NA ----> NA
Intron 1 GTATATTTTG ... CTGCACGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 21 | 9 | 6 |
| A2 | 22.33 | 40 | 12 | 11 |
| A3 | 24.39 | 31 | 12 | 8 |
| A4 | 32.67 | 34 | 5 | 28 |
| A5 | 46.15 | 7 | 5 | 7 |
| A6 | 18.39 | 71 | 16 | 16 |
| A7 | 20.88 | 108 | 24 | 33 |
| A8 | 20.81 | 59 | 16 | 15 |
| A9 | 24.42 | 65 | 19 | 23 |
| A10 | 25.49 | 114 | 38 | 40 |
>TRINITY_DN97375_c0_g1_i2 from sample A5 / Example spliced isoformTGTGAACGTTCTCAATAAAATCCTCATCCCGGACAAAGCTCTGTAGCGATTCGAACCTTTTACTGCACAGCAATTTGTCCGCATATTACTGTATACGATATTGAATTGAACTAGCATTGTCGCGAGTACGCAGGCGCGATGGAGGAGCCAGAGAGAAGAAAAGGCGAACGCAAGAAACGCGTGTTTGGCGACAACACCCT
TAAGCATTTGGAGCATCTTCGCAAACAAGCTCGAGCATTGACTGGAGAAGTTAATTTTGAGCAAGAGGATTTGTGCTTGGAGACCACACGCGTTAGATTATCCAGCATTCTTAGAAGACATGAACAACTTAAAGAGAATCTAGCAAGGGAGCCTGAAAAGAGTGTTCATGAGTGCCTGCAACAAGAATTTGAAGCTGCAA
GAATGGCACAAACTCAGGAGATATGTTTGGATGCCGATGATTGGAATGATGGAGTTCTTGCGACAATTAGAGAACGGGTCCATATAGAAGCTGAGGCAAGAGCAACAAAGGGTTACATTGATATCAAACATGAGCAAATTATTCGTGAGAAAATTATTTACAAGATTGGGAATAAGATTGTCTGTGTTTTGGAAGGGTCC
AGGATTGGCATACAGTATGACACGTCCTTTGCAGGGGAACACTGCGATATTTACTATTGTGTGTTAGAAAGCAGGTCCTTCCTGCAAAAGATGCATGTCAGTGAACACACAATTCCATTTTTTCTGCCCCTCGGTGAGGCAGAAAATGAATTCCTGTCTTCAGATGTGATGAAGTTTATCGATTACGTTGGAGAAATGTT
ACAAGCATATATAGACCGGAGAGAACAGGTTCGTCTTCTTAAAAAGTTATATGTTTACCAGATTGGAGAACTTTATCATAGCCTGGCTTTTGATATGATTGAATTTGTGATGGAGGAATTCAATTGCAAGGTTACGGTTAGTCTTTCTTATGAAGATATGTGCTCAGAGTTGCCAACTCGAAGCAAAGTACTTGCATGGC
CTCTTCTCTATTCAAAATCCATGGAAGGAGGTATTGGGAGACAAGGCTATAGATCATGGCCATCTAATCTTCCATATGCAGAAGATGCTTTGAGGACAATAAGCTTACCCCAGGCATATGCAGAGATTGGACTCAATTTGCAAGGCACTCTACGACATATTTTTCCATCTTCAGGAGCACTTCCAGTTCGCTCTTCCGGA
GCAGACTAGGCATCTCTCTGTTGATACTGCAGCACAGATCCTTGGATTGTTGCCTGTGAATGTGCTGTAACTTTATTGACCTTTGGCCATTACAGAGTTAAAGTAATTCATTGATAGAGAATGTGGTGAGGGAATTTTCCTTTGACTGTAAAATATTTGATTGAAAACAAATTAGGCAGGTGAATCTGATTTTATTTTTA
ACATATATATGTTGAATCTATGCAAGCATAACATGCATTGCTACTGTATTCATAAATCATTCCAAGTCATATTCTGATCTTAATTAAAATGGAGAATCTTTATTACATGTCAGGATGAAAGGCATAACGACTTGTTTTATGAAGCCCGGTGATGACGTGCACACTTTGCCACT
>TRINITY_DN97375_c0_g1_i1 from sample A5 / Example unspliced isoform:TGTGAACGTTCTCAATAAAATCCTCATCCCGGACAAAGCTCTGTAGCGATTCGAACCTTTTACTGCACAGCAATTTGTCCGCATATTACTGTATACGATATTGAATTGAACTAGCATTGTCGCGAGTACGCAGGCGCGATGGAGGAGCCAGAGAGAAGAAAAGGCGAACGCAAGAAACGCGTGTTTGGCGACAACACCCT
TAAGCATTTGGAGCATCTTCGCAAACAAGCTCGAGCATTGACTGGAGAAGTTAATTTTGAGCAAGAGGATTTGTGCTTGGAGACCACACGCGTTAGATTATCCAGCATTCTTAGAAGACATGAACAACTTAAAGAGAATCTAGCAAGGGAGCCTGAAAAGAGTGTTCATGAGTGCCTGCAACAAGAATTTGAAGCTGCAA
