NA ----> NA
Intron 1 GTTTGTTATG ... TGATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.18 | 196 | 35 | 58 |
| A2 | 16.89 | 182 | 24 | 50 |
| A3 | 18.18 | 162 | 26 | 46 |
| A4 | 20.66 | 144 | 21 | 54 |
| A5 | 17.27 | 115 | 18 | 30 |
| A6 | 17.96 | 1679 | 259 | 476 |
| A7 | 18.38 | 1161 | 163 | 360 |
| A8 | 17.65 | 1222 | 161 | 363 |
| A9 | 18.32 | 1264 | 191 | 376 |
| A10 | 16.63 | 857 | 133 | 209 |
>TRINITY_DN93782_c0_g1_i1 from sample A4 / Example spliced isoformTCCTGGTCATCGTGGGGTGTCTTTGGGTGTGATTTTTGGATATATTTCATTCCTGGTGATCGCGGGGTGTTATTGGGTGTGTGATTTTCGATACATTTCTCTGTGGCTATCGTGGGGGTGTTTTTGGGTGTGTAATTTTGGAGGATTGTGGAGTTGTGAAGAATGGAGGGTTCACGACTTCTATCTCTGCTGTTGGTTTT
TAGTGGCCTGCTTTGCATAGCCTTGGCAGCTGAAACTCCATTCATGGTGGTACACAAGAAGGTCTCTTTGAACAAAGGGAAATCTGATACAGAGCGTGTCACAGTCTCCATCGATCTTTACAATAGAGGATCTACTACAGCCTATGATGTGAGTCTCATCGATGATAGTTGGCCCAGTGACACATTCAGTCTTGTCAGTG
GTAACACGTCCTTTACTTGGGACAAACTTGATGTTGGTGCTTCTGTTTCTCACACCTTTGTCCTGGAGTCAAATGTCAAAGGGCTTTTCTATGGTAGACCTGCAGTGGTGAAGTACCGAGTGGCAGCCAAGTCTGTGTTACAGGAGGCTTATTCAACTCCGATTCCGCCTCTTGACATACTTGCAGAAAGACCACCAGAA
AAGAAGTATGAATGGGCAAAGAAACTGGCAGCCAAGTATGGACCACTTACATCCGTCCTTTCAATTGTGGGGCTGTTTGTATACTTAATGGTATCTCCATCCAAATCCAGTAATGCTAAATCAAGCAAGAAAAGGCGGTAGACTGTTTATTTATTCATGTTAACTTGACATGGAGAGTCCAAATGTGTTTGGACTATGTT
CTGTGGCCCTTTAGTGGACGCAGTGCTTATGCCATTGAGGGCATTTTTTGGACTTAGGATACAGCCAAATGAAAATTTTCCAGAATTGCAACAATAATATTTTTCTCTACATTCAAATATTCCACATAAGCCCTATAATGTTTCGCTTTACTTTCAGCTTAGGTGCCATTTATCTACAAAAGTTTCTCTACTCTGCATGA
ATAGCGCTT
>TRINITY_DN93782_c0_g1_i2 from sample A4 / Example unspliced isoform:GATAAATCTAAATGGCTTGCAAACTTCTCAATATTCTCATTGTGTTTATGAACCAAGAACAGAACATTACCTTATTAGAAAGAATAAATAATTAGGCTGTCTTTCATGGATGGGTGATCTTGTTGATTTCTGGTTCTCATTGTATTTCATATTTTAATCTTGAAATATTTCATTCCTTGCTGTTTTTGGATTAGAAGCCT
CTAATTTGAAATTGTCATGATTAATTTCAGTACAGCCTATGATGTGAGTCTCATCGATGATAGTTGGCCCAGTGACACATTCAGTCTTGTCAGTGGTAACACGTCCTTTACTTGGGACAAACTTGATGTTGGTGCTTCTGTTTCTCACACCTTTGTCCTGGAGTCAAATGTCAAAGGGCTTTTCTATGGTAGACCTGCAG
