NA ----> NA
Intron 1 GTATAAATCT ... GTCTTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.7 | 18 | 30 | 28 |
| A2 | 59.63 | 22 | 32 | 33 |
| A3 | 58.73 | 13 | 17 | 20 |
| A4 | 71.83 | 10 | 23 | 28 |
| A5 | 46.67 | 4 | 4 | 3 |
| A6 | 62.01 | 34 | 46 | 65 |
| A7 | 53.29 | 71 | 77 | 85 |
| A8 | 62.96 | 90 | 132 | 174 |
| A9 | 46.79 | 83 | 71 | 75 |
| A10 | 52.48 | 48 | 64 | 42 |
>TRINITY_DN132331_c0_g1_i3 from sample A1 / Example spliced isoformGGGTATTGTATTTTCCCGGTCTTTAATGTGTTTTTTTTAAGGACTACTGCTGTCAACCACTTCTCGCTCTATTTTATGAAATGCGATTTGGAGAATGGCTAGAATATTTAAAATAATAATAATAATGTTGTGATTATAGAACATAAATCCCAAACCCCAAATGCATGTGAGCTTAACGACTGACTGAAACAGGGGCAGCT
GGTAATGGTAGGAGAAAGAGGAGGTGAAATGGGAGAAATGAGCAATATTCCTTTTTCAATGGGAATGGAAGCTCAGACTCGCAGCTGCCCTAGTACGCCGATGATTCCGATATTTGTAGACACTAATTTGGACACCCATCTGGCCCTCTCAGCTTCTCCCTCGGAGACTATTGATGATCTTAGAGCAAAAATCAGGAAAG
GGCATTTGTCATGCTTCCCTCATCTTGGAGAAATTGATGTTGGTGCTTTGATGGTCAAACGCAAATCCTTGTTCTATCGTCTTGTTGATTCAATGCTTGTTGGAAGTGCTTTTGATGGGTTAAAAGGGACTAGGTTTCTTTTAGTTGAAATATCTCAGCCAGATTTACATATTGATCAAGGAGGCCCAAGAGCAAACATA
ACAAATCTTGAGAATAATAGCCTGTTGAAGAAGCATCATTCAAATGGACTGCAAGCTGATGACAAAAAGTTGCCAAATAATGGTTCAGTAGAAGCAGTCACCAAGAGCATGTCAAATTATATGATTTGCCAGAAGCCTTCTTTACTTGCAGGTGGAGTGGATGCAACTCAGGCTTGTATGGTGGGCTTGCACCATGGCAA
ACTTTTAACTGGGGATGATTACAAGGACTGCATCATGGAAGATCATAATCCACAGCCATTTCTGAATCCAGAACTTCCAGTGCGAACTGGTGAAAAGATCGAGACAACAAATTCGCCTCCTTTATTATTAAATGGCACTGATGGGGAAACTGGAATTCTAAATACCTCTCAAAGTGGGAATGTTCAGAGGCATTCTAATG
AGCAATCTAATCAGACTGTGCCTGATTTACAAAATTGGAGATCAGTAAAACAGAAAAAGGGTAAATCAGTTTTTCAGGGTAGTCAAGTCCTGGAAGATTGTGGTCAGCTAAGCAAGAGCATGCAATTGCTCGATGAAAATAAGGAGAGGAATGGTGTTGCTATAAGAAACAGAGGGCTTTTTAAGGAATCCAAAATTTTG
GGAAGAGAAGATGGAGAACATGAAATACCTACAACTATTACAAATGGTGAAGTTAGGACATTTTTATATGAGAAATCAGATGGAATGGGGTCTGATTTACAAGCTGGAGAATCACCAAATCTTAAAAACAAGGCCAAATCTGCTGAGGAGTGTAGCCAAGTCCAGAAGGCTTGTGGCCAACTGAGCAATAACATACAGTG