GAATGGCACAAACTCAGGAGATATGTTTGGATGCCGATGATTGGAATGATGGAGTTCTTGCGACAATTAGAGAACGGgtatattttgcagcacttttttaccaattgctgatctagctttgggctaatcatcaacattttccatacctttttagtttttaggctttaactgagtgtaatgctatgtgaattcttactttt
atgtggaaacaagtagttaatctttttctgaaaatctgcctattaaattgtattgtatcttcataaattatatccatttggatagctcttctgtgaagcagtatttaacttgaaattcctaagttggcattggaggctatttatgattgaatgggctatatatgtctaatctatttcagaagatgtcgtcttcaaaattc
aagaccatatgataccttgtttatgtggcataacttcatgtttgattcaagattaacactttgcaaaatttgtctccttgcaaccactgcacgcagGTCCATATAGAAGCTGAGGCAAGAGCAACAAAGGGTTACATTGATATCAAACATGAGCAAATTATTCGTGAGAAAATTATTTACAAGATTGGGAATAAGATTGT
CTGTGTTTTGGAAGGGTCCAGGATTGGCATACAGTATGACACGTCCTTTGCAGGGGAACACTGCGATATTTACTATTGTGTGTTAGAAAGCAGGTCCTTCCTGCAAAAGATGCATGTCAGTGAACACACAATTCCATTTTTTCTGCCCCTCGGTGAGGCAGAAAATGAATTCCTGTCTTCAGATGTGATGAAGTTTATCG
ATTACGTTGGAGAAATGTTACAAGCATATATAGACCGGAGAGAACAGGTTCGTCTTCTTAAAAAGTTATATGTTTACCAGATTGGAGAACTTTATCATAGCCTGGCTTTTGATATGATTGAATTTGTGATGGAGGAATTCAATTGCAAGGTTACGGTTAGTCTTTCTTATGAAGATATGTGCTCAGAGTTGCCAACTCGA
AGCAAAGTACTTGCATGGCCTCTTCTCTATTCAAAATCCATGGAAGGAGGTATTGGGAGACAAGGCTATAGATCATGGCCATCTAATCTTCCATATGCAGAAGATGCTTTGAGGACAATAAGCTTACCCCAGGCATATGCAGAGATTGGACTCAATTTGCAAGGCACTCTACGACATATTTTTCCATCTTCAGGAGCACT
TCCAGTTCGCTCTTCCGGAGCAGACTAGGCATCTCTCTGTTGATACTGCAGCACAGATCCTTGGATTGTTGCCTGTGAATGTGCTGTAACTTTATTGACCTTTGGCCATTACAGAGTTAAAGTAATTCATTGATAGAGAATGTGGTGAGGGAATTTTCCTTTGACTGTAAAATATTTGATTGAAAACAAATTAGGCAGGT
GAATCTGATTTTATTTTTAACATATATATGTTGAATCTATGCAAGCATAACATGCATTGCTACTGTATTCATAAATCATTCCAAGTCATATTCTGATCTTAATTAAAATGGAGAATCTTTATTACATGTCAGGATGAAAGGCATAACGACTTGTTTTATGAAGCCCGGTGATGACGTGCACACTTTGCCACT
Intron 2 GTATTTTGAT ... TCTTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 28 | 10 | 7.7 |
| A2 | 26.19 | 31 | 11 | 8 |
| A3 | 37.5 | 15 | 9 | 7.1 |
| A4 | 15 | 17 | 3 | 4.3 |
| A5 | 15.38 | 11 | 2 | 3.6 |
| A6 | 24.74 | 73 | 24 | 10.3 |
| A7 | 21.6 | 98 | 27 | 14.6 |
| A8 | 15.48 | 71 | 13 | 15.4 |
| A9 | 18.18 | 81 | 18 | 18 |
| A10 | 20.59 | 108 | 28 | 33.7 |
>TRINITY_DN111143_c0_g2_i2 from sample A2 / Example spliced isoformGTGAACGTTCTCAATAAAATCCTCATCCCGGACAAAGCTCTGTAGCGATTCGAACCTTTTACTGCACAGCAATTTGTCCGCATATTACTGTATACGATATTGAATTGAACTAGCATTGTCGCGAGTACGCAGGCGCGATGGAGGAGCCAGAGAGAAGAAAAGGCGAACGCAAGAAACGCGTGTTTGGCGACAACACCCTT
