sp|P55195|PUR6_VIGAC ----> Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment)
Intron 1 GTATGGCAAT ... TTGGCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.59 | 155.5 | 33 | 38 |
| A2 | 17 | 131.8 | 36 | 18 |
| A3 | 17.45 | 149 | 46 | 17 |
| A4 | 14.84 | 132 | 34 | 12 |
| A5 | 23.08 | 65 | 30 | 9 |
| A6 | 19.44 | 58 | 15 | 13 |
| A7 | 18.89 | 201.8 | 66 | 28 |
| A8 | 17.33 | 62 | 20 | 6 |
| A9 | 18.68 | 108.8 | 31 | 19 |
| A10 | 15.63 | 210.5 | 57 | 21 |
>TRINITY_DN120710_c0_g3_i1 from sample A3 / Example spliced isoformAGGGGCACCCAAACCCTTCTTCCACCATTAACGAATAAAAACTGCGATAGGTAAATGGTCTTTATCACATAGTTTCTTTCTCTACCAGGCGCACATATCATCGACTTTCCGGTACGAATCAATTTTCTTTATAGACGATGCATACTCTCAATCGAGAAATTTGTGGGTGTGCTTCTCTGCTACAACCACGTATGGATAGT
CTGTTCTTTGCCACTGGTTCTTCTGTAAGATTCTCACCATCATTTTGCTTGCCTTTGAGGCCAGTAATCAAACCAAACCCATTTCATCTGTATTCTCACAAGCTACACATTCAGCACATTGGATTTTATGGAGCTGCCAATCCACAGAGCTCTCATATTCGACCGCAGCTGAATTACTCGAGGATTTCCAGACAAGATAC
ACCAGCAGCGAATCAAGCAGCAACATGTGGGGATCTTTGTACTAGTGTTATTGGGCTGTGTGACACAGTTGTGGGAGTTTTGGGTGGAGGTCAGTTGGGCCGGATGCTTTGTCAGGCAGCCTCAAAGATGGGCGTGAAGGTAGCAGTACTGGATCCTTTGGAAAACTGCCCTGCAAGTGCTCTTGCCTACAAGCATGTTG
TAGGCAGTTTCAGGGACACAAATGCAGTTCAAGAATTTGCAAAAGGGTGTGGGGTATTGACTGTAGAAATAGAGCACGTGGATGTTGAGACACTGGAAATGCTTGAAGAACAAGGAGTGGATTGCCAACCCAATAGTTGGACTATTCGGCTTATCCAAGACAAGTATTTGCAAAAGATTCACTTTAGCCAGCATGATGTT
CCCCTCCCAGATTTTATGCAGATTGATCGCTTTGAAAGTGCAGAGAAGGCAGGTGATTTGTTTTCCTATCCTTTTGTGATCAAAAGTAGGCGACTTGCTTATGATGGGCGAGGAAATGCTGTTGTATATTGCAAAGAGGACATAACTGTAGCTGTGTCAGCATTAGGAGGGTTTGAGCGTGGCCTGTATGCTGAGAAGTG
GGCACCCTTTATCAAGGAGCTAGCAGTTATTTTGGCAAGAGGACGGGATGGTTCTGTTTGTTGTTTTCCAGTGGTTGAAACCACCCACAAGTAAGAACTATTCAGCCCTGCATCCTCTCAAAAAGTGCCCATATCACGATGCTTTATTCCACGCTTGGAAAGGCTGTGTTTTTCTATACACCTTTTTTACAGTTATGTAA
GTGAGCATTAGATTTTGTTGCTCTGATGCTGTAGTATGCTTTTTTGAAGCAGGCTGATTTATTCTCTAAATGTTATACCAATTTGATGTTGTCTTTTTTTCAAGTAAAAGTCAGGTA
>TRINITY_DN120710_c0_g3_i8 from sample A3 / Example unspliced isoform:AGGGGCACCCAAACCCTTCTTCCACCATTAACGAATAAAAACTGCGATAGGTAAATGGTCTTTATCACATAGTTTCTTTCTCTACCAGGCGCACATATCATCGACTTTCCGGTACGAATCAATTTTCTTTATAGACGATGCATACTCTCAATCGAGAAATTTGTGGGTGTGCTTCTCTGCTACAACCACGTATGGATAGT
CTGTTCTTTGCCACTGGTTCTTCTGTAAGATTCTCACCATCATTTTGCTTGCCTTTGAGGCCAGTAATCAAACCAAACCCATTTCATCTGTATTCTCACAAGCTACACATTCAGCACATTGGATTTTATGGAGCTGCCAATCCACAGAGCTCTCATATTCGACCGCAGCTGAATTACTCGAGGATTTCCAGACAAGATAC
ACCAGCAGCGAATCAAGCAGCAACATGTGGGGATCTTTGTACTAGTGTTATTGGGCTGTGTGACACAGTTGTGGGAGTTTTGGGTGGAGGTCAGTTGGGCCGGATGCTTTGTCAGGCAGCCTCAAAGATGGGCGTGAAGGTAGCAGTACTGGATCCTTTGGAAAACTGCCCTGCAAGTGCTCTTGCCTACAAGCATGTTG
