAGCGGA
CCAGACTTGCCGGGAAATTGAAATCGGGGGGTTTATTTTTAGCGGGAAGTTTCAAAGCAGAACCCTTGACGAGAATTTACGGCTGCTGTGATTTAAAAAGGATTTTGCAGAGCTGCGGAGAGCAGGCGAATCGGGTGAGGGAAGTGGAAGCGGATTGAGGTTTGCGACGGATATGAATGAGGAGAATTTAGAAAAATTGT
CAGAGTCTCGTTCGGGTCAGGCAGGCGGTCACATGGCAAAGGGGGGCAGGGCTGCATCAGTGCCAGAGACAGAACCCATCCCGGACGAGTTACGCTGCAGGCGGAATGACGGGAAGCAATGGCGATGCAGCGGCCGTGCATTGCCCGAGCGTTGTCTTTGCCAGAAGCACCATTTACAGCAGCTCGTGCGGGCGCAGCAG
GGGTTGGCGAGCACCAAGAGCACCAAGAGAGCTAAGAAACCGGAGGTCGTGGTCAAAGAGAAGAAGAAGAGGGGCAGGAAGCCCAGGGCGCAGTTAAATGAGGGTCAGGAGGGTTCCGAGAGTGCTAAGAATTTGAAGCCGCCAGGGAAGAAAAGAGGGCGGAAACCGAAGATACGCAAGCCGGAGGACGAGGGACAAGA
ATTCGCTGTGTCGGAACCTGAAAAGCGTGTTAAGAAGAGGAGAAGGAGGGCGAAGAATGGTGATCTTGATCACGAGCTTGTGAGGAAAAAAAAGAGAGCCAAGAGGACTGATGATGACATTGTACGAGATTCGACCGCAGAGCCTCCGCGTAGTGGGCGCCCGGGTTCGGCTGAGGCTCCTTTGCATTTCTCGAAGGTGT
TCGATAATGTAGAAGCTAAAGTGGAGGCCGGTGAACAGGTCGAGTTTAGTTTGCCAGAATTCGGTGCTCGGACTAAGAGAAAATACGTCAAGAAAGCACAGAATAAGCCGGTTCTGTCAAAGAAAGAGGATCCTGATTATAAACCTGTAAGAAGGGGGAGGAAACCAAATGGGAAAGTCCGTGCACGGGATTTGACTATG
GAACCTATCCACAGTGGGTGTCTTGATGTACCGAATGGATTGATGGAGGTTCCTGCACGTGCAGACGATGATTTTTCTAAGGTGTTTAGTAAGGTGGACACTTCGGGGCAGGTTGAGTTTAGTTTGTCGGATCTTGAGACAGTTCGGACCAAGAGAAAATATGTCAAGAAAATGAAGGACAAGACAGATCCGGAGCTTCA
AGTATGTTCTTTGTCTCAGGATATTGCTGAGGAAGAGAAAGCAAAGAATTCATCATCAGAGAGATTAAGTTTGATGTGCCACCAGTGTCAGCGAAATGACAAAGGAAAGGTGGTTTGGTGCTCCAAATGTAACAAACGTTACTGTATCTTCTGCACTAAAAGATGGTACCCCTTGCAAACTCATCAGGAGATTGCCAAGG
CATGTCCGTTTTGTCGGGGGAACTGCAACTGTAAGGCTTGTTTGCGGCGAGGAAGTCGTCTCAAGGTCCGCACAAAGCAGACAACCACAGCTGATATGGTTCATTACTCCCAGTACTCAATTTGCATGCTTCTTCCTATGCTGACTAAATTTCAAGAGGAGCAAATCAGGGAGCAAGTAGTGGAGGCTAGGATCCAGGGA
AAATCAACAGAAAACCTGGAGATTCCCAGGGCAAAAATCTCTTCAGatgagcgcctttactggtactgtgttctgtttctatttttctcaactcaaatgtccaagtctgctatggaaacagggttatgatttcttaagatactgatcatgttgatagtgtgatggaaatactttatctgataaaattttctcatttttgc
