sp|Q9C9K5|PILS3_ARATH ----> Protein PIN-LIKES 3
Intron 1 GTTCTCTCGA ... CTTGCAGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44 | 7 | 4 | 7 |
| A2 | 66.67 | 3 | 7 | 5 |
| A3 | 33.33 | 9 | 2 | 7 |
| A4 | 63.64 | 2 | 5 | 2 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 33.33 | 6 | 2 | 4 |
| A7 | 55.56 | 4 | 5 | 5 |
| A8 | 33.33 | 2 | 1 | 1 |
| A9 | 36.84 | 6 | 5 | 2 |
| A10 | 22.22 | 7 | 2 | 2 |
>TRINITY_DN48472_c1_g1_i4 from sample A7 / Example spliced isoformTAACGCTCAATGGAGAGGAATGGGAATCCCCAGACACTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAA
CTGGCTTACGAGTCGATCGCCGAATCAACTCTTATTAATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTG
TTCTGAAGAGACGGTAGATCATATCTTCTCCCAATGTCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGACCGATTTTAACACAGAATATTAGACGGCCTCCTTTAATTACTTCCACTAGCCCGGTGGGTTACTTTGACGGGGCCGCTCAAAATGGCAGATGCTAT
ATTATCCTTGGAAATGCATATAGCCTGGAGATGAGCATTGGGGTTGGAAGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTCAAGTCCCTTTACT
GGCTTCTTGGAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAATATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAGCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTTGGTACACTGCAGT
TGCATTAAAACAGGGGGAACAATGAAGCCATGAAAGGGCCTACCATAGGCTGTTATTTCGCTATTTTCGTCACCTTCATTCAGGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTG
TGCTGCAGGAAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAAGGGATGAAG
AAACTCAAATAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGCTATTTAAGT
AACCTTACGAATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCTAGATGGAACAATTCCAACAATTACCCTTATCCTTGGAGGAAATCTAACCAGAGGGTTACACTCTTCAACAGTGAAGCCTTCGATTATTATAGGGATTATCCTTGTGCGGTTTTTGTTTCTTCCCTTAATTGGAATATTGATAG
TTAAAGGAGCAACCTATCTTGGGATGGCGCAACCAGATTCACTATATCAATTCATCTTGTTGATACAGTTTGCACTGCCACCTGCTATGAATATTGGAACAATGACACAATTATTTGGTGTTGGCGAAAGCGAGTGCTCTGTTATTTTCCTGTGGACCTATTTATTAGCAGCTATAGCCATCACTGGGTGGTCGACATTA
TACATGTGGCTTCTGAGTTGAAAACAGTTGCATTATTTATAGGTACATATTGATGAGAAATATGTGTTCAATTAGACTCTAGTTTGCTAATACTTCAAGATCTGTGGAATCGGGATAATTCATTAATGTGCATATGAGATAGTTCCCTATTGATAAATGTTTTGCTTCTGCGAAGCCACTTGACAGTATCCTGACATCAA
AGACTTTAAAGATTTTAAGGGCGAACTCTTTGTATTGAGAAATAGTGTAATATTGTCTATGATATTTTGATATTTTCAGTTGTATCTGTTCTTGCTCA
>TRINITY_DN48472_c1_g1_i6 from sample A7 / Example unspliced isoform:TAACGCTCAATGGAGAGGAATGGGAATCCCCAGACACTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAA
CTGGCTTACGAGTCGATCGCCGAATCAACTCTTATTAATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTG
TTCTGAAGAGACGGTAGATCATATCTTCTCCCAATGTCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGgttctctcgattcttgtctatgtctgtggtataggaaacataattatatgatatattatccccttctttttatttggggaatttgaattttggctta
cccggaacaaaatcattttcgaaggacttactttctctatgtcaggggctgccgcttacatttcacatttcttatcatccttcacttgcagcagACCGATTTTAACACAGAATATTAGACGGCCTCCTTTAATTACTTCCACTAGCCCGGTGGGTTACTTTGACGGGGCCGCTCAAAATGGCAGATGCTATATTATCCTT
GGAAATGCATATAGCCTGGAGATGAGCATTGGGGTTGGAAGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTCAAGTCCCTTTACTGGCTTCTTG
GAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAATATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAGCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTTGGTACACTGCAGTTGCATTAAA
ACAGGGGGAACAATGAAGCCATGAAAGGGCCTACCATAGGCTGTTATTTCGCTATTTTCGTCACCTTCATTCAGGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGG
AAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAAGGGATGAAGAAACTCAAA
TAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGCTATTTAAGTAACCTTACG
AATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCT
Intron 2 GTTCTCTCGA ... TCTATGTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.64 | 2 | 4 | 3 |