TAGGCAGTTTCAGGGACACAAATGCAGTTCAAGAATTTGCAAAAGGgtatggcaattctagatttcactagttatgtgaacattttttctagctctttagattgtattttttatctgaagtcttgatatttatggtatttggaacccaattggcaatagGTGTGGGGTATTGACTGTAGAAATAGAGCACGTGGATGTTG
AGACACTGGAAATGCTTGAAGAACAAGGAGTGGATTGCCAACCCAATAGTTGGACTATTCGGCTTATCCAAGACAAGTATTTGCAAAAGATTCACTTTAGCCAGCATGATGTTCCCCTCCCAGATTTTATGCAGATTGATCGCTTTGAAAGTGCAGAGAAGGCAGGTGATTTGTTTTCCTATCCTTTTGTGATCAAAAGT
AGGCGACTTGCTTATGATGGGCGAGGAAATGCTGTTGTATATTGCAAAGAGGACATAACTGTAGCTGTGTCAGCATTAGGAGGGTTTGAGCGTGGCCTGTATGCTGAGAAGTGGGCACCCTTTATCAAGGAGCTAGCAGTTATTTTGGCAAGAGGACGGGATGGTTCTGTTTGTTGTTTTCCAGTGGTTGAAACCACCCA
CAAGGATAATATTTGCCATATGGTGGAGGCACCAGCTGATGTGTCAACAGAAATAATAAAGGACGCTGTTCGTGTTGCTGAAAAAGCTGTTAGCTCTCTGAAAGGGGCTGGAGTCTTTGCTGTTGAACTCTTTTTGACTGTAGATGGTCAGATTTTACTGAATGAAGTGGCTCCTAGACCCCACAACAGTGGTCATCATA
CAATTGAAGCATGTTATGTCTCACAATTTGAGCAGCATTTGCGAGCTGTTCTTGGTCTTCCACTTGGTGATACATCTATGAAAGTACCAGCTGCCATTATGTATAATTTGCTTGGTGAAGAAGAGGGAGAAGAAGGTTTCTCTATAGCCCATCAACTCATGAGAAAGGCTGTATCAGTTCCTGGTGCAAGTGTTCACTGG
TATGAGAAACCAGAAATGAGAAAGCAGCGTAAGATGGGCCATATCACTGTTGTAGGACCTTCCGTGGACATAGTTAAAGCACGCATTAAATCAATAATATCTGGAGATAGTCAGGCTGAAATCTTTGGCAATAAAAGTACATGGTATCCAGAGTCATCTACCAAAACTTCAAGAAGGGATTGGGCAGTCAGATCTGGAAA
TGGCATTTCACATGTTGGCATTATAATGGGTTCAGATTCTGATCTCCCTGTCATGAAAGATGCAGCAGAGGTTCTTGAATCATTTCAGGTTCCATATGAGATAACCATTGTATCTGCTCATCGGACACCTGAAAGAATGGTAGCTTATGCTCAGCAGGCTCATGAAAGAGGTATTAAGGTCATCATTGCTGGTGCAGGTG
GTGCAGCACATCTGCCCGGTATGGTTGCTGCAATGACCCCACTTCCTGTTATTGGTGTCCCAGTCAGGGCCTCATCATTGGATGGAATGGATTCCTTGCTGTCAATTGTTCAGATGCCTAGAGGTGTCCCTGTGGCTACTGTTGCAATTCAAAATGCCACAAATGCTGGGCTATTGGCAATCCGGATACTGGGATCCACA
GATTCCAACCTACAAGAAAGAATAAGCCAATACCAGATTGATATGAAAGAAACAGTATTGAAGAAGGCAGAGAAGTTAGAAACAGGAGGATGGAAAGCTTATCTTGCTTAGGCTTCATTGGATGCAAAGTGGATTATGTGAGCCTCACAATCGAGAATTCTTTTGTGTGATTTAATGTTCAAGAGCTTCACTTGAAGAAA
TGTAAAATATCTCTGCCTCAAGTATGCATGGAAGTGCACCAGTGAAGCATGGTTCATGTACTATATCGATATGATCTTGTTAATGCTTCCAAGTTCAATGAGCGGTGAGACAGAAAGGCAACAATAGTTAAATTTCACATCCATCTGTGCTCTAATGGAATCAGCTCCATTTGCATAGAAATGTAGAATTTCTTTGCACT
TTCCCACTTTGTATTGTCAAATCCTTCAATTGAAAGTTCGTCTCCTGGTTATCAGTAAATTTCCACCAATTTTAAAATGAGGTCTTCTGATCGAAGTAATATTACTTTTACCGATTACAGAGATAAAAATAGGGTTGAGCATCTCTCTCGTAAATACTAAATTTTGACTTGTCAGAGTATAAATATTGTCTTCTGTAGCG
AATTTTGAATCAATCTGGTTTAGCGGTGCATATCAACATGAAATTGTTGATAATGTTTTTCAGTTGAGAGGTACTCTCATGTCTCTGGCATACAATATTGTATAAAGTTTTACAGGTAATTTCAGGGATTTCCAGGTGGTTTAAAACATTTTCTTAGAGGTTACGTATTCAAATTCAGAGAGGGTCGCTTATATACATCT
ATATTAAGTAGTCAAATCGTTGCTTGGAGGGGTTCAGTGTCCCACAAACGAAGGCAAGTCTCATATATCAATTCGGTGTTTGGATAGAATGTGACCTTAAAATTAGAATGTGATCATTATTATAAAATTATTGTTTTTTATGACCTAAAAGCAAA
Intron 2 GTGAGTAAAA ... ATATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.29 | 106 | 1 | 34 |
