sp|Q0GZS3|USP_CUCME ----> UDP-sugar pyrophosphorylase
Intron 1 GTAAATCCCA ... TATGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.93 | 163 | 40 | 57 |
| A2 | 24.05 | 150 | 40 | 55 |
| A3 | 24.07 | 164 | 45 | 59 |
| A4 | 23.16 | 146 | 34 | 54 |
| A5 | 27.27 | 44 | 12 | 21 |
| A6 | 23.44 | 129 | 21 | 58 |
| A7 | 23.08 | 270 | 57 | 105 |
| A8 | 21.91 | 139 | 28 | 50 |
| A9 | 24.64 | 182 | 43 | 76 |
| A10 | 23.3 | 186 | 45 | 68 |
>TRINITY_DN123076_c0_g2_i9 from sample A3 / Example spliced isoformTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCGGACCGGTTTAGTATTTTTCGTTTGAAAAAAGAAATTGTTTGTACCCATCTCACCAATTTTTTTTACTG
TTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGCCATTTCAAGCTTATCTTTATTTATAGTTCCCCACATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACG
GTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTATAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTATTCAAAGACAATCTCTGTTGGGTAAATCTGAATTTATCGGCAATCGCTGTTGGGTAACATGAATTTATTGAATCTATTGATAATCTTTGTTGGTTA
GTCAGAATTATTTGTTGATCTTTGTTGGGTACTACGAATTTATTGACGATCTCTGTTGGGTAGTCTTAATAGATTAATAATCTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCCGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCATTCACTGTTGTTAACCAG
TAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGAT
TTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCAAAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTAACTGCATGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGA
GAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCACCTTCTCTTGAGAAAAATTTAGGGCTTTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTG
ATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTT
GAAGAAGCTGGGATTAGGGAAGCATGTAATGCCGCGTTTGTTCTTGTAGCAGGAGGACTTGGGGAGCGTCTAGGTTATGGTGGTATCAAATTGGCACTAGCTTCAGAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGGAAGCTAGCTGTAAACAAAATGAAGGGAATGTTGA
CAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCAC
ACGGGCATGGAGATGTGCATGCACTGCTTTATTCGAGTGGGCTTCTGCACAAATGGGAAAGTTCAGGCCTGAAATGGGTTTTGTTTTTCCAGGACACTAATGGATTACTCTTCAAGGCAATACCTGCATCCTTAGGTGTAAGTGCAAGCAAGGATTTTCATGTTAATTCTTTGGCTGTTCCTCGTAAAGCCAAAGAAGCA
ATTGGCGGCATTGCTCAACTTACTCATGAAGATGGGAGAAGAATGGTGATAAATGTAGAGTACAACCAACTAGATCCTTTACTTCGAGCCACTGGACATATGGATGGAGATGCTAATGATAAAACAGGATACTCACCATACCCTGGGAATATCAACCAGCTAATACTAAGGCTTGAGCCATATATTGAGGAGCTATCAAA
AACACAAGGTGCTATTACAGAGTTTGTGAACCCAAAGTACAAGGACTCTAGTAAAACATCCTTCAAGTCGTCAACTCGGTTAGAATGTATGATGCAAGACTATCCAAGAACATTGCTTCCCTCAGCTCGAGTTGGATTTACTGTAATGGATACATGGCTTGCTTATGCACCGGTGAAAAACAATCCAGAAGATGCTGCTA
AGGTACCAAAGGGTAATCCTTATCATAGTGCAACAAGTGGAGAAATGGCCATTTATCGGGCACACAGCCAAATTCTCAGGAAGGTGGGTGTTAAGATAGAAGATCCTCAGGTGGGCGTTTTCAATGGACAAGAAGTTGAAGTTTGGCCACGGATTGTGTGGAGCCCAAAGTGGGCTTTAACATTTTCGGATGTGAAGAAA
AAATTGACGGGAAATTGTGAAATATCTCAAAAATCAACCTTGGTTGTGAAGGGCGCAAATATTCACATTCAGGATCTCTCTCTTAATGGGGCATTGATAGTAAATGCCATTGACCAGGCTGAGGTGAAGCTGTCACCTCACGTACAAAATGATGGATGGATTTTTGAACCTGTTGACTATAAGGATAATTCCATGCCAGA