| A2 | 70 | 3 | 7 | 7 |
| A3 | 60 | 2 | 2 | 4 |
| A4 | 46.67 | 4 | 5 | 2 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 20 | 4 | 2 | 0 |
| A7 | 66.67 | 3 | 5 | 7 |
| A8 | 33.33 | 1 | 1 | 0 |
| A9 | 42.86 | 4 | 5 | 1 |
| A10 | 55.56 | 2 | 2 | 3 |
>TRINITY_DN48472_c1_g1_i7 from sample A7 / Example spliced isoformTAACGCTCAATGGAGAGGAATGGGAATCCCCAGACACTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAA
CTGGCTTACGAGTCGATCGCCGAATCAACTCTTATTAATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTG
TTCTGAAGAGACGGTAGATCATATCTTCTCCCAATGTCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGGGGCTGCCGCTTACATTTCACATTTCTTATCATCCTTCACTTGCAGCAGACCGATTTTAACACAGAATATTAGACGGCCTCCTTTAATTACTTCCAC
TAGCCCGGTGGGTTACTTTGACGGGGCCGCTCAAAATGGCAGATGCTATATTATCCTTGGAAATGCATATAGCCTGGAGATGAGCATTGGGGTTGGAAGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGG
CAATCATAGAATAGATGTCAGGCTCACATCGTCGTCAAGTCCCTTTACTGGCTTCTTGGAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAATATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAGCAAAATCTTGTGGAGG
AGAACAACGTCCGATCATACTAAGTGATTGCATTTTGGTACACTGCAGTTGCATTAAAACAGGGGGAACAATGAAGCCATGAAAGGGCCTACCATAGGCTGTTATTTCGCTATTTTCGTCACCTTCATTCAGGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGA
AAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGGAAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGATTGGGGCCATCTACATCTGG
TCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAAGGGATGAAGAAACTCAAATAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGA
TTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGCTATTTAAGTAACCTTACGAATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCTGTTGTGGGGTTTATTATTGGAGCAATACCCCAAACAAAAGGATTATTTGTTGGCCCAAATCCTCCTCTTCAAGTTATCCAAGATTCCATTGCCT
TATTGGGAGATGGAACAATTCCAACAATTACCCTTATCCTTGGAGGAAATCTAACCAGAGGGTTACACTCTTCAACAGTGAAGCCTTCGATTATTATAGGGATTATCCTTGTGCGGTTTTTGTTTCTTCCCTTAATTGGAATATTGATAGTTAAAGGAGCAACCTATCTTGGGATGGCGCAACCAGATTCACTATATCAA
TTCATCTTGTTGATACAGTTTGCACTGCCACCTGCTATGAATATTGGAACAATGACACAATTATTTGGTGTTGGCGAAAGCGAGTGCTCTGTTATTTTCCTGTGGACCTATTTATTAGCAGCTATAGCCATCACTGGGTGGTCGACATTATACATGTGGCTTCTGAGTTGAAAACAGTTGCATTATTTATAGGTACATAT
TGATGAGAAATATGTGTTCAATTAGACTCTAGTTTGCTAATACTTCAAGATCTGTGGAATCGGGATAATTCATTAATGTGCATATGAGATAGTTCCCTATTGATAAATGTTTTGCTTCTGCGAAGCCACTTGACAGTATCCTGACATCAAAGACTTTAAAGATTTTAAGGGCGAACTCTTTGTATTGAGAAATAGTGTAA
TATTGTCTATGATATTTTGATATTTTCAGTTGTATCTGTTCTTGCTCA
>TRINITY_DN48472_c1_g1_i6 from sample A7 / Example unspliced isoform:TAACGCTCAATGGAGAGGAATGGGAATCCCCAGACACTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAA
CTGGCTTACGAGTCGATCGCCGAATCAACTCTTATTAATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTG
TTCTGAAGAGACGGTAGATCATATCTTCTCCCAATGTCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGgttctctcgattcttgtctatgtctgtggtataggaaacataattatatgatatattatccccttctttttatttggggaatttgaattttggctta
cccggaacaaaatcattttcgaaggacttactttctctatgtcagGGGCTGCCGCTTACATTTCACATTTCTTATCATCCTTCACTTGCAGCAGACCGATTTTAACACAGAATATTAGACGGCCTCCTTTAATTACTTCCACTAGCCCGGTGGGTTACTTTGACGGGGCCGCTCAAAATGGCAGATGCTATATTATCCTT
GGAAATGCATATAGCCTGGAGATGAGCATTGGGGTTGGAAGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTCAAGTCCCTTTACTGGCTTCTTG
GAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAATATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAGCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTTGGTACACTGCAGTTGCATTAAA
ACAGGGGGAACAATGAAGCCATGAAAGGGCCTACCATAGGCTGTTATTTCGCTATTTTCGTCACCTTCATTCAGGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGG
AAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAAGGGATGAAGAAACTCAAA
TAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGCTATTTAAGTAACCTTACG
AATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCT
Intron 3 GTTCTCTCGA ... TCACTTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 7 | 4 | 3 |
| A2 | 57.14 | 3 | 7 | 1 |
| A3 | 25 | 9 | 2 | 4 |
| A4 | 55.56 | 2 | 5 | 0 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 20 | 4 | 2 | 0 |
| A7 | 50 | 4 | 5 | 3 |
| A8 | 20 | 2 | 1 | 0 |
| A9 | 33.33 | 6 | 5 | 1 |
| A10 | 12.5 | 7 | 2 | 0 |
>TRINITY_DN38396_c0_g1_i3 from sample A9 / Example spliced isoformCTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAACTGGCTTACGAGTCGATCGCCGAATCAACTCTTATT
AATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTGTTCTGAAGAGACGGTAGATCATATCTTCTCCCAATG
TCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGCAGACCGATTTTAACACAGAATATTAGACGGCCTCCTTTAATTACTTCCACTAGCCCGGTGGGTTACTTTGACGGGGCCGCTCAAAATGGCAGATGCTATATTATCCTTGGAAATGCATATAGCCTGGAGATG
AGCATTGGGGTTGGAAGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTCAAGTCCCTTTACTGGCTTCTTGGAAACAACTAGTTCAGTATTCACT
TCAATTGTTTGAGAATATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAGCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTTGGTACACTGCAGTTGCATTAAAACAGGGGGAACAATGAAGCCATGA
AAGGGCCTACCATAGGCTGTTATTTCGCTATTTTCGTCACCTTCATTCAGGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGGAAACGTTGGAAATTTGCTTCTGAT
TATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAAGGGATGAAGAAACTCAAATAGAAATTGGGAGTGAGGAGAAGA
TCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGCTATTTAAGTAACCTTACGAATGGACTGCACCTTTCGGAGATA
TTGGCGCCTCCAACAATTGGAGCTGTTGTGGGGTTTATTATTGGAGCAATACCCCAAACAAAAGGATTATTTGTTGGCCCAAATCCTCCTCTTCAAGTTATCCAAGATTCCATTGCCTTATTGGGAGATGGAACAATTCCAACAATTACCCTTATCCTTGGAGGAAATCTAACCAGAGGGTTACACTCTTCAACAGTGAA
GCCTTCGATTATTATAGGGATTATCCTTGTGCGGTTTTTGTTTCTTCCCTTAATTGGAATATTGATAGTTAAAGGAGCAACCTATCTTGGGATGGCGCAACCAGATTCACTATATCAATTCATCTTGTTGATACAGTTTGCACTGCCACCTGCTATGAATATTGGAACAATGACACAATTATTTGGTGTTGGCGAAAGCG
AGTGCTCTGTTATTTTCCTGTGGACCTATTTATTAGCAGCTATAGCCATCACTGGGTGGTCGACATTATACATGTGGCTTCTGAGTTGAAAACAGTTGCATTATTTATAGGTACATATTGATGAGAAATATGTGTTCAATTAGACTCTAGTTTGCTAATACTTCAAGATCTGTGGAATCGGGATAATTCATTAATGTGCA
TATGAGATAGTTCCCTATTGATAAATGTTTTGCTTCTGCGAAGCCACTTGACAGTATCCTGACATCAAAGACTTTAAAGATTTTAAGGGCGAACTCTTTGTATTGAGAAATAGTGTAATATTGTCTATGATATTTTGATATTTTCAGTTGTATCTGTTCTTGCT
>TRINITY_DN38396_c0_g1_i4 from sample A9 / Example unspliced isoform:CTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAACTGGCTTACGAGTCGATCGCCGAATCAACTCTTATT
AATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTGTTCTGAAGAGACGGTAGATCATATCTTCTCCCAATG
TCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGgttctctcgattcttgtctatgtctgtggtataggaaacataattatatgatatattatccccttccttttatttggggaatttgaattttggcttacccggaacaaaatcattttcgaaggacttactttct
ctatgtcaggggctgccgcttacatttcacatttcttatcatccttcacttgcagCAGACCGATTTTA
Intron 4 GTGCTCTTAT ... TCGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.47 | 4 | 20 | 6 |
| A2 | 79.59 | 5 | 32 | 7 |
| A3 | 62.16 | 7 | 16 | 7 |
| A4 | 80.28 | 7 | 34 | 23 |
| A5 | 71.43 | 4 | 17 | 3 |
| A6 | 57.89 | 8 | 11 | 11 |
| A7 | 69.23 | 10 | 25 | 20 |
| A8 | 77.36 | 6 | 31 | 10 |
| A9 | 72 | 7 | 14 | 22 |
| A10 | 63.08 | 12 | 32 | 9 |
>TRINITY_DN45948_c0_g1_i9 from sample A10 / Example spliced isoformAGTAAACTTGGCATATGCTTTTTGGATAAACGGGCTCCCCTTTGCAACATTGAGATGCCTGGTTTTTTCGATGGTTGTGTTCAGATGTGACAAAATCATGCTGGACAGATGGGATATGTTGTTAATGGCTATTGCAACATTTCATGTGTTCTTGGCTCCTTACACAAAAGTTGAAGAGAGCTTCAATGTCCAGGCAATAC
ATGATATCCTTTATCATCACTATCACTTAGAAAAGTATGATCATTTTGAATTTCCAGGAGTTGTACCCCGCACCTTCATAGGTCAGATTGAAGTTTGGTCAACAGGTCTCCAACTTATTTGCAATAATGATAGCTCTGCAGTTCCATCTTTTATTTTACTGTTCAAGACCACTTCCAAATATTTTTGCTCTGGCTGTAGT