| A2 | 19.23 | 84 | 0 | 20 |
| A3 | 22.9 | 101 | 0 | 30 |
| A4 | 30.77 | 81 | 1 | 36 |
| A5 | 20 | 44 | 0 | 11 |
| A6 | 20.59 | 27 | 0 | 7 |
| A7 | 22.62 | 65 | 0 | 19 |
| A8 | 18.92 | 30 | 0 | 7 |
| A9 | 17.53 | 80 | 0 | 17 |
| A10 | 23.93 | 89 | 0 | 28 |
>TRINITY_DN131982_c3_g1_i1 from sample A1 / Example spliced isoformTAACGAATAAAAACTGCGATAGGTAAATGGTCTTTATCACATAGTTTCTTTCTCTACCAGGCGCACATATCATCGACTTTCCGGTACGAATCAATTTTCTTTATAGACGATGCATACTCTCAATCGAGAAATTTGTGGGTGTGCTTCTCTGCTACAACCACGTATGGATAGTCTGTTCTTTGCCACTGGTTCTTCTGTAA
GATTCTCACCATCATTTTGCTTGCCTTTGAGGCCAGTAATCAAACCAAACCCATTTCATCTGTATTCTCACAAGCTACACATTCAGCACATTGGATTTTATGGAGCTGCCAATCCACAGAGCTCTCATATTCGACCGCAGTTGAATTACTCGAGGATTTCCAGACAAGATACACCAGCAGCGAATCAAGCAGCAACATGT
GGGGATCTTTGTACTAGTGTTATTGGGCTGTGTGACACAGTTGTGGGAGTTTTGGGTGGAGGTCAGTTGGGCCGGATGCTTTGTCAGGCAGCCTCAAAGATGGGCGTGAAGGTAGCAGTACTGGATCCTTTGGAAAACTGCCCTGCAAGTGCTCTTGCCTACAAGCATGTTGTAGGCAGTTTCAGGGACACAAATGCAGT
TCAAGAATTTGCAAAAGGGTGTGGGGTATTGACTGTAGAAATAGAGCACGTGGATGTTGAGACACTGGAAATGCTTGAAGAACAAGGAGTGGATTGCCAACCCAATAGTTGGACTATTCGGCTTATCCAAGACAAGTATTTGCAAAAGATTCACTTTAGCCAGCATGATGTTCCCCTCCCAGATTTTATGCAGATTGATC
GCTTTGAAAGTGCAGAGAAGGCAGGTGATTTGTTTTCCTATCCTTTTGTGATCAAAAGTAGGCGACTTGCTTATGATGGGCGAGGAAATGCTGTTGTATATTGCAAAGAGGACATAACTGTAGCTGTGTCAGCATTAGGAGGGTTTGAGCGTGGCCTGTATGCTGAGAAGTGGGCACCCTTTATCAAGGAGCTAGCAGTT
ATTTTGGCAAGAGGACGGGATGGTTCTGTTTGTTGTTTTCCAGTGGTTGAAACCACCCACAAGGATAATATTTGCCATATGGTGGAGGCACCGGCTGATGTGTCAACAGAAATAATAAAGGACGCTGTTCGTGTTGCTGAAAAAGCTGTTAGCTCTCTGAAAGGGGCTGGAGTCTTTGCTGTTGAACTCTTTTTGACTGT
AGATGGTCAGATTTTACTGAATGAAGTGGCTCCTAGACCCCACAACAGTGGTCATCATACAATTGAAGCATGTTATGTCTCACAATTTGAGCAGCATTTGCGAGCTGTTCTTGGTCTTCCACTTGGTGATACATCTATGAAAGTACCAGCTGCCATTATGTATAATTTGCTTGGTGAAGAAGAGGGAGAAGAAGGTTTCT
CTATAGCCCATCAACTCATGAGAAAGGCTGTATCAGTTCCTGGTGCAAGTGTTCACTGGTATGAGAAACCAGAAATGAGAAAGCAGCGTAAGATGGGCCATATCACTGTTGTAGGACCTTCCGTGGACATAGTTAAAGCACGCATTAAATCAATAATATCTGGAGATAGTCAGGCTGAAATCTTTGGCAATAAAAGTACA
TGGTATCCAGAGTCATCTACCAAAACTTCAAGAAGGGATTGGGCAGTCAGATCTGGAAATGGTAATTCAGGCATTTCACATGTTGGCATTATAATGGGTTCAGATTCTGATCTCCCTGTCATGAAAGATGCAGCAGAGGTTCTTGAATCATTTCAGGTTCCATATGAGATAACCATTGTATCTGCTCATCGGACACCTGA
AAGAATGGTAGCTTATGCTCAGCAGGCTCATGAAAGAGGTATTAAGGTCATCATTGCTGGTGCAGGTGGTGCAGCACATCTGCCCGGTATGGTTGCTGCAATGACCCCACTTCCTGTTATTGGTGTCCCAGTCAGGGCCTCATCATTGGATGGAATGGATTCCTTGCTGTCAATTGTTCAGATGCCTAGAGGTGTCCCTG
TGGCTACTGTTGCAATTCAAAATGCCACAAATGCTGGGCTATTGGCAATCCGGATACTGGGATCCACAGATTCCAACCTACAAGAAAGAATAAGCCAATACCAGATTGATATGAAAGAAACAGTATTGAAGAAGGCAGAGAAGTTAGAAACAGGAGGATGGAAAGCTTATCTTGCTTAGGCTTCATTGGATGCAAAGTGG