CCAAACCACAATCACAGGAAGAGAAGAAAATGCACTGAATAGTGAAGGGTTTCCAGAGGAATGTGAAATTCTGGGTGGAAGAGAGGGAAATTTTGGAATATCAACGACAAATAAAAAAGTTGGAAGTGAGAGGCTGTTTGATGACAACTCCAATGGAAATGTCTCTGACATACAAGCTGAGATAGAGACAAAATGGAAAA
AGGGTAAATTAGTTGCAGAGTGCAGCCAAGTCAAGGAAGGCTATGGTCAGCTGAGCAATGACATAGATTCCAAAGATTTGGTTGCAGCAAGAGTTGAAAAGGTCATGATAAATGATGCATTTACAAAGGAATCCAGGTCTTCAAGCATTGGTGATGAAGTATTGCCTGCAAATGGCGGGAAGAGAAGTAAGAGGAAAAGG
AAGGAACGGTGTGATCTCAATGAAGACTCAACTGGATGTGGCTTATCACAAATCCAGGAAAAGAATAAAAGGAAGAGGACGACAATCGAAGGAAACAATATTGAGTGCTCATCTAAGCAGCTTTTGGAGAACTTTAAAACTCCTAGTACTGACTTTCTTTCAGCACAGATAAGCAAATCGGAGAATGCGAATGTTTCAAA
GTCTGTAAAGGAGGATGGTATTACAGCTTTAACAAAGAGTGCCATGACTTTACCTGGAAGTAATTGTAATCCTAGTCCAGACTTTGAGGATGAGGACATAGTATGTACACAATTGAGTACAGGAGAAAAGCATGAAACTAGTTCAAGGAATTTTGATGATGAATACCCACCAAACACAGCTGAGAAGGAGTCAAAGGACT
TGCAAAGAAAATCTGATGATGCCAGGGAATGTGTTATAGAAGAAAAGGGCAATCCAAAGATTTCCATTGAAGTAGACTCACCAAAAACAGCTGGGAAGAAATCAAAGGACTTGCAAAGCAAAGCGGATGATGCTAAGAAATATGATATAGAGAAACAGGTCAAACCTAGAAGAAAAATGTCATCCAAGCATGCTATTTTG
GATTATGAGCAAGAAGCTTCTGCGAAAGATGTGAATGGTGAAACTCAAATTACTGAGCACAATCCTCTTCTAAAAAGTGAATGTATCACTACAGAGGAAACACAAGGGGTTTCAATTGCATTGAAGGAAAATGGACAGCGAAAGGATCCCAAGAATGTATCTGTCAAATATGTAGATAGCTCAACTCATATGGATGGTAA
TCAGCCTTGTAGTATCTCAGGAAAGAAGAAAAGCAAACGGTCAAGGAATGATTTCTTGAGGCCTGATAATCCTGAAAGAATTACCAAAGAGTGGGTACCAAAAGATGATCTAGTTATTAAATCCGGAAAATTTGAGGGAGACGAAAGCACAACAGATGCCGGAAAGGAAAAAAGAACACATACTTCAGGTGAGAATGGAG
GAATTGCATATTTGAGTACAGACATTCTAGAAAAGAATGCTATCATGGATCCAAAAGCAAGAGGAATGGCACCTAAGGCTATAATCAATAACGAGGCTTACTCTGACAGTGATATTGGAATGGAGAATAGAAATAACGAGAAATCTGACAGTGGGAAGAAGAAGGTCAAACTGTCAAAAACAAGCCCGTCAAAAGAGAGC
CAAGAAAGGTGTGTGGGCATTGACAATAGACTGATAAATGCAGTAGTTGCAAAAAGTGGTAACTCAAGCCAACATGCAAAGGATGAAGTGAAGAAACCAAAGGACACTCATGTTTCTTCATCAGACAAAAAACAAGATATTGACAGTGGGAGCCTAAGATGTCAAAGCACAGCTGAAAACTCTCTTCACAAATCAACACA