AAACTTGGCATATGCTTTTTGGATAAACGGGCTCCCCTTTGCAACATTGAGATGCCTGGTTTTTTCGATGGTTGTGTTCAGATGTGATATTGTGTTGCTCCTGTGTCCTATTGGTTTACACTTTCTGCTGACTAGACAAGTTACGTTATTGAGCGCTGTAAGATGCTGTGCAACTACAGCTCTTTTGAGCATAGGGGCTA
CAATCCTGATTGACTCAATTATGTGGAAAAGGATCACATGGCCAGAAATGGAGGTTTTCTGGTTTAATTCTGTCTTGAACCGTAGCTCTGAATGGGGTGTATTTCCGGTGCATTGGTATTTTACATCAGCTCTTCCACGATCAATGTTGGCGGCATTTCCACTGTGCTTTCTAGGTGTAATCCTTGAGAGAAGGATGCTA
GAGTACATGTTACCTGTCTTTGCCTTTATTGTACTTTACTCCAAACTTCCACACAAGGAGCTCCGGTTTATAATTTTGGCAATTCCCATGCTGAACCTCTCTGCAGCAATTGCAGCTACAAGAATTTACAACAACAGGAAGAAAACAATCTGGAAGTGGGCATACATTGGCATGATTGGCTCACTCTTTGCAAGTTTAGG
ATTCTCTATGATTATGAGTGCTGCTTCATATGCAAACTACCCAGCTGGCTATGCACTAGATGCTCTTCACCATAAAGACTTTAACAGAACTTCCAGCTGTGTGGTTCACATTGATTCAATGGCAGCAATGAATGGTATTTCCCGCTTTTGTGAAAAGGATCTTCTTTGGAGGTATTCCAAGGAAGAACATATTTCTGATG
AAGAAATCCTTGCCAAAAGTTTTACGTATCTGATCAATGAACGTTCAAGAATACCTGGCTTTAAATGCTTATTGGCTACCTCTGGATTTTCTAGGCTACTTGTTCAGCTCTCCTTCCCACCTGTTCGCCTGTTAACTGAGCCCAAAGTTTTTGTCCATGGCAATATAAGAAGTGAAGGTATTGAAGATATAAGATGGCCT
GGTTGTCCTTACTCCTAGCAGGAGAACCACACAGCTGTCAACTTATCCAATAATATTACTAGAGTTGAAGTGTTTAATCTTAATTGTCCAAGAATGGTATTCTTCCAGCATTGCAGTGGAAGATTGCAATGCTTGAATCACATTTAAGGGTTATTCTTTTGTATATGGAACCCTGCCATATCTAAGCATAGGTGTTTTTT
ATCATAATAACATTTAATTTATTTTATTTTCACTGTGTTTAAATCATAGGCTGTATTGACATTTCCTGTATGGAAATTCAGACCATGTTTAAAATACGGTGAATATTCGGCATAGTTCAAATACGATACATTCAACAAATCCTTGGCCAAATTCTACTATGGCCACTTTATTTATTTATAAAAACACTCATTTAAAA
>TRINITY_DN45948_c0_g1_i19 from sample A10 / Example unspliced isoform:GGGGCCAAGCTGCCGTGTGAAAATCTCAAAGAGAGAAGTGTGATAGGGGATTGATGTGTAAAGCGTATAGTAATATAACTTTGTGGGTGCACCTACAGCCCCTGCTTTGTCGTATAGAGGGAACTTGGCTGTTTTCACAAAGTTGTCGAAGGTCTAAGAAATTATATATTGTTGAACTAGAGATTTAATGGCATGCGAGT
AGTGATGGTTTTCTTGCTGAAGGCCGGTAGGAGATTCTGGAGTGACAAAATCATGCTGGACAGATGGGATATGTTGTTAATGGCTATTGCAACATTTCATGTGTTCTTGGCTCCTTACACAAAAGTTGAAGAGAGCTTCAATGTCCAGGCAATACATGATATCCTTTATCATCACTATCACTTAGAAAAGTATGATCATT
TTGAATTTCCAGGAGTTGTACCCCGCACCTTCATAGgtgctcttattgtatctctactatcatcaccatttatagcagctatcaatctcttaaaactaccaaagctgtatggaattttaatcgctcgtctggtactagggagcattgtattgtcaggtttacatctttttcgaatgcagGTCAGATTGAAGTTTGGTCAA
CAGGTCTCCAACTTATTTGCAATAATGATAGCTCTGCAGTTCCATCTTTTATTTTACTGTTCAAGACCACTTCCAAATATTTTTGCTCTGGCTGTAGTAAACTTGGCATATGCTTTTTGGATAAACGGGCTCCCCTTTGCAACATTGAGATGCCTGGTTTTTTCGATGGTTGTGTTCAGATGTGATATTGTGTTGCTCCT
GTGTCCTATTGGTTTACACTTTCTGCTGACTAGACAAGTTACGTTATTGAGCGCTGTAAGATGCTGTGCAACTACAGCTCTTTTGAGCATAGGGGCTACAATCCTGATTGACTCAATTATGTGGAAAAGGATCACATGGCCAGAAATGGAGGTTTTCTGGTTTAATTCTGTCTTGAACCGTAGCTCTGAATGGGGTGTAT
TTCCGGTGCATTGGTATTTTACATCAGCTCTTCCACGATCAATGTTGGCGGCATTTCCACTGTGCTTTCTAGGTGTAATCCTTGAGAGAAGGATGCTAGAGTACATGTTACCTGTCTTTGCCTTTATTGTACTTTACTCCAAACTTCCACACAAGGAGCTCCGGTTTATAATTTTGGCAATTCCCATGCTGAACCTCTCT
GCAGCAATTGCAGCTACAAGAATTTACAACAACAGGAAGAAAACAATCTGGAAGTGGGCATACATTGGCATGATTGGCTCACTCTTTGCAAGTTTAGGATTCTCTATGATTATGAGTGCTGCTTCATATGCAAACTACCCAGCTGGCTATGCACTAGATGCTCTTCACCATAAAGACTTTAACAGAACTTCCAGCTGTGT
GGTTCACATTGATTCAATGGCAGCAATGAATGGTATTTCCCGCTTTTGTGAAAAGGATCTTCTTTGGAGGTATTCCAAGGAAGAACATATTTCTGATGAAGAAATCCTTGCCAAAAGTTTTACGTATCTGATCAATGAACGTTCAAGAATACCTGGCTTTAAATGCTTATTGGCTACCTCTGGATTTTCTAGGCTACTTG
TTCAGCTCTCCTTCCCACCTGTTCGCCTGTTAACTGAGCCCAAAGTTTTTGTCCATGGCAATATAAGAAGTGAAGGTATTGAAGATATAAGATGGCCTGGTTGTCCTTACTCCTAGCAGGAGAACCACACAGCTGTCAACTTATCCAATAATATTACTAGAGTTGAAGTGTTTAATCTTAATTGTCCAAGAATGGTATTC
TTCCAGCATTGCAGTGGAAGATTGCAATGCTTGAATCACATTTAAGGGTTATTCTTTTGTATATGGAACCCTGCCATATCTAAGCATAGGTGTTTTTTATCATAATAACATTTAATTTATTTTATTTTCACTGTGTTTAAATCATAGGCTGTATTGACATTTCCTGTATGGAAATTCAGACCATGTTTAAAATACGGTGA