GGAAATTCGGATAAGGGGTTTTGCTATAAAAAAGAATGATCAAACAGTATTGACCTATGATCAGCCTGGAAAATATCGTGTTCACTTCCACAGTGTAAGCTGAATAGAATAAGGCAGTTGGATCATAGGCTTATTCTTCTGCTTTTTAGGTCTTCAAGGAGACTCCTTGAATCTCCATTTTTTGTGTTCATCTTCATGAT
TGTTCTGAATAAAGTCCAGAAAATTTGTGAATCTTGCGGTATCTGGCAGAAGAAGGGAGATATAATTGGCTTCACCAGCCATAGGATGTGCCTGGACTATTGTAGTGTCCAGTGATAACCTTCATTAAAGCAATATGTTTGTAAAAGAGTTATAGCATGTCTTGTGACTATTCTGTTTAGAGAATCTGATGTTGCTCTTT
AGATGCAATTAGTTACTATATGAAGCCATCTAAACGTGAGAGACAAGGTTGGTATGAGAATTCCCATCCCTCTCAAGATTTAAAAAAAAATCTTTTAATCACAAAACTCCCTAAAGATAGTGAGTGTAATAATCCCACGATGACAATAATTGCGAGACATGGGTGGTTTATGGAGTACTCTATGCAGTAAAAGTTGTGCG
AATTTGGAAATTGGTTTTGGTGAGCAAGTACCTGAGTTGATGTGACAGCATACTTCTTTGCTCTAATACCAACATCGCTTAGAGGTTGTTGTTTGCTGTGAGTTTGTTTGCAGGTAACTATTCTCTTCAGAGAATGTGATGTTGCTCTTTAAATGCAATTAGTTTATATTTGAAGCCTAGTAAATGTGAGTATCGCGAGG
TTGGTATTAGAACTCCCACCCCTCACTTCTCCACTTTGATACCAACATCACTTAGAAATTGTTCATGTAACTTGTGAGTTTGCTTACAATTTTTTGTGTTGTTTATATTACGTCTTCTTAAATGCAAGCTTACTAGATGACAATTGCATATCCATTGATAATGATTGTGTCCTACATTAATATGACTACTACTTTTTGAA
TATATAATAAAACACCATAAATGATAT
>TRINITY_DN123076_c0_g2_i3 from sample A3 / Example unspliced isoform:TGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGACCGGTTTTTTGGGTCGGGACGGTTTGTAACCTCTTAGTATAGTATTTTTCGTTTGAAAAAAGAAAT
TGTTTGTACCCATCTCACCAATTTTTTTTACTGTTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGCCATTTCAAGCTTATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCG
TGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTATAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTTTTCAAAGATTAATAAACTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCCGGTGGTTGTCTTCAACAGAAGAGG
AGGGCACACGCTTCAAGGTTTATGGTAAATCATTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACC
CAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCAAAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTAA
CTGCATGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCACCTTCTCTTGAGAAAAATTTAGGGCTTTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGAT
AGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAG
TACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTAATGCCGCGTTTGTTCTTGTAGCAGGAGGACTTGGGGAGCGTCTAGGTTATGGTGGTATCAAAgtaaatcccagtcaaacacattgatgcatttcttgtttgaagttgtgaagaattgcaaat
ttgaaaatgtgctttcaaaaatcatggatgtagtttgtttttgtacacaaggtttcaggattgaattcaagattataaatatttggtatttaattttatatagtcatattctttggactttatataccaacattcttatatggtaagttgagtatgtgaatatgttacagTTGGCACTAGCTTCAGAAACAACAACTGGA
ACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGGAAGCTAGCTGTAAACAAAATGAAGGGAATGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGA
AAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACA
Intron 2 GTAACATGAA ... TGTTGGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.33 | 4 | 8 | 14 |
| A2 | 55.1 | 11 | 12 | 15 |
| A3 | 74.6 | 8 | 19 | 28 |
| A4 | 56.86 | 11 | 11 | 18 |
| A5 | 50 | 5 | 0 | 10 |
| A6 | 50 | 7 | 5 | 9 |
| A7 | 43.4 | 15 | 5 | 18 |
| A8 | 52.94 | 4 | 3 | 6 |
| A9 | 47.06 | 9 | 5 | 11 |
| A10 | 52.94 | 8 | 5 | 13 |
>TRINITY_DN45149_c1_g3_i6 from sample A9 / Example spliced isoformGTTAAATAGATCTCAAGTATCTCCACGGAGTGAGACCGATTTTTAAGAAGTATCTTTCGATTCTTCGCAAGCAATCACCGTAGCTAGAATTGTTTGTCTTTTTGGAGGGTTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTC
GTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGACCGGTTTTTTGGGTCGGGACGGTTTGTAACCTCTTAGTATAGTATTTTTCGTTTGAAAAAAGAAATTGTTTGTACCAATCTCACCAATTTTTTTTACTGTTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAA
GGATTTATGTGGAAGGAAACGCCATTTCAAGCTTATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGG
CCATCACCATTGAGGACACGTCGAGCTCAGATTTTTTCAAAGACAATCTCTGTTGGGTAAATCTGAATTTATCGGCAATCTCTGTTGGTCTTAATAGATTAATAAACTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCCGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGG
TAAATCATTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGT
CATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCAAAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTAACTGCATGCATCTTGCTTTCCTGGTT
TCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAACTTTCCACCGTACGTGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCACCTCCTCTCGAGAAAAATTTAGGGCTTTTGTCTGCAACCCGGATAGAACTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTT
GCTCATTGGCCTGAGCCAGGCGTTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAGCTCAATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGTGGTGTTGTCATT
TGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGGTTAGGGAAGCATGTGATGCTGCATTTGTTCTTGTGGCAGGAGGACTTGGGGAGCGTCTTGGTTATGGTGGTATTAAATTGGCACTGCCTTCAGAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGAAAGGTAGCT
GTAAACAAAATGAAGGAAACGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAA
AAGTATAAAATTCAGACAAAACCACACGGGCATGGAGATGTGCATGCACTGCTTTATTCGAGTGGGCTTCTGCACAAATGGGAAAGTTCAGGCCTGAAATGGGTTTTGTTTTTCCAGGACACTAATGGATTACTCTTCAAGGCAATACCTGCATCCTTAGGTGTAAGTGCAAGCAAGGATTTTCATGTTAATTCTTTGGC
TGTTCCTCGTAAAGCCAAAGAAGCAATTGGCGGCATTGCTCAACTTACTCATGAAGATGGGAGAAGAATGGTGATAAATGTAGAGTACAACCAACTAGATCCTTTACTTCGAGCCACTGGACATATGGATGGAGATGCTAATGATAAAACAGGATACTCACCATACCCTGGGAATATCAACCAGCTAATACTAAGGCTTG
AGCCATATATTGAGGAGCTATCAAAAACACAAGGTGCTATTACAGAGTTTGTGAACCCAAAGTACAAGGACTCTAGTAAAACATCCTTCAAGTCGTCAACTCGGTTAGAATGTATGATGCAAGACTATCCAAGAACATTGCTTCCCTCAGCTCGAGTTGGATTTACTGTAATGGATACATGGCTTGCTTATGCACCGGTG
AAAAACAATCCAGAAGATGCTGCTAAGGTACCAAAGGGTAATCCTTATCATAGTGCAACAAGTGGAGAAATGGCCATTTATCGGGCACACAGCCAAATTCTCAGGAAGGTGGGTGTTAAGATAGAAGATCCTCAGGTGGGCGTTTTCAATGGACAAGAAGTTGAAGTTTGGCCACGGATTGTGTGGAGCCCAAAGTGGGC
TTTAACATTTTCGGATGTGAAGAAAAAATTGACGGGAAATTGTGAAATATCTCAAAAATCAACCTTGGTTGTGAAGGGCGCAAATATTCACATTCAGGATCTCTCTCTTAATGGGGCATTGATAGTAAATGCCATTGACCAGGCTGAGGTGAAGCTGTCACCTCACGTACAAAATGATGGATGGATTTTTGAACCTGTCG
ACTATAAGGATAATTCCATGCCAGAGGAAATTCGGATAAGGGGCTTTGCTATAAAAAAGAATGACCAAACTGTGTTGACCTATGATCAGCCTGGAAAATATTGTGTTCAGTTCCAAAGTGTAAGCTGAATGGAAAGTGTATGATCATAGGCTTATTCTTCTGCTTTTTAAGTCTTCAAGGAGACTCCTTGAATCCCCATT
TTTTGTGTTCATCTTCGTGATTGTTCTGAGTAAAGTCCAGAAAATTTGTGAATCTTGCAGTATCTGGCAGAAGAAGGGAGATATAATTGGCTTCACCAGCCATAGGATGTGCCTGGACTATTGTAGTGTCCAGTGATAACCTTCATTAAAGCAATATGCTATTAAAAGAGTTATAGCATGTCTTGTGAATATTCTGTTTA