ATTATGTGAGCCTCACAATCGAGAATTCTTTTGTGTGATTTAATGTTCAAGAGCTTCACTTGAAGAAATGTAAAATATCTCTGCCTCAAGTATGCATGGAAGTGCACCAGTGAAGCATGGTTCATGTACTATATCGATATGATCTTGTTAATGCTTCCAAGTTCAATGAGCGGTGAGACAGAAAGGCAACAATAGTTAAA
TTTCACATCCATCTGTGCTCTAATGGAATCAGCTCCATTTGCATAGAAATGTAGAATTTCTTTGCACTTTCCCACTTTGTATTGTCAAATCCTTCAATTGAAAGTTCGTCTCCTGGTTATCAGTAAATTTCCACCAATTTTAAAATGAGGTCTTCTGATCGAAGTAATATTACTTTTACCGATTACAGAGATAAAAATAG
GGTTGAGCATCTCTCTCGTAAATACTAAATTTTGACTTGTCAGAGTATAAATATTGTCTTCTGTAGCGAATTTTGAATCAATCTGGTTTAGCGGTGCATATCAACATGAAATTGTTGATAATGTTTTTCAGTTGAGAGGTACTCTCATGTCTCTGGCATACAATATTGTATAAAGTTTTACAGGTAATTTCAGGGATTTC
CAGGTGGTTTAAAACATTTTCTTAGAGGTTACGTATTCAAATTCAGAGAGGGTCGCTTATATACATCTATATTAAGTAGTCAAATCGTTGCTTGGAGGGGTTCAGTGTCCCACAAACGAAGGCAAGTCTCATATATCAATTCGGTGTTTGGATAGAATGTGACCTTAAAATTAGAATGTGATCATTATTATAAAATTATT
GTTTTTTATGACCTGAAAGCAAAAATCTTGTCAGAATTCATTGCCTTCCTACAAACTTGTACCAACTTGCACTTGTGTGAGGTACTGATATTTTGTTTATACTAAAAGTGAGAATGCAAACAAATATGAAATACTTCTTGGACATTGTTATTTAGAGTTGTATTTGTACATACCCTATTGCAATGCATGTCTTCTATGCA
TTAAATTGTGTATTCC
>TRINITY_DN131982_c3_g1_i3 from sample A1 / Example unspliced isoform:CAAGCAGCAACATGgtgagtaaaacatagacttcaatgtatatatccaatgggtttcttgtttattgtaaaatctcgaatttacgtgtattgaatttggaaacgagggatatgcttttttgtgctgtgtataacttgggcattgcgatatggcaatattattaaaaacttgacacgggcattgaaagcatgggtgcgatg
gatattggttacggtatatgacatatgtgacatgggcattgtgtgaatatataaatgatgttcctgtttcggcttttgtttctcctgatatatgtgcagTGGGGATCTTTGTACTAGTGTTATTGGGCTGTGTGACACAGTTGTGGGAGTTTTGGGTGGAGGTCAGTTGGGCCGGATGCTTTGTCAGGCAGCCTCAAAGA
TGGGCGTGAAGGTAGCAGTACTGGATCCTTTGGAAAACTGCCCTGCAAGTGCTCTTGCCTACAAGCATGTTGTAGGCAGTTTCAGGGACACAAATGCAGTTCAAGAATTTGCAAAAGGGTGTGGGGTATTGACTGTAGAAATAGAGCACGTGGATGTTGAGACACTGGAAATGCTTGAAGAACAAGGAGTGGATTGCCAA
CCCAATAGTTGGACTATTCGGCTTATCCAAGACAAGTATTTGCAAAAGATTCACTTTAGCCAGCATGATGTTCCCCTCCCAGATTTTATGCAGATTGATCGCTTTGAAAGTGCAGAGAAGGCAGGTGATTTGTTTTCCTATCCTTTTGTGATCAAAAGTAGGCGACTTGCTTATGATGGGCGAGGAAATGCTGTTGTATA
TTGCAAAGAGGACATAACTGTAGCTGTGTCAGCATTAGGAGGGTTTGAGCGTGGCCTGTATGCTGAGAAGTGGGCACCCTTTATCAAGGAGCTAGCAGTTATTTTGGCAAGAGGACGGGATGGTTCTGTTTGTTGTTTTCCAGTGGTTGAAACCACCCACAAGTAAGAACTATTCAGCCCTGCATCCTCTCAAAAAGTGC
CCATATCACGATGCTTTATTCCACGCTTGGAAAGGCTGTGTTTTTCTATACACCTTTTTTACAGTTATGTAAGTGAGCATTAGATTTTGTTGCTCTGATGCTGTAGTATGCTTTTTTGAAGCAGGCTGATTTATTCTCTAAATGTTATACCAATTTGATGTTGTCTTTTTTTCAAGTAAAAGTCAGGTTATCCACTTTAT
ATGACAGGTGGCAAAAAGCATTTACGTGCATGGCAGAGAGATTCAGCTGAGGAGATTCATGCTGCTTCTAGGCTGTCTAAAACCTTCTCAAAGAAATGAAAAACAACAGCGAACAGTTTGTTATATGGCTG
Intron 3 GTCAGTGATT ... CTTTGTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.33 | 42 | 48 | 5 |
| A2 | 56.25 | 28 | 36 | 2 |