ATATTCGGCATAGTTCAAATACGATACATTCAACAAATCCTTGGCCAAATTCTACTATGGCCACTTTATTTATTTATAAAAACACTCATTTAAAA
Intron 5 GTAATGATGA ... CAAAAACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.79 | 13 | 38 | 25 |
| A2 | 67.74 | 15 | 40 | 23 |
| A3 | 66.15 | 22 | 54 | 32 |
| A4 | 63.86 | 15 | 34 | 19 |
| A5 | 71.43 | 9 | 27 | 18 |
| A6 | 72.31 | 9 | 27 | 20 |
| A7 | 69.23 | 12 | 31 | 23 |
| A8 | 64.71 | 15 | 33 | 22 |
| A9 | 66.1 | 10 | 23 | 16 |
| A10 | 77.78 | 5 | 19 | 16 |
>TRINITY_DN45948_c0_g1_i4 from sample A10 / Example spliced isoformCGTTCTTTTAATTTGGTTAGGGCGAGAGACTTTGAAGGTGGCTGCGGGAATGTTTAAGGAGGAACTCCGCCTTGTTATGCCGAGCCGATTCTACAAGAGTGTTTGGGGGTGCTGCGATTTGCCTACGGTGCATTTCTACAGTATAAGAGATGGCGCTCTTTGCCTCTTCCGGATTACGAATTCGATTTCCCTCTCAAAAC
AAATTCGGTAGATTGCTGGGGAAAGAGGATAGCCGAAGGAGCTTGATACCCTTTCAGTTCTTTTTATAGATATCTAGATGATTTAAGAGGGGATTCCTTACTATTCTCTGCACTGACGAAAGGCGGATACTTCTGAGGAATCAAGGAGATCTTGGAATCATGCGAAGAGGTAAAAAACTAGAGCACCCA
>TRINITY_DN45948_c0_g1_i5 from sample A10 / Example unspliced isoform:CGTTCTTTTAATTTGGTTAGGGCGAGAGACTTTGAAGGTGGCTGCGGGAATGTTTAAGGAGGAACTCCGCCTTGTTATGCCGAGCCGATTCTACAAGAGTGTTTGGGGGTGCTGCGATTTGCCTACGGTGCATTTCTACAGTATAAGAGATGGCGCTCTTTGCCTCTTCCGGATTACGAATTCGATTTCCCTCTCAAAAC
AAATTCGGTAGATTGCTGGGGAAAGAGGATAGCCGAAGGAGCTTGATACCCTTTCAGTTCTTTTTATAGATATCTAGATGATTTAAGAGGGGATTCCTTACTATTCTCTGCACTGACGAAAGGCGGATACTTCTGAGGAATCAAGGAGATCTTGGAATCATGCGAAGAGgtaatgatgattttctgcctggatccaagac
aaaaaccagGTAAAAAACTAGAGCACCCTTGCAACTACATTGACCATGATGCTCTCAGCCGAAATTTTGCTAAGCAGATATCAAAATCTGCAAAATACTTCTGCATTGTGACACGGGCTTCCATACAAGAAAAGAAAAAGACTTTCCAAAAAATTCTGTTTTTTGATATGGTCATGGTCTTACCAAGTGAACATGGATAG
ATGCATATGCCTCTAGTTCTTCGGCTAGTTTTGTACCCTTGCATTTAAAAAAAAATAGTCCTCGATGGACAACCTCAAATTTTGTTTAGCAATCACTTCTAATAGGACCTTACAATCAGAATGGTCAACTGCTAGAGTTTTGTGCTGATGTATACAACACCTCTCCATGCATCCTATATGTTGCCAAACACTGTTGTCAT
GATTTTGATGAAAACATATAAATACATATTCAGGAAAAAAAACTAGAATTGGATACTTGTAAAGGCATACATAATCAAGTGCAGATTTTGTAGATATTTTCTGTGCCTGGCAATGTATATATGCAGTTGATCATTTGTACATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Intron 6 GTACACTGCA ... CTTCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.78 | 15 | 7 | 12 |
| A2 | 68.75 | 5 | 12 | 10 |
| A3 | 61.29 | 6 | 11 | 8 |
| A4 | 71.43 | 2 | 5 | 5 |
| A5 | 57.14 | 3 | 2 | 6 |
| A6 | 60 | 4 | 6 | 6 |
| A7 | 69.7 | 5 | 13 | 10 |
| A8 | 68 | 4 | 7 | 10 |
| A9 | 80 | 2 | 9 | 7 |
| A10 | 47.37 | 5 | 1 | 8 |
>TRINITY_DN35901_c0_g1_i1 from sample A6 / Example spliced isoformCTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAACTGGCTTACGAGTCGATCGCCGAATCAACTCTTATT
AATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTGTTCTGAAGAGACGGTAGATCATATCTTCTCCCAATG
TCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGGGGCTGCCGCTTACATTTCACATTTCTTATCATCCTTCACTTGCAGCAGACCGATTTTAACACAGAATATTAGACGGCCTCCTTTAATTACTTCCACTAGCCCGGTGGGTTACTTTGACGGGGCCGCTCAAAA
TGGCAGATGCTATATTATCCTTGGAAATGCATATAGCCTGGAGATGAGCATTGGGGTTGGAAGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTC
AAGTCCCTTTACTGGCTTCTTGGAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAATATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAGCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTT
GGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGGAAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCT
GGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAAGGGATGAAGAAACTCAAATAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGA
GGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGCTATTTAAGTAACCTTACGAATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCTGTTGTGGGGTTTATTATTGGAGCAA