GAGAATGTGATGTTGCTAAAGAGAGTGAGTGTAATAATCCACGATGACAATAATGGCGAGACATGGGTGGTTTATGGAGTACTCTATGCACTAAAAGTTGTGCGAATTTGGAAATTGGTTTTGGTGAGCAAGTACCTGAGTTGATGTGACAGCATACTTCTTTGCTCTAATACCAACATC
>TRINITY_DN45149_c1_g3_i9 from sample A9 / Example unspliced isoform:GTTAAATAGATCTCAAGTATCTCCACGGAGTGAGACCGATTTTTAAGAAGTATCTTTCGATTCTTCGCAAGCAATCACCGTAGCTAGAATTGTTTGTCTTTTTGGAGGGTTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTC
GTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGACCGGTTTTTTGGGTCGGGACGGTTTGTAACCTCTTAGTATAGTATTTTTCGTTTGAAAAAAGAAATTGTTTGTACCAATCTCACCAATTTTTTTTACTGTTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAA
GGATTTATGTGGAAGGAAACGCCATTTCAAGCTTATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGG
CCATCACCATTGAGGACACGTCGAGCTCAGATTTTTTCAAAGACAATCTCTGTTGGGTAAATCTGAATTTATCGGCAATCTCTGTTGGgtaacatgaatttattgaatctattgataatctttgttggttagtcagaattatttgttgatctttgttgggtactacgaatttattgacgatctctgttgggtagTCTTAA
TAGATTAATAAACTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCCGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCATTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGC
TCACATTATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCC
ACAAGGAGGACGTTTCACTGTTTGCAAAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTAACTGCATGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAACTTTCCACCGTACGTGTTGATGAAGCAGATGATAA
CCAAGGCTGGGCTTCACCTCCTCTCGAGAAAAATTTAGGGCTTTTGTCTGCAACCCGGATAGAACTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCGTTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAGCTCAATGCTAGTTATCCAGGTGGTTTGC
GTTCATATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGTGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGGTTAGGGAAGCATGTGATGCTGCATTTGTTCTTGTGGCAGGAGGACTTGGGGAGCGT
CTTGGTTATGGTGGTATTAAATTGGCACTGCCTTCAGAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGAAAGGTAGCTGTAAACAAAATGAAGGAAACGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATC
AAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACACGGGCATGGAGATGTGCATGCACTGCTTTATTCGAGTGGGCTTCTGCACAAATGGGAAAGTTCAGGCC
TGAAATGGGTTTTGTTTTTCCAGGACACTAATGGATTACTCTTCAAGGCAATACCTGCATCCTTAGGTGTAAGTGCAAGCAAGGATTTTCATGTTAATTCTTTGGCTGTTCCTCGTAAAGCCAAAGAAGCAATTGGCGGCATTGCTCAACTTACTCATGAAGATGGGAGAAGAATGGTGATAAATGTAGAGTACAACCAA
CTAGATCCTTTACTTCGAGCCACTGGACATATGGATGGAGATGCTAATGATAAAACAGGATACTCACCATACCCTGGGAATATCAACCAGCTAATACTAAGGCTTGAGCCATATATTGAGGAGCTATCAAAAACACAAGGTGCTATTACAGAGTTTGTGAACCCAAAGTACAAGGACTCTAGTAAAACATCCTTCAAGTC
GTCAACTCGGTTAGAATGTATGATGCAAGACTATCCAAGAACATTGCTTCCCTCAGCTCGAGTTGGATTTACTGTAATGGATACATGGCTTGCTTATGCACCGGTGAAAAACAATCCAGAAGATGCTGCTAAGGTACCAAAGGGTAATCCTTATCATAGTGCAACAAGTGGAGAAATGGCCATTTATCGGGCACACAGCC
AAATTCTCAGGAAGGTGGGTGTTAAGATAGAAGATCCTCAGGTGGGCGTTTTCAATGGACAAGAAGTTGAAGTTTGGCCACGGATTGTGTGGAGCCCAAAGTGGGCTTTAACATTTTCGGATGTGAAGAAAAAATTGACGGGAAATTGTGAAATATCTCAAAAATCAACCTTGGTTGTGAAGGGCGCAAATATTCACATT
CAGGATCTCTCTCTTAATGGGGCATTGATAGTAAATGCCATTGACCAGGCTGAGGTGAAGCTGTCACCTCACGTACAAAATGATGGATGGATTTTTGAACCTGTCGACTATAAGGATAATTCCATGCCAGAGGAAATTCGGATAAGGGGCTTTGCTATAAAAAAGAATGACCAAACTGTGTTGACCTATGATCAGCCTGG