cacAGTGACAACTGCAATACCTCTATTGTAGATTTTCACAGAAGCTGTCCAGATTGTTCGTATGATCTTTGTATTAGTTGTTGTAGAGAGCTTCGAGAAGGCTGTCAGCCTGGGGGTGATTCAGCAGAGTCATCCCAACAGCAGTACACAAAAAGAGTTTATGCCCAGTCAGAGAATATGAAACAAAAAAAAAAAGCAAG
GGAAAGCACAGGCCGGGAAGGTCGGGACGGTCACAATGCACAACCACTTAAACCATTGCCTGATTGGAAAGTTAACTGTGATGGTTCTATCCCATGCCCACCCAAAGAACGTGGTGGTTGTGGAAATAACTTGTTACAGTTAACGAGCATGTTTGAGTCAAATTGGGTTGCAGAACTTAGGGAAAAAGCACAAAAAATTG
CCGGTAGCTGTGAATTGCCAGAGGCATTAAGGGATTCCCAGCCATGTTCTTTGTGCTTCAAGGCTGATTCTCAGGACACGATTGAGCTTTCTGATAAGTTACGAAGATCATCCAACAGAAAGGATAGCAGTGACAACTATGTATATTCTCCAACTGTTCAGGATATCAAATGTGAGAATCTTCAGCATTTTCAGAAACAC
TGGATTAGAGGTGAGCCTGTGATTGTACGGAATGTTTTAGATGATACATCAGGGTTGAGTTGGGAGCCAATGGTCATGTGGCGGGCTTTCAGGGAGACTACCAAGGGAAAATTTAGGGAAGAGACAAAAACAGTGAATGCTATTGATTGCCTGGATTGGTTTACGGTTGAGATAAATATTCATCAATTTTTTAAAGGTTA
TACAGAGGGAAGGATGCACAAGAATCTGTGGCCTGAAATGTTGAAGTTGAAGGATTGGCCTCCCTCAAATTTCTTCGAGGAACGTTTACCACGACATGGTGCTGAATTTATCACTGCCTTACCTTTCCAGGAATATGCCCATCCTAAATCTGGGCTTCTAAATCTTGCCACAAAGCTTCCAGTGAACTGCTTGAAACCTG
ATTTAGGGCCGAAAACATATATAGCTTATGGCGTCCGGGAAGAACTTGGTAGAGGAGATTCAGTGACAAAGTTGCACTGTGACATGTCTGATGCGGTCAATGTTTTAACACATACTGCAGACATCAAGTTCTCTCCTTCACAACAAAATGAGATAGAGAAATTGAAAAAAAAATACAGAGCAATGGATTCTAAGGATCGT
GTTAGCATAAATGAATCACCCTTGCCACGCAGAGCTGAAGCACGTAAAAAGCATGGTGAAATTGGGTGTATGGTGTCTGGAAATATTGTTGACAGGCTCGAAGAACAAGATTCGGTTGACACTGAAAGTAGGCCTGAGATTTTGGGAAAGATGGAAAGCAAGGGAGTTGGTTCAAAGCCTTCAAAGATAGAAGCAAAGGT
TGCCAGCAGAAATAATAACTCTGAATATGGTGGTGCACTTTGGGATATTTTTCGGAGAGAGGATGTACCAAAGTTACATGCATATCTCCAAAAACACTGGAATGAATTCAGGCATATTATGAATAAACCTCTCGAAGAAGTTGTTCATCCTATTCATGATCAGACAATTTACTTGAATGTAGAGCATAAAAGGAAGCTGA
AAGAGGAATTTCAGGTAGAGCCATGGACATTTGAACAACATCTTGGAGAGGCAGTTTTTATTCCAGCTGGATGTCCACATCAAGTACGGAA
Intron 3 GTTCATTAAA ... AAAATTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.66 | 161.6 | 30 | 36.2 |