TACCCCAAACAAAAGGATTATTTGTTGGCCCAAATCCTCGTCTTCAAGTTATCCAAGATTCCATTGCCTTATTGGGAGATGGAACAATTCCAACAATTACCCTTATCCTTGGAGGAAATCTAACCAGAGGGTTACACTCTTCAACAGTGAAGCCTTCGATTATTATAGGGATTATCCTTGTGCGGTTTTTGTTTCTTCCC
TTAATTGGAATATTGATAGTTAAAGGAGCAACCTATCTTGGGATGGCGCAACCAGATTCACTATATCAATTCATCTTGTTGATACAGTTTGCACTGCCACCTGCTATGAATATTGGAACAATGACACAATTATTTGGTGTTGGCGAAAGCGAGTGCTCTGTTATTTTCCTGTGGACCTATTTATTAGCAGCTATAGCCAT
CACTGGGTGGTCGACATTATACATGTGGCTTCTGAGTTGAAAACAGTTGCATTATTTATAGGTACATATTGATGAGAAATATGTGTTCAATTAGACTCTAGTTTGCTAATACTTCAAGATCTGTGGAATCGGGATAATTCATTAATGTGCATATGAGATAGTTCCCTATTGATAAATGTTTTGCTTCTGCGAAGCCACTT
GACAGTATCCTGACATCAAAGACTTTAAAGATTTTAAGGGCGAACTCTTTGTATTGAGAAATAGTGTAATATTGTCTATGATATTTTGATATTTTCAGTTGTATCTGTTCTTGCTC
>TRINITY_DN35901_c0_g1_i2 from sample A6 / Example unspliced isoform:CTCTTACTGGCTAAAGGTTCGGGACTTAAATTCCCCAGGGGCGAGAGGGATCGGAATGGGATGACTATGTCTCCGAGCTTGCACATTCTGGCATCACCCTTAACGGTGATTTGGATAAATTATATTGGTCTTTTGGTGGCAGTGACGGGAGTATCACCACTAAACTGGCTTACGAGTCGATCGCCGAATCAACTCTTATT
AATAATTCACTATGGTGGAACAAACATCTGTGGAAATGGGACGTACCGATGAAGATAAAGACTTTTATATGGCTGGCGTTACACCATCGGATACTTACGGGAGATGTATACATATACAGAAACCGGTGCGGCATCGGTTCTTCGTGCTGCTATTTATGTTTCTGTTCTGAAGAGACGGTAGATCATATCTTCTCCCAATG
TCCTATTACGCTACAGATCTGGAAGAGCTTACTACTCGTTTCAGGATCTCGGGGGATTGGAATTCAGGGGCTGCCGCTTACATTTCACATTTCTTATCATCCTTCACTTGCAGCAGACCGATTTTAACACAGAATATTAGACGGCCTCCTTTAATTACTTCCACTAGCCCGGTGGGTTACTTTGACGGGGCCGCTCAAAA
TGGCAGATGCTATATTATCCTTGGAAATGCATATAGCCTGGAGATGAGCATTGGGGTTGGAAGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTC
AAGTCCCTTTACTGGCTTCTTGGAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAATATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAGCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTT
GgtacactgcagttgcattaaaacagggggaacaatgaagccatgaaagggcctaccataggctgttatttcgctattttcgtcaccttcattcagGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTG
TTATTGGAAACTGTGCTGCAGGAAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGT
CAAAGGGATGAAGAAACTCAAATAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCA
ACGCTATTTAAGTAACCTTACGAATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCTGTTGTGGGGTTTATTATTGGAGCAATACCCCAAACAAAAGGATTATTTGTTGGCCCAAATCCTCGTCTTCAAGTTATCCAAGATTCCATTGCCTTATTGGGAGATGGAACAATTCCAACAATTACCCTTA
TCCTTGGAGGAAATCTAACCAGAGGGTTACACTCTTCAACAGTGAAGCCTTCGATTATTATAGGGATTATCCTTGTGCGGTTTTTGTTTCTTCCCTTAATTGGAATATTGATAGTTAAAGGAGCAACCTATCTTGGGATGGCGCAACCAGATTCACTATATCAATTCATCTTGTTGATACAGTTTGCACTGCCACCTGCT
ATGAATATTGGAACAATGACACAATTATTTGGTGTTGGCGAAAGCGAGTGCTCTGTTATTTTCCTGTGGACCTATTTATTAGCAGCTATAGCCATCACTGGGTGGTCGACATTATACATGTGGCTTCTGAGTTGAAAACAGTTGCATTATTTATAGGTACATATTGATGAGAAATATGTGTTCAATTAGACTCTAGTTTG
CTAATACTTCAAGATCTGTGGAATCGGGATAATTCATTAATGTGCATATGAGATAGTTCCCTATTGATAAATGTTTTGCTTCTGCGAAGCCACTTGACAGTATCCTGACATCAAAGACTTTAAAGATTTTAAGGGCGAACTCTTTGTATTGAGAAATAGTGTAATATTGTCTATGATATTTTGATATTTTCAGTTGTATC
TGTTCTTGCTC
Intron 7 GTCAGATTGA ... CTGGCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.45 | 9 | 6 | 9 |
| A2 | 66.67 | 4 | 7 | 9 |
| A3 | 66.67 | 3 | 7 | 5 |
| A4 | 50.94 | 13 | 23 | 4 |
| A5 | 52.94 | 4 | 3 | 6 |
| A6 | 60.98 | 8 | 11 | 14 |
| A7 | 53.62 | 16 | 20 | 17 |
| A8 | 53.85 | 9 | 10 | 11 |
| A9 | 53.85 | 15 | 22 | 13 |
| A10 | 45 | 11 | 9 | 9 |
>TRINITY_DN45948_c0_g1_i3 from sample A10 / Example spliced isoformGGGGCCAAGCTGCCGTGTGAAAATCTCAAAGAGAGAAGTGTGATAGGGGATTGATGTGTAAAGCGTATAGTAATATAACTTTGTGGGTGCACCTACAGCCCCTGCTTTGTCGTATAGAGGGAACTTGGCTGTTTTCACAAAGTTGTCGAAGGTCTAAGAAATTATATATTGTTGAACTAGAGATTTAATGGCATGCGAGT
AGTGATGGTTTTCTTGCTGAAGGCCGGTAGGAGATTCTGGAGTGACAAAATCATGCTGGACAGATGGGATATGTTGTTAATGGCTATTGCAACATTTCATGTGTTCTTGGCTCCTTACACAAAAGTTGAAGAGAGCTTCAATGTCCAGGCAATACATGATATCCTTTATCATCACTATCACTTAGAAAAGTATGATCATT