AAAATATTGTGTTCAGTTCCAAAGTGTAAGCTGAATGGAAAGTGTATGATCATAGGCTTATTCTTCTGCTTTTTAAGTCTTCAAGGAGACTCCTTGAATCCCCATTTTTTGTGTTCATCTTCGTGATTGTTCTGAGTAAAGTCCAGAAAATTTGTGAATCTTGCAGTATCTGGCAGAAGAAGGGAGATATAATTGGCTTC
ACCAGCCATAGGATGTGCCTGGACTATTGTAGTGTCCAGTGATAACCTTCATTAAAGCAATATGTTTGTAAAAGAGTTATAGCATGTCTTGTGACTATTCTGTTTAGAGAATCTGATGTTGCTCTTTAGATGCAATTAGTTACTATATGAAGCCATCTAAACGTGAGAGACAAGGTTGGTATGAGAATTCCCATCCCTCT
CAAGATTTAAAAAAAAATCTTTTAATCACAAAACTCCCTAAAGATAGTGAGTGTAATAATCCCACGATGACAATAATTGCGAGACATGGGTGGTTTATGGAGTACTCTATGCACTAAAAGTTGTGCGCATTTTGAAATTGGTTTTGGCAAGCAAGTACCTGAGTTGATGTGATAGCATACTTCTTTGCTCTAATACCAAC
ATCACTTAGAGGTTGTTGTTTGCTGTGAGTTTGTTTGCAGGTAACTATTCTCTTCAGAGAATG
Intron 3 GTATACTTTA ... TTTTCCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.03 | 27 | 8.5 | 10 |
| A2 | 29.17 | 17 | 6 | 7 |
| A3 | 27.08 | 35 | 11 | 13 |
| A4 | 45.83 | 13 | 9.5 | 11 |
| A5 | 39.13 | 14 | 11 | 9 |
| A6 | 28.57 | 5 | 3 | 2 |
| A7 | 10.53 | 17 | 8.5 | 2 |
| A8 | 12.5 | 14 | 1 | 2 |
| A9 | 35.48 | 20 | 5.5 | 11 |
| A10 | 30.43 | 32 | 4 | 14 |
>TRINITY_DN112593_c0_g2_i5 from sample A5 / Example spliced isoformGTTTATACAGCTCCGTGAACCTGTAGCTCCTGCAGAGAAGCCCGGAGTGGACCAAGGAGATTGCGCCGAGCGGAAGGGAGCAGGTACTCACGAGCATATAGTCCCCGAGCAGAGAGGCGAGACCCCATTCGGCCAAAGAAACCGGACCCATGCAGAGAGCCAGAGGACCGAAGGGAGATTGTGGCCGAGCAGACCAGGGA
GAGCCGACGATGCCTCCAAAACCCGCGAATGAATCCTAATTCCTTCACTGTTTACTTCCTTGAATAATGCCCAAAAAATTATGTGCGAAATCGGGCGAGAGAGAGATACGAGGATTTCTTGCCTCTGTTTGTTTCGTGCAGTAAGCCAATCAATATCTACATATATAATACTCCCAAGGATTTATGTGGAAAGAAATGCC
ATTTCATGGGACATGCCACAAGGCGGGCTGATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACTCCCGAGCTCACTGAGCTCTCTCCCGAATCTCTTTTCTGTTGCTCACTCCATCT
GGGCCATCGCCATTAAAGACACATCGAGCTGAGATTCATTCAAAGGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCACCTTCTCTTGAGAAAAATTTAGGGCT
TTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGACTCTTGGCGGATTCAA
AAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTAATGCCGCGTTTGTTCTTGTAGCAGGAGGACTTGGGGAGCGTCTAGGTTATGGTGGTATCAAATTGGCACTAGCTTCAGAAACA
ACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGGAAGCTAGCTGTAAACAAAATGAAGGGAATGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTT
GAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACA
>TRINITY_DN112593_c0_g2_i3 from sample A5 / Example unspliced isoform:GTTTATACAGCTCCGTGAACCTGTAGCTCCTGCAGAGAAGCCCGGAGTGGACCAAGGAGATTGCGCCGAGCGGAAGGGAGCAGGTACTCACGAGCATATAGTCCCCGAGCAGAGAGGCGAGACCCCATTCGGCCAAAGAAACCGGACCCATGCAGAGAGCCAGAGGACCGAAGGGAGATTGTGGCCGAGCAGACCAGGGA
GAGCCGACGATGCCTCCAAAACCCGCGAATGAATCCTAATTCCTTCACTGTTTACTTCCTTGAATAATGCCCAAAAAATTATGTGCGAAATCGGGCGAGAGAGAGATACGAGGATTTCTTGCCTCTGTTTGgtatactttatatttctccacaaattaacaaaactttataaatgaattgatccgtgtgcatctacgggg
gttattcctcattcctttattaccatgttaaatagatctcaagtgtctccacgaagtgagaccgatttttaaggaagtattttttgattcttcttaagtactaaccgtagctagaattgtttgcaccaatctcaccaatttttttccctagTTTCGTGCAGTAAGCCAATCAATATCTACATATATAATACTCCCAAGGA
TTTATGTGGAAAGAAATGCCATTTCATGGGACATGCCACAAGGCGGGCTGATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACTCCCGAGCTCACTGAGCTCTCTCCCGAATCTCTT