AAGCATTTGGAGCATCTTCGCAAACAAGCTCGAGCATTGACTGGAGAAGTTAATTTTGAGCAAGAGGATTTGTGCTTGGAGACCACACGCGTTAGATTATCCAGCATTCTTAGAAGACATGAACAACTTAAAGAGAATCTAGCAAGGGAGCCTGAAAAGAGTGTTCATGAGTGCCTGCAACAAGAATTTGAAGCTGCAAG
AATGGCACAAACTCAGGAGATATGTTTGGATGCCGATGATTGGAATGATGGAGTTCTTGCGACAATTAGAGAACGGGTCCATATAGAAGCTGAGGCAAGAGCAACAAAGGGTTACATTGATATCAAACATGAGCAAATTATTCGTGAGAAAATTATTTACAAGATTGGGAATAAGATTGTCTGTGTTTTGGAAGGGTCCA
GGATTGGCATACAGTATGACACGTCCTTTGCAGGGGAACACTGCGATATTTACTATTGTGTGTTAGAAAGCAGGTCCTTCCTGCAAAAGATGCATGTCAGTGAACACACAATTCCATTTTTTCTGCCCCTCGGTGAGGCAGAAAATGAATTCCTGTCTTCAGATGTGATGAAGTTTATCGATTACGTTGGAGAAATGTTA
CAAGCATATATAGACCGGAGAGAACAGGTTCGTCTTCTTAAAAAGTTATATGTTTACCAGATTGGAGAACTTTATCATAGCCTGGCTTTTGATATGATTGAATTTGTGATGGAGGAATTCAATTGCAAGGTTACGGTTAGTCTTTCTTATGAAGATATGTGCTCAGAGTTGCCAACTCGAAGCAAAGTACTTGCATGGCC
TCTTCTCTATTCAAAATCCATGGAAGGAGGTATTGGGAGACAAGGCTATAGATCATGGCCATCTAATCTTCCATATGCAGAAGATGCTTTGAGGACAATAAGCTTACCCCAGGCATATGCAGAGATTGGACTCAATTTGCAAGGCACTCTACGACATATTTTTCCATCTTCAGGAGCACTTCCAGTTCGCTCTTCCGGAG
CAGACTAGGCATCTCTCTGTTGATACTGCAGCACAGATCCTTGGATTGTTGCCTGTGAATGTGCTGTAACTTTATTGACCTTTGGCCATTACAGAGTTAAAGTAATTCATTGATAGAGAATGTGGTGAGGGAATTTTCCTTTGACTGTAAAATATTTGATTGAAAACAAATTAGGCAGGTGAATCTGATTTTATTTTTAA
CATATATATGTTGAATCTATGCAAGCATAACATGCATTGCTACTGTATTCATAAATCATTCCAAGTCATATTCTGATCTTAATTAAAAT
>TRINITY_DN111143_c0_g2_i7 from sample A2 / Example unspliced isoform:GTGAACGTTCTCAATAAAATCCTCATCCCGGACAAAGCTCTGTAGCGATTCGAACCTTTTACTGCACAGCAATTTGTCCGCATATTACTGTATACGATATTGAATTGAACTAGCATTGTCGCGAGTACGCAGGCGCGATGGAGGAGCCAGAGAGAAGAAAAGGCGAACGCAAGAAACGCGTGTTTGGCGACAACACCCTT
AAGCATTTGGAGCATCTTCGCAAACAAGCTCGAGCATTGACTGGAGAAGTTAATTTTGAGCAAGAGGATTTGTGCTTGGAGACCACACGCGTTAGATTATCCAGCATTCTTAGAAGACATGAACAACTTAAAGAGAATCTAGCAAGGGAGCCTGAAAAGAGTGTTCATGAGTGCCTGCAACAAGAATTTGAAGCTGCAAG
AATGGCACAAACTCAGGAGATATGTTTGGATGCCGATGATTGGAATGATGGAGTTCTTGCGACAATTAGAGAACGGGTCCATATAGAAGCTGAGGCAAGAGCAACAAAGGGTTACATTGATATCAAACATGAGCAAATTATTCGTGAGAAAATTATTTACAAGATTGGGAATAAGATTGTCTGTGTTTTGGAAGGGTCCA
GGATTGGCATACAGTATGACACGTCCTTTGCAGGGGAACACTGCGATATTTACTATTGTGTGTTAGAAAGCAGGTCCTTCCTGCAAAAGATGCATGTCAGTGAACACACAATTCCATTTTTTCTGCCCCTCGGTGAGGCAGAAAATGAATTCCTGTCTTCAGATGTGATGgtattttgatacccatcttatgctgaagtt
attttgatcgtttacacttttgtagtgcatcctagattcttgttttaataaaatccattttaaaaagggaaaaggcttctaacttcccatggaatcctggccattttaaatgctcttctacagAAGTTTATCGATTACGTTGGAGAAATGTTACAAGCATATATAGACCGGAGAGAACAGGTTAGCTGCCAATATGAAGT
ATTAGTCAGTAGATTAATCATTTTTCATACAAAGAAATCAAGTTCTTCATATGCATATCAAAATTATTTGTTCTGTGTTTTGCATTGTGAGTGG