| A2 | 27.81 | 105.8 | 29 | 42.4 |
| A3 | 20.04 | 146.9 | 29 | 32.8 |
| A4 | 25.68 | 143.5 | 29 | 59.3 |
| A5 | 25.94 | 50.9 | 7 | 23.9 |
| A6 | 15.8 | 25.4 | 2 | 6.3 |
| A7 | 22.31 | 193.6 | 35 | 69 |
| A8 | 22.39 | 101.3 | 15 | 39.8 |
| A9 | 20.1 | 139.4 | 20 | 41.8 |
| A10 | 19.17 | 184.2 | 26 | 52.7 |
>TRINITY_DN114413_c0_g3_i9 from sample A1 / Example spliced isoformCACAAAACCGCGGGCACATGCGCATTCAAATCTAGGGCGCGAATTCGAAACTCAAATCAAGATAAGCACGCTATCTCTAGACGACGGCGCTGTATCGCGGCTTGCTCGAGAAGTTTCCGGTGAACAGGGCCAGTCTCACGGAGCCCGAGCAGGCAGACATACGAAAACCGGCCCACGCCGTCGTTTTGGCAAACAGCGGA
CCAGACTTGCCGGGAAATTGAAATCGGGGGGTTTATTTTTAGCGGGAAGTTTCAAAGCAGAACCCTTGACGAGAATTTACGGCTGCTGTGATTTAAAAAGGATTTTGCAGAGCTGCGGAGAGCAGGCGAATCGGGTGAGGGAAGTGGAAGCGGATTGAGGTTTGCGACGGATATGAATGAGGAGAATTTAGAAAAATTGT
CAGAGTCTCGTTCGGGTCAGGCAGGCGGTCACATGGCAAAGGGGGGCAGGGCTGCATCAGTGCCAGAGACAGAACCCATCCCGGACGAGTTACGCTGCAGGCGGAATGACGGGAAGCAATGGCGATGCAGCGGCCGTGCATTGCCCGAGCGTTGTCTTTGCCAGAAGCACCATTTACAGCAGCTCGTGCGGGCGCAGCAG
GGGTTGGCGAGCACCAAGAGCACCAAGAGAGCTAAGAAACCGGAGGTCGTGGTCAAAGAGAAGAAGAAGAGGGGCAGGAAGCCCAGGGCGCAGTTAAATGAGGGTCAGGAGGGTTCCGAGAGTGCTAAGAATTTGAAGCCGCCAGGGAAGAAAAGAGGGCGGAAACCGAAGATACGCAAGCCGGAGGACGAGGGACAAGA
ATTCGCTGTGTCGGAACCTGAAAAGCGTGTTAAGAAGAGGAGAAGGAGGGCGAAGAATGGTGATCTTGATCACGAGCTTGTGAGGAAAAAAAAGAGAGCCAAGAGGACTGATGATGACATTGTACGAGATTCGACCGCAGAGCCTCCGCGTAGTGGGCGCCCGGGTTCGGCTGAGGCTCCTTTGCATTTCTCGAAGGTGT
TCGATAATGTAGAAGCTAAAGTGGAGGCCGGTGAACAGGTCGAGTTTAGTTTGCCAGAATTCGGTGCTCGGACTAAGAGAAAATACGTCAAGAAAGCACAGAATAAGCCGGTTCTGTCAAAGAAAGAGGATCCTGATTATAAACCTGTAAGAAGGGGGAGGAAACCAAATGGGAAAGTCCGTGCACGGGATTTGACTATG
GAACCTATCCACAGTGGGTGTCTTGATGTACCGAATGGATTGATGGAGGTTCCTGCACGTGCAGACGATGATTTTTCTAAGGTGTTTAGTAAGGTGGACACTTCGGGGCAGGTTGAGTTTAGTTTGTCGGATCTTGAGACAGTTCGGACCAAGAGAAAATATGTCAAGAAAATGAAGGACAAGACAGATCCGGAGCTTCA