| A3 | 48 | 39 | 36 | 7 |
| A4 | 46.88 | 17 | 15 | 9 |
| A5 | 47.22 | 19 | 17 | 0 |
| A6 | 60.98 | 16 | 25 | 7 |
| A7 | 55.45 | 45 | 56 | 8 |
| A8 | 50 | 12 | 12 | 8 |
| A9 | 47.27 | 29 | 26 | 2 |
| A10 | 55.56 | 40 | 50 | 7 |
>TRINITY_DN120710_c0_g3_i10 from sample A3 / Example spliced isoformAGGGGCACCCAAACCCTTCTTCCACCATTAACGAATAAAAACTGCGATAGGTAAATGGTCTTTATCACATAGTTTCTTTCTCTACCAGGCGCACATATCATCGACTTTCCGGTACGAATCAATTTTCTTTATAGACGATGCATACTCTCAATCGAGAAATTTGTGGGTGTGCTTCTCTGCTACAACCACGTATGGATAGT
CTGTTCTTTGCCACTGGTTCTTCTGTAAGATTCTCACCATCATTTTGCTTGCCTTTGAGGCCAGTAATCAAACCAAACCCATTTCATCTGTATTCTCACAAGCTACACATTCAGCACATTGGATTTTATGGAGCTGCCAATCCACAGAGCTCTCATATTCGACCGCAGCTGAATTACTCGAGGATTTCCAGACAAGATAC
ACCAGCAGCGAATCAAGCAGCAACATGTGGGGATCTTTGTACTAGTGTTATTGGGCTGTGTGACACAGTTGTGGGAGTTTTGGGTGGAGGTCAGTTGGGCCGGATGCTTTGTCAGGCAGCCTCAAAGATGGGCGTGAAGGTAGCAGTACTGGATCCTTTGGAAAACTGCCCTGCAAGTGCTCTTGCCTACAAGCATGTTG
TAGGCAGTTTCAGGGACACAAATGCAGTTCAAGAATTTGCAAAAGGGTGTGGGGTATTGACTGTAGAAATAGAGCACGTGGATGTTGAGACACTGGAAATGCTTGAAGAACAAGGAGTGGATTGCCAACCCAATAGTTGGACTATTCGGCTTATCCAACTGCAAATCAGTTGCAGAGGTTGAACCTTTGCCTCTAATCCA
TTATGAGAACAAATTAGTGCTATCATCAAAGTGTTTGCAGCTCAACAAACCAGTTGCAGAGGTTGAAACTTTGCCTCTAATCCATTATAGGAACAAATTGGTGCTACCATCAAGGTGTCTACATTCATTCACATTTCATGCCTTTTTAAGACTGCAGAATGAAGATTCATTTTCTTTGGAGTTTCTTAGATACCGTATGT
TATTTTACCAAAGAAAGAGCAAACTAATGCTAAACGAGAGGCTGCATCTATTCAGATTTTATGTCTTATAAGCTTGTTTTGCAACTGTTTTGAAGAATGAGATGCCTTAGTTCTTCTTTAATATGGTAATTTTTACTGGGAAATGCATTGTTATCATGTTCTCCTAGTCAAACTGCAATCCCTTGTGAAAATTAAGAATC
ACAAATGCAATAAAATGATACAGTTTCAGCAGCATAACATCTTCAAGAGAATGGAATATTGGAAATCAAAGGACCTAAACACTGAAAAACATATCACAAGAGAAACGGAGCTGCAAAAACAAAGACAAGGAGCTGCAAGGATGAGGCATGATTTCAGCGGCATAACGTAACAAAAATAATTTTTTATTAACGAGGACTGA
ATTGAATATATAAAGGAAGCATCGGAAATTTCCACGCAACAAGACTTTAAATTGTTTAAACCACAAGGAATAGAACTATTTATTTATAGGCCAATGACACTATTATTTTAACATTTTCTCTAACTGCCTCTCAGTAATGCTAAGGGGTAGTCGGACATCAGTTCACCTAGGTTTAGAACTTAAAGACAATAGGACATTAG
AACACTTGACATAAACTTAGGATTATGAATATAAGAACTTTTTGTCTTTGAAATGTATATTATGTTTACAGCAAGATAAAAAGCACCTTGCACAAAATTAAATATCCCAGTAAGAGAAACATGGGATGCATGTAAGTTGGAAATAAATAAACACAAATGCGGTTCCGAATAACCAGTTCTTGTCAACAGTCTGCCCAAGC
TGCAACATGAGTTTAAAAATTTAATATGGCTGCAACCTTTGTTTTGCCTCTTTTATGACCGAGTTCAGGATGTTTTAGTTTCTTCTACAGCGTACTATGATTCTGTATTCTTCTACAACTCATGACATGATCTTAATAGAAATCACCAATATTGACCAATTTAACATTATGAAGGCAAGGAAGTGACCATGTTATTGATA
AGATCACAAGAGAACGAGGACATTGAATGGAACCAAACAGCCAACCCCAAAACCTGCAAAAGTAAAGGAGAAAACAATGCTAAACAAGTGTGCTAGAGCTGTCCAAAAGGATGCGTTAGAGAGAGAAAAACACAGCTATAGAACAAGAGAACACCAAAGATATAGTCCCTATATGTCACTTGTATAAAAGAATGCCGCCT
GTAGGCTAAAGACTGATCAGAAGATCACATGATCACACCAGG