TGGTGAAGTACCGAGTGGCAGCCAAGTCTGTGTTACAGgtttgttatgaatagcgcagatgctattttgattttctatattcacactctcttttacaatgcaatttgattctctcttatttttgcaatgttattgtattaatgaagtacttcatgatttgcagGAGGCTTATTCAACTCCGATTCCGCCTCTTGACATAC
TTGCAGAAAGACCACCAGAAAAGAAGTATGAATGGGCAAAGAAACTGGCAGCCAAGTATGGACCACTTACATCCGTCCTTTCAATTGTGGGGCTGTTTGTATACTTAATGGTATCTCCATCCAAATCCAGTAATGCTAAATCAAGCAAGAAAAGGCGGTAGACTGTTTATTTATTCATGTTAACTTGACATGGAGAGTCC
AAATGTGTTTGGACTATGTTCTGTGGCCCTTTAGTGGACGCAGTGCTTATGCCATTGAGGGCATTTTTTGGACTTAGGATACAGCCAAATGAAAATTTTCCAGAATTGCAACAATAATATTTTTCTCTACATTCAAATATTCCACATAAGCCCTATAATGTTTCGCTTTACTTTCAGCTTAGGTGCCATTTATCTACAAA
AGTTTCTCTACTCTGCATGAATAGCGCTT
Intron 2 GTAAGTGCCT ... CTCGTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.52 | 169 | 45 | 37 |
| A2 | 22.44 | 178 | 49 | 54 |
| A3 | 19.63 | 176 | 44 | 42 |
| A4 | 19.8 | 160 | 38 | 41 |
| A5 | 22.54 | 122 | 44 | 27 |
| A6 | 20.87 | 1890 | 500 | 497 |
| A7 | 21.61 | 1302 | 345 | 373 |
| A8 | 20.61 | 1427 | 349 | 392 |
| A9 | 20.82 | 1426 | 362 | 388 |
| A10 | 21.84 | 977 | 260 | 286 |
>TRINITY_DN43050_c0_g4_i2 from sample A6 / Example spliced isoformATAACATTCAATGCTAATGACAACATGACCATTATATAGCCTAGCATTTTATGCTTATATGGAGGCGTAGATATATTTCCTTCCTGGTCATCGTGGGGTGTCTTTGGGTGTGATTTTTGGATATATTTCATTCCTGGTGATCGCGGGGTGTTATTGGGTGTGTGATTTTCGATACATTTCTCTGTGGCTATCGTGGGGGT
GTTTTTGGGTGTGTAATTTTGGAGGATTGTGGAGTTGTGAAGAATGGAGGGTTCACGGCTTCTATCTCTGCTGTTGGTTTTTAGTGGCCTGCTTTGCATAGCCTTGGCAGCTGAAACTCCATTCATGGTGGTACACAAGAAGGTCTCTTTGAACAAAGGGAAATCTGATACAGAGCGTGTCACAGTCTCCATCGATCTTT
ACAATAGAGGATCTACTACAGCCTATGATGTGAGTCTCATCGATGATAGTTGGCCCAGTGACACATTCAGTCTTGTCAGTGGTAACACGTCCTTTACTTGGGACAAACTTGATGTTGGTGCTTCTGTTTCTCACACCTTTGTCCTGGAGTCAAATGTCAAAGGGCTTTTCTATGGTAGACCTGCAGTGGTGAAGTACCGA
GTGGCAGCCAAGTCTGTGTTACAGGAGGCTTATTCAACTCCGATTCCGCCTCTTGACATACTTGCAGAAAGACCACCAGAAAAGAAGTATGAATGGGCAAAGAAACTGGCAGCCAAGTATGGACCACTTACATCCGTCCTTTCAATTGTGGGGCTGTTTGTATACTTAATGGTATCTCCATCCAAATCCAGTAATGCTAA