AGTATGTTCTTTGTCTCAGGATATTGCTGAGGAAGAGAAAGCAAAGAATTCATCATCAGAGAGATTAAGTTTGATGTGCCACCAGTGTCAGCGAAATGACAAAGGAAAGGTGGTTTGGTGCTCCAAATGTAACAAACGTTACTGTATCTTCTGCACTAAAAGATGGTACCCCTTGCAAACTCATCAGGAGATTGCCAAGG
CATGTCCGTTTTGTCGGGGGAACTGCAACTGTAAGGCTTGTTTGCGGCGAGGAAGTCGTCTCAAGGTCCGCACAAAGCAGACAACCACAGCTGATATGGTTCATTACTCCCAGTACTCAATTTGCATGCTTCTTCCTATGCTGACTAAATTTCAAGAGGAGCAAATCAGGGAGCAAGTAGTGGAGGCTAGGATCCAGGGA
AAATCAACAGAAAACCTGGAGATTCCCAGGGCAAAAATCTCTTCAGATGAGCGCCTTTACTGTGACAACTGCAATACCTCTATTGTAGATTTTCACAGAAGCTGTCCAGATTGTTCGTATGATCTTTGTATTAGTTGTTGTAGAGAGCTTCGAGAAGGCTGTCAGCCTGGGGGTGATTCAGCAGAGTCATCCCAACAGCA
GTACACAAAAAGAGTTTATGCCCAGTCAGAGAATATGAAACAAAAAAAAAAAGCAAGGGAAAGCACAGGCCGGGAAGGTCGGGACGGTCACAATGCACAACCACTTAAACCATTGCCTGATTGGAAAGTTAACTGTGATGGTTCTATCCCATGCCCACCCAAAGAACGTGGTGGTTGTGGAAATAACTTGTTACAGTTAA
CGAGCATGTTTGAGTCAAATTGGGTTGCAGAACTTAGGGAAAAAGCACAAAAAATTGCCGGTAGCTGTGAATTGCCAGAGGCATTAAGGGATTCCCAGCCATGTTCTTTGTGCTTCAAGGCTGATTCTCAGGACACGATTGAGCTTTCTGATAAGTTACGAAGATCATCCAACAGAAAGGATAGCAGTGACAACTATGTA
TATTCTCCAACTGTTCAGGATATCAAATGTGAGAATCTTCAGCATTTTCAGAAACACTGGATTAGAGGTGAGCCTGTGATTGTACGGAATGTTTTAGATGATACATCAGGGTTGAGTTGGGAGCCAATGGTCATGTGGCGGGCTTTCAGGGAGACTACCAAGGGAAAATTTAGGGAAGAGACAAAAACAGTGAATGCTAT
TGATTGCCTGGATTGGTTTACGGTTGAGATAAATATTCATCAATTTTTTAAAGGTTATACAGAGGGAAGGATGCACAAGAATCTGTGGCCTGAAATGTTGAAGTTGAAGGATTGGCCTCCCTCAAATTTCTTCGAGGAACGTTTACCACGACATGGTGCTGAATTTATCACTGCCTTACCTTTCCAGGAATATGCCCATC
CTAAATCTGGGCTTCTAAATCTTGCCACAAAGCTTCCAGTGAACTGCTTGAAACCTGATTTAGGGCCGAAAACATATATAGCTTATGGCGTCCGGGAAGAACTTGGTAGAGGAGATTCAGTGACAAAGTTGCACTGTGACATGTCTGATGCGGTAAGCATTGCTTTCTTGCAAATATGATCTTACTATATTTTGCTTTTG
ATAGTGCAAATTGGCAACGTATAGTTTTGTGCATCCTTGTGTGTAGGAGTGGTATCAAA
>TRINITY_DN114413_c0_g3_i5 from sample A1 / Example unspliced isoform:TGACAACTGCAATACCTCTATTGTAGATTTTCACAGAAGCTGTCCAGATTGTTCGTATGATCTTTGTATTAGTTGTTGTAGAGAGCTTCGAGAAGGCTGTCAGCCTGGGGGTGATTCAGCAGAGTCATCCCAACAGCAGTACACAAAAAGAGTTTATGCCCAGTCAGAGAATATGAAACAAAAAAAAAAAGCAAGGGAAA