CATAGCACAATTGGACACTATTGACACGTCTTATACAAGGAAAGCTTCAAAAGAACGTCAATGCATTGTTAATTCAACTGAAAAGATCCAGCCTGGAAATCGAAAGGTTGCTTCTGAAAGAAACGTTGTTGAAAATTCATGTCATAAATTAAAGCAGGCTAAGAGCTCTGCTACTACAGATGGTTTTGATAGAATTCAAT
CTTCAAAAGAGAAGCAAGATGATGATTTTGAAACTAAGGAGCCTCAACATAAAGCTGAAGATGGGGTTTGTAACAGAAACAGCACTGCTGACAGTTGTCATACACAAAAGAGAACAACAAGCTTTGTTACTGACAATGTCTACAAGGATAGACAGCCTTTGGGAGAGCAACATGGAAATAGTGGTGTATCTAGAAAAATT
CGGACACCAAAAAAAAATCATGATGGATCTAGTGCGAACAAGACAAAAAATAAAGACAATTTTAGTTGTCAACAGAAAAAGGTTTTAGAAAAGCCCAAGGGTGGTAAGCATTGTACGAAGAGTCTGCAGTCACTTTTTAAGAGTGCCAATGATGAGAGTACTGAGGAAGAAAATGAAACTGATTCCTCTTCGGCAAACTC
ATCTTCAGAGAGTTTTTCTGGTAATTCTTCAGATTCCCTTGATTCAGATGGAGGAAGCAGAGAGAAGGTTTCAATAAAATCTCAGGCCGATAGAGGCCCTTCAATAAGTGGTCCACTGTTATCAACTGCTACTGGAAGTAAACAGGACACTGGAGGAAGTGGTCCCATTCAATCCAGATTTGTTCATCTTCTTGCAAAGA
AGACTGGTCTGGGTGAACTCTTTAAGATTGCTAGTGCCCAGAAGAAGGCCGAGTCTGAAAACTTCAGTGGTCAGTTTGTGTCTACTGAGTCTCCATCCACTAACATGGTTTTGGAGACACAAGAGAGCCAGGTTGATCATACTGCACTTGATAATATAGAAACACCTTCACTTCCTGTTACAGCAGTTAATACAAAGGGG
ACTGGTAAAGTCTTGAATAACAAAGCACCAAAAGCTAATTCTGCATCAAGATCTTGTATAGAAAGCACCCCAAAAGCCTCTGGAAAGTCCTATTCTCCTCTAGTTGAAAAGCCTACTGATAAATCAGTTCAGTTAGAAGCTTCTGGCAAAGTTACTCCACAAATGCAGCAGAGTGGCAGACGGGTTGAGCCACGGACTGG
GAGTAATAACAAAAGAAGAACTGCAAGTAAGCAGTAGTAGGAACTCAAGGTAATGCCATTGTGCTGGCATTACCTTGTGACTGGTAGCAAGGGATACTCAGTTGAGGATGAGCCTTGATCTAAAGTCAAGGCCAAGCCGTTAGGGAGGTTGACAAAACTGGAACAATAAATTGACTACATAATTACAGCATGGAGAAATT
ACTGCCACAAGTAGAAAGGGAGAAGATAAACTGAACTGTCCTACACACAATAAGCCCAGGAATATTTGAGGATCTCCAGTATAAGGAGCATTTATATGAGCATTGGATCATGTAGAATATGGAGTACTGGAAAGTGAGGTAACTTCTGCAGTTATGGGATACACTGTTCTGTTTTGAAGAGATTTTGGTCTGTACTCAGT
GGGTGAAGCGTAATGCATGATTTCAAGGTTATTTGATGGCGAGTTTTTCTGTTTTAAGCAATTTTACAGGTGATCAAGATAGTTTGATTCTTGATGTTTTAACATTTCTATATATACATGTTTATTATTTTTTCTCCCAGGTACTCTTTAAGGAATACTAAGTAGTTTTGGTGTGAGCACAACATGAGATTGAAATGTTC