TTGAATTTCCAGGAGTTGTACCCCGCACCTTCATAGGTGCTCTTATTGTATCTCTACTATCATCACCATTTATAGCAGCTATCAATCTCTTAAAACTACCAAAGCTGTATGGAATTTTAATCGCTCGTCTGGTACTAGGGAGCATTGTATTGTCAGGTTTACATCTTTTTCGAATGCAGTAAACTTGGCATATGCTTTTT
GGATAAACGGGCTCCCCTTTGCAACATTGAGATGCCTGGTTTTTTCGATGGTTGTGTTCAGATGTGATATTGTGTTGCTCCTGTGTCCTATTGGTTTACACTTTCTGCTGACTAGACAAGTTACGTTATTGAGCGCTGTAAGATGCTGTGCAACTACAGCTCTTTTGAGCATAGGGGCTACAATCCTGATTGACTCAATT
ATGTGGAAAAGGATCACATGGCCAGAAATGGAGGTTTTCTGGTTTAATTCTGTCTTGAACCGTAGCTCTGAATGGGGTGTATTTCCGGTGCATTGGTATTTTACATCAGCTCTTCCACGATCAATGTTGGCGGCATTTCCACTGTGCTTTCTAGGTGTAATCCTTGAGAGAAGGATGCTAGAGTACATGTTACCTGTCTT
TGCCTTTATTGTACTTTACTCCAAACTTCCACACAAGGAGCTCCGGTTTATAATTTTGGCAATTCCCATGCTGAACCTCTCTGCAGCAATTGCAGCTACAAGAATTTACAACAACAGGAAGAAAACAATCTGGAAGTGGGCATACATTGGCATGATTGGCTCACTCTTTGCAAGTTTAGGATTCTCTATGATTATGAGTG
CTGCTTCATATGCAAACTACCCAGCTGGCTATGCACTAGATGCTCTTCACCATAAAGACTTTAACAGAACTTCCAGCTGTGTGGTTCACATTGATTCAATGGCAGCAATGAATGGTATTTCCCGCTTTTGTGAAAAGGATCTTCTTTGGAGGTATTCCAAGGAAGAACATATTTCTGATGAAGAAATCCTTGCCAAAAGT
TTTACGTATCTGATCAATGAACGTTCAAGAATACCTGGCTTTAAATGCTTATTGGCTACCTCTGGATTTTCTAGGCTACTTGTTCAGCTCTCCTTCCCACCTGTTCGCCTGTTAACTGAGCCCAAAGTTTTTGTCCATGGCAATATAAGAAGTGAAGGTATTGAAGATATAAGATGGCCTGGTTGTCCTTACTCCTAGCA
GGAGAACCACACAGCTGTCAACTTATCCAATAATATTACTAGAGTTGAAGTGTTTAATCTTAATTGTCCAAGAATGGTATTCTTCCAGCATTGCAGTGGAAGATTGCAATGCTTGAATCACATTTAAGGGTTATTCTTTTGTATATGGAACCCTGCCATATCTAAGCATAGGTGTTTTTTATCATAATAACATTTAATTT
ATTTTATTTTCACTGTGTTTAAATCATAGGCTGTATTGACATTTCCTGTATGGAAATTCAGACCATGTTTAAAATACGGTGAATATTCGGCATAGTTCAAATACGATACATTCAACAAATCCTTGGCCAAATTCTACTATGGCCACTTTATTTATTTATAAAAACACTCATTTAAAA
>TRINITY_DN45948_c0_g1_i11 from sample A10 / Example unspliced isoform:TCTACAAGTATCATATGTAAAAGGTTCTGATTTATATAAATGGTGATAACGTATATTGGCTAATTTAGAATCTGTAACTTATGTGATCCAGGTCTAAGAAATTATATATTGTTGAACTAGAGATTTAATGGCATGCGAGTAGTGATGGTTTTCTTGCTGAAGGCCGGTAGGAGATTCTGGAGTGACAAAATCATGCTGGA
CAGATGGGATATGTTGTTAATGGCTATTGCAACATTTCATGTGTTCTTGGCTCCTTACACAAAAGTTGAAGAGAGCTTCAATGTCCAGGCAATACATGATATCCTTTATCATCACTATCACTTAGAAAAGTATGATCATTTTGAATTTCCAGGAGTTGTACCCCGCACCTTCATAGGTGCTCTTATTGTATCTCTACTAT
CATCACCATTTATAGCAGCTATCAATCTCTTAAAACTACCAAAGCTGTATGGAATTTTAATCGCTCGTCTGGTACTAGGGAGCATTGTATTGTCAGGTTTACATCTTTTTCGAATGCAGgtcagattgaagtttggtcaacaggtctccaacttatttgcaataatgatagctctgcagttccatcttttattttactgt
tcaagaccacttccaaatatttttgctctggctgtagTAAACTTGGCATATGCTTTTTGGATAAACGGGCTCCCCTTTGCAACATTGAGATGCCTGGTTTTTTCGATGGTTGTGTTCAGATGTGATATTGTGTTGCTCCTGTGTCCTATTGGTTTACACTTTCTGCTGACTAGACAAGTTACGTTATTGAGCGCTGTAAG
ATGCTGTGCAACTACAGCTCTTTTGAGCATAGGGGCTACAATCCTGATTGACTCAATTATGTGGAAAAGGATCACATGGCCAGAAATGGAGGTTTTCTGGTTTAATTCTGTCTTGAACCGTAGCTCTGAATGGGGTGTATTTCCGGTGCATTGGTATTTTACATCAGCTCTTCCACGATCAATGTTGGCGGCATTTCCAC
TGTGCTTTCTAGGTGTAATCCTTGAGAGAAGGATGCTAGAGTACATGTTACCTGTCTTTGCCTTTATTGTACTTTACTCCAAACTTCCACACAAGGAGCTCCGGTTTATAATTTTGGCAATTCCCATGCTGAACCTCTCTGCAGCAATTGCAGCTACAAGAATTTACAACAACAGGAAGAAAACAATCTGGAAGTGGGCA
TACATTGGCATGATTGGCTCACTCTTTGCAAGTTTAGGATTCTCTATGATTATGAGTGCTGCTTCATATGCAAACTACCCAGCTGGCTATGCACTAGATGCTCTTCACCATAAAGACTTTAACAGAACTTCCAGCTGTGTGGTTCACATTGATTCAATGGCAGCAATGAATGGTATTTCCCGCTTTTGTGAAAAGGATCT
TCTTTGGAGGTATTCCAAGGAAGAACATATTTCTGATGAAGAAATCCTTGCCAAAAGTTTTACGTATCTGATCAATGAACGTTCAAGAATACCTGGCTTTAAATGCTTATTGGCTACCTCTGGATTTTCTAGGCTACTTGTTCAGCTCTCCTTCCCACCTGTTCGCCTGTTAACTGAGCCCAAAGTTTTTGTCCATGGCA
ATATAAGAAGTGAAGGTATTGAAGATATAAGATGGCCTGGTTGTCCTTACTCCTAGCAGGAGAACCACACAGCTGTCAACTTATCCAATAATATTACTAGAGTTGAAGTGTTTAATCTTAATTGTCCAAGAATGGTATTCTTCCAGCATTGCAGTGGAAGATTGCAATGCTTGAATCACATTTAAGGGTTATTCTTTTGT