GCACAGGCCGGGAAGGTCGGGACGGTCACAATGCACAACCACTTAAACCATTGCCTGATTGGAAAGTTAACTGTGATGGTTCTATCCCATGCCCACCCAAAGAACGTGGTGGTTGTGGAAATAACTTGTTACAGTTAACGAGCATGTTTGAGTCAAATTGGGTTGCAGAACTTAGGGAAAAAGCACAAAAAATTGCCGGT
AGCTGTGAATTGCCAGAGGCATTAAGGGATTCCCAGCCATGTTCTTTGTGCTTCAAGGCTGATTCTCAGGACACGATTGAGCTTTCTGATAAGTTACGAAGATCATCCAACAGAAAGGATAGCAGTGACAACTATGTATATTCTCCAACTGTTCAGGATATCAAATGTGAGAATCTTCAGCATTTTCAGAAACACTGGAT
TAGAGGTGAGCCTGTGATTGTACGGAATGTTTTAGATGATACATCAGGGTTGAGTTGGGAGCCAATGGTCATGTGGCGGGCTTTCAGGGAGACTACCAAGGGAAAATTTAGGGAAGAGACAAAAACAGTGAATGCTATTGATTGCCTGGATTGGTTTACGgttcattaaagcagcctcagcgatagagcgtgaaaagaat
gtttcttgacaatgttagggctgttggaagggttacttctatgcaagaaattcaagtattacgaggatgataagctattaaattaacatgcttgtgaaatggacaattttgttgggagagagactacaatagctcaattgcaattgatttgaataattacaagttcctaaaattccagGTTGAGATAAATATTCATCAAT
TTTTTAAAGGTTATACAGAGGGAAGGATGCACAAGAATCTGTGGCCTGAAATGTTGAAGTTGAAGGATTGGCCTCCCTCAAATTTCTTCGAGGAACGTTTACCACGACATGGTGCTGAATTTATCACTGCCTTACCTTTCCAGGAATATGCCCATCCTAAATCTGGGCTTCTAAATCTTGCCACAAAGCTTCCAGTGAAC
TGCTTGAAACCTGATTTAGGGCCGAAAACATATATAGCTTATGGCGTCCGGGAAGAACTTGGTAGAGGAGATTCAGTGACAAAGTTGCACTGTGACATGTCTGATGCGGTCAATGTTTTAACACATACTGCAGACATCAAGTTCTCTCCTTCACAACAAAATGAGATAGAGAAATTGAAAAAAAAATACAGAGCAATGGA
TTCTAAGGATCGTGTTAGCATAAATGAATCACCCTTGCCACGCAGAGCTGAAGCACGTAAAAAGCATGGTGAAATTGGGTGTATGGTGTCTGGAAATATTGTTGACAGGCTCGAAGAACAAGATTCGGTTGACACTGAAAGTAGGCCTGAGATTTTGGGAAAGATGGAAAGCAAGGGAGTTGGTTCAAAGCCTTCAAAGA
TAGAAGCAAAGGTTGCCAGCAGAAATAATAACTCTGAATATGGTGGTGCACTTTGGGATATTTTTCGGAGAGAGGATGTACCAAAGTTACATGCATATCTCCAAAAACACTGGAATGAATTCAGGCATATTATGAATAAACCTCTCGAAGAAGTTGTTCATCCTATTCATGATCAGACAATTTACTTGAATGTAGAGCAT
AAAAGGAAGCTGAAAGAGGAATTTCAGGTAGAGCCATGGACATTTGAACAACATCTTGGAGAGGCAGTTTTTATTCCAGCTGGATGTCCACATCAAGTACGGAA