GATTGTAATATGGCTTTACCATAGCAATTTTGGCTGCATTGTCTTCAAATGAGTTAACAATCACAGATCAGTTTTTATTATATTTCATGATTTATGAGCAGT
>TRINITY_DN132331_c0_g1_i2 from sample A1 / Example unspliced isoform:GGGTATTGTATTTTCCCGGTCTTTAATGTGTTTTTTTTAAGGACTACTGCTGTCAACCACTTCTCGCTCTATTTTATGAAATGCGATTTGGAGAATGGCTAGAATATTTAAAATAATAATAATAATGTTGTGATTATAGAACATAAATCCCAAACCCCAAATGCATGTGAGCTTAACGACTGACTGAAACAGGGGCAGCT
GGTAATGGTAGGAGAAAGAGGAGGTGAAATGGGAGAAATGAGCAATATTCCTTTTTCAATGGGAATGGAAGCTCAGACTCGCAGCTGCCCTAGTACGCCGATGATTCCGATATTTGTAGACACTAATTTGGACACCCATCTGGCCCTCTCAGCTTCTCCCTCGGAGACTATTGATGATCTTAGAGCAAAAATCAGGAAAG
GGCATTTGTCATGCTTCCCTCATCTTGGAGAAATTGATGTTGGTGCTTTGATGGTCAAACGCAAATCCTTGTTCTATCGTCTTGTTGATTCAATGCTTGTTGGAAGTGCTTTTGATGGGTTAAAAGGGACTAGGTTTCTTTTAGTTGAAATATCTCAGCCAGATTTACATATTGATCAAGGAGGCCCAAGAGCAAACATA
ACAAATCTTGAGAATAATAGCCTGTTGAAGAAGCATCATTCAAATGGACTGCAAGCTGATGACAAAAAGTTGCCAAATAATGGTTCAGTAGAAGCAGTCACCAAGAGCATGTCAAATTATATGATTTGCCAGAAGCCTTCTTTACTTGCAGGTGGAGTGGATGCAACTCAGGCTTGTATGGTGGGCTTGCACCATGGCAA
ACTTTTAACTGGGGATGATTACAAGGACTGCATCATGGAAGATCATAATCCACAGCCATTTCTGAATCCAGAACTTCCAGTGCGAACTGGTGAAAAGATCGAGACAACAAATTCGCCTCCTTTATTATTAAATGGCACTGATGGGGAAACTGGAATTCTAAATACCTCTCAAAGTGGGAATGTTCAGAGGCATTCTAATG
AGCAATCTAATCAGACTGTGCCTGATTTACAAAATTGGAGATCAGTAAAACAGAAAAAGGGTAAATCAGTTTTTCAGGGTAGTCAAGTCCTGGAAGATTGTGGTCAGCTAAGCAAGAGCATGCAATTGCTCGATGAAAATAAGGAGAGGAATGGTGTTGCTATAAGAAACAGAGGGCTTTTTAAGGAATCCAAAATTTTG
GGAAGAGAAGATGGAGAACATGAAATACCTACAACTATTACAAATGGTGAAGTTAGGACATTTTTATATGAGAAATCAGATGGAATGGGGTCTGATTTACAAGCTGGAGAATCACCAAATCTTAAAAACAAGGCCAAATCTGCTGAGGAGTGTAGCCAAGTCCAGAAGGCTTGTGGCCAACTGAGCAATAACATACAGTG
CCAAACCACAATCACAGGAAGAGAAGAAAATGCACTGAATAGTGAAGGGTTTCCAGAGGAATGTGAAATTCTGGGTGGAAGAGAGGGAAATTTTGGAATATCAACGACAAATAAAAAAGTTGGAAGTGAGAGGCTGTTTGATGACAACTCCAATGGAAATGTCTCTGACATACAAGCTGAGATAGAGACAAAATGGAAAA