>TRINITY_DN120710_c0_g3_i12 from sample A3 / Example unspliced isoform:AGGGGCACCCAAACCCTTCTTCCACCATTAACGAATAAAAACTGCGATAGGTAAATGGTCTTTATCACATAGTTTCTTTCTCTACCAGGCGCACATATCATCGACTTTCCGGTACGAATCAATTTTCTTTATAGACGATGCATACTCTCAATCGAGAAATTTGTGGGTGTGCTTCTCTGCTACAACCACGTATGGATAGT
CTGTTCTTTGCCACTGGTTCTTCTGTAAGATTCTCACCATCATTTTGCTTGCCTTTGAGGCCAGTAATCAAACCAAACCCATTTCATCTGTATTCTCACAAGCTACACATTCAGCACATTGGATTTTATGGAGCTGCCAATCCACAGAGCTCTCATATTCGACCGCAGCTGAATTACTCGAGGATTTCCAGACAAGATAC
ACCAGCAGCGAATCAAGCAGCAACATGTGGGGATCTTTGTACTAGTGTTATTGGGCTGTGTGACACAGTTGTGGGAGTTTTGGGTGGAGGTCAGTTGGGCCGGATGCTTTGTCAGGCAGCCTCAAAGATGGGCGTGAAGGTAGCAGTACTGGATCCTTTGGAAAACTGCCCTGCAAGTGCTCTTGCCTACAAGCATGTTG
TAGGCAGTTTCAGGGACACAAATGCAGTTCAAGAATTTGCAAAAGGGTGTGGGGTATTGACTGTAGAAATAGAGCACGTGGATGTTGAGACACTGGAAATGCTTGAAGAACAAGGAGTGGATTGCCAACCCAATAGTTGGACTATTCGGCTTATCCAAgtcagtgatttcctctataaatattgccattgcttgatctct
tttatctgcaatgttccaggtcatactaatgatggcctatataatttctttgttaagCTGCAAATCAGTTGCAGAGGTTGAACCTTTGCCTCTAATCCATTATGAGAACAAATTAGTGCTATCATCAAAGTGTTTGCAGCTCAACAAACCAGTTGCAGAGGTTGAAACTTTGCCTCTAATCCATTATAGGAACAAATTGG
TGCTACCATCAAGGTGTCTACATTCATTCACATTTCATGCCTTTTTAAGACTGCAGAATGAAGATTCATTTTCTTTGGAGTTTCTTAGATACCGTATGTTATTTTACCAAAGAAAGAGCAAACTAATGCTAAACGAGAGGCTGCATCTATTCAGATTTTATGTCTTATAAGCTTGTTTTGCAACTGTTTTGAAGAATGAG
ATGCCTTAGTTCTTCTTTAATATGGTAATTTTTACTGGGAAATGCATTGTTATCATGTTCTCCTAGTCAAACTGCAATCCCTTGTGAAAATTAAGAATCACAAATGCAATAAAATGATACAGTTTCAGCAGCATAACATCTTCAAGAGAATGGAATATTGGAAATCAAAGGACCTAAACACTGAAAAACATATCACAAGA
GAAACGGAGCTGCAAAAACAAAGACAAGGAGCTGCAAGGATGAGGCATGATTTCAGCGGCATAACGTAACAAAAATAATTTTTTATTAACGAGGACTGAATTGAATATATAAAGGAAGCATCGGAAATTTCCACGCAACAAGACTTTAAATTGTTTAAACCACAAGGAATAGAACTATTTATTTATAGGCCAATGACACT
ATTATTTTAACATTTTCTCTAACTGCCTCTCAGTAATGCTAAGGGGTAGTCGGACATCAGTTCACCTAGGTTTAGAACTTAAAGACAATAGGACATTAGAACACTTGACATAAACTTAGGATTATGAATATAAGAACTTTTTGTCTTTGAAATGTATATTATGTTTACAGCAAGATAAAAAGCACCTTGCACAAAATTAA
ATATCCCAGTAAGAGAAACATGGGATGCATGTAAGTTGGAAATAAATAAACACAAATGCGGTTCCGAATAACCAGTTCTTGTCAACAGTCTGCCCAAGCTGCAACATGAGTTTAAAAATTTAATATGGCTGCAACCTTTGTTTTGCCTCTTTTATGACCGAGTTCAGGATGTTTTAGTTTCTTCTACAGCGTACTATGAT
TCTGTATTCTTCTACAACTCATGACATGATCTTAATAGAAATCACCAATATTGACCAATTTAACATTATGAAGGCAAGGAAGTGACCATGTTATTGATAAGATCACAAGAGAACGAGGACATTGAATGGAACCAAACAGCCAACCCCAAAACCTGCAAAAGTAAAGGAGAAAACAATGCTAAACAAGTGTGCTAGAGCTG
TCCAAAAGGATGCGTTAGAGAGAGAAAAACACAGCTATAGAACAAGAGAACACCAAAGATATAGTCCCTATATGTCACTTGTATAAAAGAATGCCGCCTGTAGGCTAAAGACTGATCAGAAGATCACATGATCACACCAGG
Intron 4 GTTGGTTGTT ... GGATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.18 | 67 | 0.3 | 18 |
| A2 | 28.38 | 53 | 1.3 | 21 |
| A3 | 28.57 | 55 | 0.6 | 22 |
| A4 | 32.86 | 47 | 2 | 23 |