ATATGGAACCCTGCCATATCTAAGCATAGGTGTTTTTTATCATAATAACATTTAATTTATTTTATTTTCACTGTGTTTAAATCATAGGCTGTATTGACATTTCCTGTATGGAAATTCAGACCATGTTTAAAATACGGTGAATATTCGGCATAGTTCAAATACGATACATTCAACAAATCCTTGGCCAAATTCTACTATGG
CCACTTTATTTATTTATAAAAACACTCATTTAAAA
Intron 8 GTATACTATT ... GCTAGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 12 | 10 | 2 |
| A2 | 22.58 | 12 | 1 | 6 |
| A3 | 31.03 | 10 | 6 | 3 |
| A4 | 42.86 | 2 | 3 | 0 |
| A5 | 33.33 | 7 | 6 | 1 |
| A6 | 13.73 | 22 | 3 | 4 |
| A7 | 22.58 | 12 | 6 | 1 |
| A8 | 18.52 | 11 | 5 | 0 |
| A9 | 20 | 28 | 9 | 5 |
| A10 | 16.67 | 5 | 2 | 0 |
>TRINITY_DN104282_c0_g2_i2 from sample A3 / Example spliced isoformGGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTCAAGTCCCTTTACTGGCTTCTTGGAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAAT
ATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAACCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTTGGTACACTGCAGTTGCATTAAAACAGGGGGAACAATGAAGCCATGAAAGGGCCTACCATAG
GCTGTTATTTCGCTATTTTCGTCACCTTCATTCAGGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGGCAGGTGCATTTTATGCCTATTGCAGGCAATTCAGTAGTC
AATTGGTGTTTTGCATGTTTTTAGATCAAGTCATTGATACTTATTTTAAGTTCGACCATTTAAAATGGGCAAATACAAGGAAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAATTTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGC
GATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAAGGGATGAAGAAACTCAAATAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTC
TGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGCTATTTAAGTAACCTTACGAATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCTGTTGTGGGGTTTATTATTGGAGCAATACCCCAAACAAAAGGATTATTTGTTGGCCCAAATCCTCGTCTTCAA
GTTATCCAAGATTCCATTGCCTTATTGGG
>TRINITY_DN104282_c0_g2_i3 from sample A3 / Example unspliced isoform:GGGGCAGCAATACACGAGCAGAGCTCATTGCACTCTTGGGCCTTCTACAACTGGCATCGAAATGGTCTATCAACAGAATTCAGATTCTTGGCGATTAATCGGCAATCATAGAATAGATGTCAGGCTCACATCGTCGTCAAGTCCCTTTACTGGCTTCTTGGAAACAACTAGTTCAGTATTCACTTCAATTGTTTGAGAAT
ATTGAGTTTCATCACATCGCCAGGATATACAACAAAACTGCAGACGGACTCGAAGAAGGATGGTCGGTTACTTGGATTTATTACAACCAAAATCTTGTGGAGGAGAACAACGTCCGATCATACTAAGTGATTGCATTTTGGTACACTGCAGTTGCATTAAAACAGGGGGAACAATGAAGCCATGAAAGGGCCTACCATAG
GCTGTTATTTCGCTATTTTCGTCACCTTCATTCAGGTGGTACATGCCAGTTAACCTTCTTCTGACATTTTTGATTGGAGGTTTCTGTGGGTGGATCGTTGTGAAAATTACAGGAACTCCAAGGCATCTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGGAAACGTTGGAAATTTGCTTCTGATTATCATCCCTGCAAT
TTGTGAACAAAAAGGCAGTCCTTTCGGAGATGCTGGTGTTTGTATGGACTATGGAATGGCTTACGCATCATTTTCTATGGCGgtatactattccaccaaaacatatataagttcagctttttaaggataaatgataaagtatcctactaatgtccatttacttgttaaattcagcgcacgagagtgagaaggcaatcatg
ttagatgtggggctttactgaatatgccctaatactaaaataaaaatgatattctgaagcttgctatgcaaggacttctatatcatacttgtgatctgtgaaaatacttctcaccctctaacttgtcctgctagagcagATTGGGGCCATCTACATCTGGTCTCTTGTCTACAATATCGTGAGATTATCATCGTGTCAAA
GGGATGAAGAAACTCAAATAGAAATTGGGAGTGAGGAGAAGATCCCAAGTAAGGACTCTTCAAATACTGGACTGCAATCTAGTCTTTTAGAGGAAGTGCATACAGAAGTGCCAAGTTCTACTGGAAAAAATGGGTCTCTGTTTCCATCCGAGACAAAGGATTTTAACAAAGAGGTTGGAAAAGGAAATCTTTTCCAACGC
TATTTAAGTAACCTTACGAATGGACTGCACCTTTCGGAGATATTGGCGCCTCCAACAATTGGAGCTGTTGTGGGGTTTATTATTGGAGCAATACCCCAAACAAAAGGATTATTTGTTGGCCCAAATCCTCGTCTTCAAGTTATCCAAGATTCCATTGCCTTATTGGGAGATGGAACAATTCCAACAATTACCCTTATCCT
TGGAGGAAATCTAACCAGAGGGTTACACTCTTCAACAGTGAAGCCTTCGATTATTATAGGGATTATCCTTGTGCGGTTTTTGTTTCTTCCCTTAATTGGAATATTGATAGTTAAAGGAGCAACCTATCTTGGGATGGCGCAACCAGATTCACTATATCAATTCATCTTGTTGATACAGTTTGCACTGCCACCTGCTATGA
ATATTGGAACAATGACACAATTATTTGGTGTTGGCGAAAGCGAGTGCTCTGTTATTTTCCTGTGGACCTATTTATTAGCAGCTATAGCCATCACTGGGTGGTCGACATTATACATGTGGCTTCTGAGTTGAAAACAGTTGCATTATTTATAGGTACATATTGATGAGAAATATGTGTTCAATTAGACTCTAGTTTGCTAA
TACTTCAAGATCTGTGGAATCGGGATAATTCATTAATGTGCATATGAGATAGTTCCCTA