AGGGTAAATTAGTTGCAGAGTGCAGCCAAGTCAAGGAAGGCTATGGTCAGCTGAGCAATGACATAGATTCCAAAGATTTGGTTGCAGCAAGAGTTGAAAAGGTCATGATAAATGATGCATTTACAAAGGAATCCAGGTCTTCAAGCATTGGTGATGAAGTATTGCCTGCAAATGGCGGGAAGAGAAGTAAGAGGAAAAGG
AAGGAACGGTGTGATCTCAATGAAGACTCAACTGGATGTGGCTTATCACAAATCCAGGAAAAGAATAAAAGGAAGAGGACGACAATCGAAGGAAACAATATTGAGTGCTCATCTAAGCAGCTTTTGGAGAACTTTAAAACTCCTAGTACTGACTTTCTTTCAGCACAGATAAGCAAATCGGAGAATGCGAATGTTTCAAA
GTCTGTAAAGGAGGATGGTATTACAGCTTTAACAAAGAGTGCCATGACTTTACCTGGAAGTAATTGTAATCCTAGTCCAGACTTTGAGGATGAGGACATAGTATGTACACAATTGAGTACAGGAGAAAAGCATGAAACTAGTTCAAGGAATTTTGATGATGAATACCCACCAAACACAGCTGAGAAGGAGTCAAAGGACT
TGCAAAGAAAATCTGATGATGCCAGGGAATGTGTTATAGAAGAAAAGGGCAATCCAAAGATTTCCATTGAAGTAGACTCACCAAAAACAGCTGGGAAGAAATCAAAGGACTTGCAAAGCAAAGCGGATGATGCTAAGAAATATGATATAGAGAAACAGGTCAAACCTAGAAGAAAAATGTCATCCAAGCATGCTATTTTG
GATTATGAGCAAGAAGCTTCTGCGAAAGATGTGAATGGTGAAACTCAAATTACTGAGCACAATCCTCTTCTAAAAAGTGAATGTATCACTACAGAGGAAACACAAGGGGTTTCAATTGCATTGAAGGAAAATGGACAGCGAAAGGATCCCAAGAATGTATCTGTCAAATATGTAGATAGCTCAACTCATATGGATGGTAA
TCAGCCTTGTAGTATCTCAGGAAAGAAGAAAAGCAAACGGTCAAGGAATGATTTCTTGAGGCCTGATAATCCTGAAAGAATTACCAAAGAGTGGGTACCAAAAGATGATCTAGTTATTAAATCCGGAAAATTTGAGGGAGACGAAAGCACAACAGATGCCGGAAAGGAAAAAAGAACACATACTTCAGGTGAGAATGGAG
GAATTGCATATTTGAGTACAGACATTCTAGAAAAGAATGCTATCATGGATCCAAAAGCAAGAGGAATGGCACCTAAGGCTATAATCAATAACGAGGCTTACTCTGACAGTGATATTGGAATGGAGAATAGAAATAACGAGAAATCTGACAGTGGGAAGAAGAAGGTCAAACTGTCAAAAACAAGCCCGTCAAAAGAGAGC
CAAGAAAGGTGTGTGGGCATTGACAATAGACTGATAAATGCAGTAATTGCAAAAAGTGGTAACTCAAAGGATAAAGTGAAGAAACCAAAGGACACTCATGTTTCTTCATCAGACAAAAAACAAGATATTGACAGTGGGAGCCTAAGATGTCAAAGCACAGCTGAAAACTCTCTTCACAAATCAACACACATAGCACAATT
GGACACTATTGACACGTCTTATACAAGGAAAGCTTCAAAAGAACGTCAATGCATTGTTAATTCAACTGAAAAGATCCAGCCTGGAAATCGAAAGGTTGCTTCTGAAAGAAACGTTGTTGAAAATTCATGTCATAAATTAAAGCAGGCTAAGAGCTCTGCTACTACAGATGGTTTTGATAGAATTCAATCTTCAAAAGAGA