| A5 | 41.94 | 18 | 0 | 13 |
| A6 | 21.59 | 69 | 1.1 | 19 |
| A7 | 30.24 | 203 | 1.3 | 88 |
| A8 | 25.76 | 147 | 3 | 51 |
| A9 | 26.74 | 137 | 0.3 | 50 |
| A10 | 30.06 | 121 | 0 | 52 |
>TRINITY_DN131982_c3_g1_i1 from sample A1 / Example spliced isoformTAACGAATAAAAACTGCGATAGGTAAATGGTCTTTATCACATAGTTTCTTTCTCTACCAGGCGCACATATCATCGACTTTCCGGTACGAATCAATTTTCTTTATAGACGATGCATACTCTCAATCGAGAAATTTGTGGGTGTGCTTCTCTGCTACAACCACGTATGGATAGTCTGTTCTTTGCCACTGGTTCTTCTGTAA
GATTCTCACCATCATTTTGCTTGCCTTTGAGGCCAGTAATCAAACCAAACCCATTTCATCTGTATTCTCACAAGCTACACATTCAGCACATTGGATTTTATGGAGCTGCCAATCCACAGAGCTCTCATATTCGACCGCAGTTGAATTACTCGAGGATTTCCAGACAAGATACACCAGCAGCGAATCAAGCAGCAACATGT
GGGGATCTTTGTACTAGTGTTATTGGGCTGTGTGACACAGTTGTGGGAGTTTTGGGTGGAGGTCAGTTGGGCCGGATGCTTTGTCAGGCAGCCTCAAAGATGGGCGTGAAGGTAGCAGTACTGGATCCTTTGGAAAACTGCCCTGCAAGTGCTCTTGCCTACAAGCATGTTGTAGGCAGTTTCAGGGACACAAATGCAGT
TCAAGAATTTGCAAAAGGGTGTGGGGTATTGACTGTAGAAATAGAGCACGTGGATGTTGAGACACTGGAAATGCTTGAAGAACAAGGAGTGGATTGCCAACCCAATAGTTGGACTATTCGGCTTATCCAAGACAAGTATTTGCAAAAGATTCACTTTAGCCAGCATGATGTTCCCCTCCCAGATTTTATGCAGATTGATC
GCTTTGAAAGTGCAGAGAAGGCAGGTGATTTGTTTTCCTATCCTTTTGTGATCAAAAGTAGGCGACTTGCTTATGATGGGCGAGGAAATGCTGTTGTATATTGCAAAGAGGACATAACTGTAGCTGTGTCAGCATTAGGAGGGTTTGAGCGTGGCCTGTATGCTGAGAAGTGGGCACCCTTTATCAAGGAGCTAGCAGTT
ATTTTGGCAAGAGGACGGGATGGTTCTGTTTGTTGTTTTCCAGTGGTTGAAACCACCCACAAGGATAATATTTGCCATATGGTGGAGGCACCGGCTGATGTGTCAACAGAAATAATAAAGGACGCTGTTCGTGTTGCTGAAAAAGCTGTTAGCTCTCTGAAAGGGGCTGGAGTCTTTGCTGTTGAACTCTTTTTGACTGT
AGATGGTCAGATTTTACTGAATGAAGTGGCTCCTAGACCCCACAACAGTGGTCATCATACAATTGAAGCATGTTATGTCTCACAATTTGAGCAGCATTTGCGAGCTGTTCTTGGTCTTCCACTTGGTGATACATCTATGAAAGTACCAGCTGCCATTATGTATAATTTGCTTGGTGAAGAAGAGGGAGAAGAAGGTTTCT
CTATAGCCCATCAACTCATGAGAAAGGCTGTATCAGTTCCTGGTGCAAGTGTTCACTGGTATGAGAAACCAGAAATGAGAAAGCAGCGTAAGATGGGCCATATCACTGTTGTAGGACCTTCCGTGGACATAGTTAAAGCACGCATTAAATCAATAATATCTGGAGATAGTCAGGCTGAAATCTTTGGCAATAAAAGTACA
TGGTATCCAGAGTCATCTACCAAAACTTCAAGAAGGGATTGGGCAGTCAGATCTGGAAATGGTAATTCAGGCATTTCACATGTTGGCATTATAATGGGTTCAGATTCTGATCTCCCTGTCATGAAAGATGCAGCAGAGGTTCTTGAATCATTTCAGGTTCCATATGAGATAACCATTGTATCTGCTCATCGGACACCTGA
AAGAATGGTAGCTTATGCTCAGCAGGCTCATGAAAGAGGTATTAAGGTCATCATTGCTGGTGCAGGTGGTGCAGCACATCTGCCCGGTATGGTTGCTGCAATGACCCCACTTCCTGTTATTGGTGTCCCAGTCAGGGCCTCATCATTGGATGGAATGGATTCCTTGCTGTCAATTGTTCAGATGCCTAGAGGTGTCCCTG
TGGCTACTGTTGCAATTCAAAATGCCACAAATGCTGGGCTATTGGCAATCCGGATACTGGGATCCACAGATTCCAACCTACAAGAAAGAATAAGCCAATACCAGATTGATATGAAAGAAACAGTATTGAAGAAGGCAGAGAAGTTAGAAACAGGAGGATGGAAAGCTTATCTTGCTTAGGCTTCATTGGATGCAAAGTGG
ATTATGTGAGCCTCACAATCGAGAATTCTTTTGTGTGATTTAATGTTCAAGAGCTTCACTTGAAGAAATGTAAAATATCTCTGCCTCAAGTATGCATGGAAGTGCACCAGTGAAGCATGGTTCATGTACTATATCGATATGATCTTGTTAATGCTTCCAAGTTCAATGAGCGGTGAGACAGAAAGGCAACAATAGTTAAA