ATCAAGCAAGAAAAGGCGGTAGACTGTTTATTTATTCATGTTAACTTGACATGGAGAGTCCAAATGTGTTTGGACTATGTTCTGTGGCCCTTTAGTGGACGCAGTGCTTATGCCATTGAGGGCATTTTTTGGACTTAGGATACAGCCAAATGAAAATTTTCCAGAATTGCAACAATAATATTTTTCTCTACATTCAAATA
TTCCACATAAGCCCTATAATGTTTCGCTTTACTTTCAGCTTAGGTGCCATTTATCTACAAAAGTTTCTCTACTCTGCATGAATAGCGCTTAAAAATCTTATCAGCATAGTTTCACTTTTGAGGTAAACAAAGGCACATGGCATATAGTTTAGGGAAATGTTTATTTGAAAATGATTATTCCTCCAAATATTTAGTATAAT
TTAGTGCTGAA
>TRINITY_DN43050_c0_g4_i1 from sample A6 / Example unspliced isoform:ATAACATTCAATGCTAATGACAACATGACCATTATATAGCCTAGCATTTTATGCTTATATGGAGGCGTAGATATATTTCCTTCCTGGTCATCGTGGGGTGTCTTTGGGTGTGATTTTTGGATATATTTCATTCCTGGTGATCGCGGGGTGTTATTGGGTGTGTGATTTTCGATACATTTCTCTGTGGCTATCGTGGGGGT
GTTTTTGGGTGTGTAATTTTGGAGGATTGTGGAGTTGTGAAGAATGGAGGGTTCACGGCTTCTATCTCTGCTGTTGGTTTTTAGTGGCCTGCTTTGCATAGCCTTGGCAGCTGAAACTCCATTCATGGTGGTACACAAGAAGGTCTCTTTGAACAAAGGGAAATCTGATACAGAGCGTGTCACAGTCTCCATCGATCTTT
ACAATAGAGGATCTACTACAGCCTATGATGTGAGTCTCATCGATGATAGTTGGCCCAGTGACACATTCAGTCTTGTCAGTGGTAACACGTCCTTTACTTGGGACAAACTTGATGTTGGTGCTTCTGTTTCTCACACCTTTGTCCTGGAGTCAAATGTCAAAGGGCTTTTCTATGGTAGACCTGCAGTGGTGAAGTACCGA
GTGGCAGCCAAGTCTGTGTTACAGGAGGCTTATTCAACTCCGATTCCGCCTCTTGACATACTTGCAGAAAGACCACCAGAAAAGAAGTATGAATGGgtaagtgccttcaaagactttaaatttcagaaaactatgaatgggttatttatcctctcctccagggaatcggtttgtatttgttttaattttagcattgttga
ttgtgatgctttaatatgaaaggacaatacttatcttattgccttttttgcatggttgcgattccaactcgtgccagGCAAAGAAACTGGCAGCCAAGTATGGACCACTTACATCCGTCCTTTCAATTGTGGGGCTGTTTGTATACTTAATGGTATCTCCATCCAAATCCAGTAATGCTAAATCAAGCAAGAAAAGGCGG
TAGACTGTTTATTTATTCATGTTAACTTGACATGGAGAGTCCAAATGTGTTTGGACTATGTTCTGTGGCCCTTTAGTGGACGCAGTGCTTATGCCATTGAGGGCATTTTTTGGACTTAGGATACAGCCAAATGAAAATTTTCCAGAATTGCAACAATAATATTTTTCTCTACATTCAAATATTCCACATAAGCCCTATAA
TGTTTCGCTTTACTTTCAGCTTAGGTGCCATTTATCTACAAAAGTTTCTCTACTCTGCATGAATAGCGCTTAAAAATCTTATCAGCATAGTTTCACTTTTGAGGTAAACAAAGGCACATGGCATATAGTTTAGGGAAATGTTTATTTGAAAATGATTATTCCTCCAAATATTTAGTATAATTTAGTGCTGAA