AGCAAGATGATGATTTTGAAACTAAGGAGCCTCAACATAAAGCTGAAGATGGGGTTTGTAACAGAAACAGCACTGCTGACAGTTGTCATACACAAAAGAGAACAACAAGCTTTGTTACTGACAATGTCTACAAGGATAGACAGCCTTTGGGAGAGCAACATGGAAATAGTGGTGTATCTAGAAAAATTCGGACACCAAAA
AAAAATCATGATGGATCTAGTGCGAACAAGACAAAAAATAAAGACAATTTTAGTTGTCAACAGAAAAAGGTTTTAGAAAAGCCCAAGGGTGGTAAGCATTGTACGAAGAGTCTGCAGTCACTTTTTAAGAGTGCCAATGATGAGAGTACTGAGGAAGAAAATGAAACTGATTCCTCTTCGGCAAACTCATCTTCAGAGAG
TTTTTCTGGTAATTCTTCAGATTCCCTTGATTCAGATGGAGGAAGCAGAGAGAAGGTTTCAATAAAATCTCAGGCCGATAGAGGCCCTTCAATAAGTGGTCCACTGTTATCAACTGCTACTGGAAGTAAACAGGACACTGGAGGAAGTGGTCCCATTCAATCCAGATTTGTTCATCTTCTTGCAAAGAAGACTGGTCTGG
GTGAACTCTTTAAGATTGCTAGTGCCCAGAAGAAGGCCGAGTCTGAAAACTTCAGTGGTCAGTTTGTGTCTACTGAGTCTCCATCCACTAACATGGTTTTGGAGACACAAGAGAGCCAGGTTGATCATACTGCACTTGATAATATAGAAACACCTTCACTTCCTGTTACAGCAGTTAATACAAAGGGGACTGGTAAAGTC
TTGAATAACAAAGCACCAAAAGCTAATTCTGCATCAAGATCTTGTATAGAAAGCACCCCAAAAGCCTCTGGAAAGTCCTATTCTCCTCTAGTTGAAAAGCCTACTGATAAATCAGTTCAGTTAGAAGCTTCTGGCAAAGTTACTCCACAAATGCAGCAGAGTGGCAGACGGGTTGAGCCACGGACTGGGAGTAATAACAA
AAGAAGAACTGCAAGTAAGCAGTAGTAGGAACTCAAGGTAATGCCATTGTGCTGGCATTACCTTGTGACTGGTAGCAAGgtataaatctataacctgtcggcgaggaatttttgctttgtaattgacgtgaagtaatttgaagttgactaattatgcagcacatactgttctaaggttgtcagtcttagcagGGATACTC
AGTTGAGGATGAGCCTTGATCTAAAGTCAAGGCCAAGCCGTTAGGGAGGTTGACAAAACTGGAACAATAAATTGACTACATAATTACAGCATGGAGAAATTACTGCCACAAGTAGAAAGGGAGAAGATAAACTGAACTGTCCTACACACAATAAGCCCAGGAATATTTGAGGATCTCCAGTATAAGGAGCATTTATATGA
GCATTGGATCATGTAGAATATGGAGTACTGGAAAGTGAGGTAACTTCTGCAGTTATGGGATACACTGTTCTGTTTTGAAGAGATTTTGGTCTGTACTCAGTGGGTGAAGCGTAATGCATGATTTCAAGGTTATTTGATGGCGAGTTTTTCTGTTTTAAGCAATTTTACAGGTGATCAAGATAGTTTGATTCTTGATGTTT
TAACATTTCTATATATACATGTTTATTATTTTTTCTCCCAGGTACTCTTTAAGGAATACTAAGTAGTTTTGGTGTGAGCACAACATGAGATTGAAATGTTCGATTGTAATATGGCTTTACCATAGCAATTTTGGCTGCATTGTCTTCAAATGAGTTAACAATCACAGATCAGTTTTTATTATATTTCATGATTTATGAGC
AGT