TTTCACATCCATCTGTGCTCTAATGGAATCAGCTCCATTTGCATAGAAATGTAGAATTTCTTTGCACTTTCCCACTTTGTATTGTCAAATCCTTCAATTGAAAGTTCGTCTCCTGGTTATCAGTAAATTTCCACCAATTTTAAAATGAGGTCTTCTGATCGAAGTAATATTACTTTTACCGATTACAGAGATAAAAATAG
GGTTGAGCATCTCTCTCGTAAATACTAAATTTTGACTTGTCAGAGTATAAATATTGTCTTCTGTAGCGAATTTTGAATCAATCTGGTTTAGCGGTGCATATCAACATGAAATTGTTGATAATGTTTTTCAGTTGAGAGGTACTCTCATGTCTCTGGCATACAATATTGTATAAAGTTTTACAGGTAATTTCAGGGATTTC
CAGGTGGTTTAAAACATTTTCTTAGAGGTTACGTATTCAAATTCAGAGAGGGTCGCTTATATACATCTATATTAAGTAGTCAAATCGTTGCTTGGAGGGGTTCAGTGTCCCACAAACGAAGGCAAGTCTCATATATCAATTCGGTGTTTGGATAGAATGTGACCTTAAAATTAGAATGTGATCATTATTATAAAATTATT
GTTTTTTATGACCTGAAAGCAAAAATCTTGTCAGAATTCATTGCCTTCCTACAAACTTGTACCAACTTGCACTTGTGTGAGGTACTGATATTTTGTTTATACTAAAAGTGAGAATGCAAACAAATATGAAATACTTCTTGGACATTGTTATTTAGAGTTGTATTTGTACATACCCTATTGCAATGCATGTCTTCTATGCA
TTAAATTGTGTATTCC
>TRINITY_DN131982_c3_g1_i6 from sample A1 / Example unspliced isoform:AATCATTTCAGGTTCCATATGAGgttggttgttatgtttaccgttttataaaaaatttaaaataaaataatgtcaaagagattgggaaaaagagaggcaacgagatctggaacttcacactctgacaaatagttgagcttgggatttgcagATAACCATTGTATCTGCTCATCGGACACCTGAAAGAATGGTAGCTTATG
CTCAGCAGGCTCATGAAAGAGGTATTAAGGTCATCATTGCTGGTGCAGGTGGTGCAGCACATCTGCCCGGTATGGTTGCTGCAATGACCCCACTTCCTGTTATTGGTGTCCCAGTCAGGGCCTCATCATTGGATGGAATGGATTCCTTGCTGTCAATTGTTCAGATGCCTAGAGGTGTCCCTGTGGCTACTGTTGCAATT
CAAAATGCCACAAATGCTGGGCTATTGGCAATCCGGATACTGGGATCCACAGATTCCAACCTACAAGAAAGAATAAGCCAATACCAGATTGATATGAAAGAAACAGTATTGAAGAAGGCAGAGAAGTTAGAAACAGGAGGATGGAAAGCTTATCTTGCTTAGGCTTCATTGGATGCAAAGTGGATTATGTGAGCCTCACA
ATCGAGAATTCTTTTGTGTGATTTAATGTTCAAGAGCTTCACTTGAAGAAATGTAAAATATCTCTGCCTCAAGTATGCATGGAAGTGCACCAGTGAAGCATGGTTCATGTACTATATCGATATGATCTTGTTAATGCTTCCAAGTTCAATGAGCGGTGAGACAGAAAGGCAACAATAGTTAAATTTCACATCCATCTGTG
CTCTAATGGAATCAGCTCCATTTGCATAGAAATGTAGAATTTCTTTGCACTTTCCCACTTTGTATTGTCAAATCCTTCAATTGAAAGTTCGTCTCCTGGTTATCAGTAAATTTCCACCAATTTTAAAATGAGGTCTTCTGATCGAAGTAATATTACTTTTACCGATTACAGAGATAAAAATAGGGTTGAGCATCTCTCTC
GTAAATACTAAATTTTGACTTGTCAGAGTATAAATATTGTCTTCTGTAGCGAATTTTGAATCAATCTGGTTTAGCGGTGCATATCAACATGAAATTGTTGATAATGTTTTTCAGTTGAGAGGTACTCTCATGTCTCTGGCATACAATATTGTATAAAGTTTTACAGGTAATTTCAGGGATTTCCAGGTGGTTTAAAACAT
TTTCTTAGAGGTTACGTATTCAAATTCAGAGAGGGTCGCTTATATACATCTATATTAAGTAGTCAAATCGTTGCTTGGAGGGGTTCAGTGTCCCACAAACGAAGGCAAGTCTCATATATCAATTCGGTGTTTGGATAGAATGTGACCTTAAAATTAGAATGTGATCATTATTATAAAATTATTGTTTTTTATGACCTGAA
AGCAAAAATCTTGTCAGAATTCATTGCCTTCCTACAAACTTGTACCAACTTGCACTTGTGTGAGGTACTGATATTTTGTTTATACTAAAAGTGAGAATGCAAACAAATATGAAATACTTCTTGGACATTGTTATTTAGAGTTGTATTTGTACATACCCTATTGCAATGCATGTCTTCTATGCATTAAATTGTGTATTCC