TTCTGTTGCTCACTCCATCTGGGCCATCGCCATTAAAGACACATCGAGCTGAGATTCATTCAAAGGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCACCTTCT
CTTGAGAAAAATTTAGGGCTTTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAG
GCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTAATGCCGCGTTTGTTCTTGTAGCAGGAGGACTTGGGGAGCGTCTAGGTTATGGTGGTATCAAAT
TGGCACTAGCTTCAGAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGGAAGCTAGCTGTAAACAAAATGAAGGGAATGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAG
TCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACA
Intron 4 ATCTTTATTT ... AGTTCCCCAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.82 | 44 | 32.1 | 33.8 |
| A2 | 42.46 | 36 | 28.1 | 25 |
| A3 | 46.65 | 51 | 45 | 44.2 |
| A4 | 43.59 | 22 | 16 | 18 |
| A5 | 40.11 | 39.6 | 32 | 21 |
| A6 | 45.52 | 30 | 26.6 | 23.6 |
| A7 | 45.45 | 54 | 46 | 44 |
| A8 | 44.68 | 13 | 10 | 11 |
| A9 | 43.7 | 30 | 23.6 | 23 |
| A10 | 44.78 | 46.9 | 44 | 32 |
>TRINITY_DN134192_c0_g2_i2 from sample A1 / Example spliced isoformTTACGATTCTTCGCAAGCAATCAACGTAGCTAGAATTGTTTGTATTTTTGGAGGATTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGA
CCGGTTTTTTGGGTCGGGACGGTTTGTAACCTCTTAGTATAGTATTTTTCGTTTGAAAAAAGAAATTGTTTGTACCCATCTCACCAATTTTTTTTACTGTTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGTCATTTCAAGCTTATCTTTATTTATAGTTCCCC
ACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTTTTCAAAGTCTTAATAGATT
AATAAACTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCTGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCCTTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACAT
TATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGG
AGGACGTTTCACTGTTTGCAAAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTAACTGCATGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGG
CTGGGCTTCACCTTCTCTTGAGAAAAATTTAGGGCTTTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGATTGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCAT
ATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGGTTAGGGAAGCATGTGATGCTGCATTTGTTCTTGTGGCAGGAGGACTTGGGGAGCGTCTTGGT
TATGGTGGTATTAAAAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGAAAGGTAGCTGTAAACAAAATGAAGGAAACGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAG
TCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACA
>TRINITY_DN134192_c0_g2_i5 from sample A1 / Example unspliced isoform:TTACGATTCTTCGCAAGCAATCAACGTAGCTAGAATTGTTTGTATTTTTGGAGGATTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCGGA
CCGGTTTAGTATTTTTCGTTTGAAAAAAGAAATTGTTTGTACCCATCTCACCAATTTTTTTTACTGTTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGTCATTTCAAGCTTatctttatttatagttccccacATCTTTATTTATAGTTCCCCACACAACATTC
AGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTATTCAAAGATTAATAATCTCTGTTGGGCGCA
TCATTCTTTGGGGTAAATCGTGGGGCTACCTGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCCTTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCC
TTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCA
AAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTAACTGCATGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCACCTTCTCTTG
AGAAAAATTTAGGGCTTTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGATTGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGA
CTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTAATGCCGCGTTTGTTCTTGTAGCAGGAGGACTTGGGGAGCGTCTAGGTTATGGTGGTATCAAAGTAAA
TCCCAGTCAAACACATTGATGCATTTCTTGTTTGAAGTTGTGAAGAGTTGCAAATTTGAAAATGTGCTTTCAAAAATCATGGATGTAGTTTGTTTTTGTACACAAGGTTTCATGATTGAATTCAAGATTATAAAAATATTTGGTATTTAATTTTATATAGTCATATTCTTTGGACTTTATATACCAGCATTCTTATATGG
AAAGTTGAGTATTTGATTGGCTTACAGTTGGCACTGCCTTCAGAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGAAAGGTAGCTGTAAACAAAATGAAGGAAACGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCT
TGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACA
Intron 5 GTCGGGACGG ... TCCCGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.71 | 7 | 16 | 39 |
| A2 | 89.58 | 5 | 27 | 59 |
| A3 | 78.52 | 16 | 45 | 72 |
| A4 | 80 | 5 | 11 | 29 |
| A5 | 82.46 | 5 | 10 | 37 |
| A6 | 76 | 6 | 10 | 28 |
| A7 | 68.32 | 16 | 13 | 56 |
| A8 | 60 | 6 | 7 | 11 |
| A9 | 65.43 | 14 | 19 | 34 |
| A10 | 81.13 | 10 | 27 | 59 |
>TRINITY_DN134192_c0_g2_i7 from sample A1 / Example spliced isoformTTACGATTCTTCGCAAGCAATCAACGTAGCTAGAATTGTTTGTATTTTTGGAGGATTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGA
CCGGTTTTTTGGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGTCATTTCAAGCTTATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGA
GCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTATTCAAAGATTAATAATCTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCTGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCC
TTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACA
CCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCAAAGACTATCACTTACAGTCATTTCCAGATTTGAAGAGATAAATCTTGCAAGAATGTTGATTGAAGAGGCACAGCAGCATCTTTTTGC
TCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTG
GTGATGAAAATTTTATCAAATTTGAAGAAGCTGGG
>TRINITY_DN134192_c0_g2_i2 from sample A1 / Example unspliced isoform:TTACGATTCTTCGCAAGCAATCAACGTAGCTAGAATTGTTTGTATTTTTGGAGGATTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGA
CCGGTTTTTTGGgtcgggacggtttgtaacctcttagtatagtatttttcgtttgaaaaaagaaattgtttgtacccatctcaccaattttttttactgttcccgtgtagAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGTCATTTCAAGCTTATCTTTATTTATAGTTCCCC
ACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTTTTCAAAGTCTTAATAGATT
AATAAACTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCTGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCCTTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACAT
TATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGG
AGGACGTTTCACTGTTTGCAAAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTAACTGCATGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGG
CTGGGCTTCACCTTCTCTTGAGAAAAATTTAGGGCTTTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGATTGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCAT
ATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGGTTAGGGAAGCATGTGATGCTGCATTTGTTCTTGTGGCAGGAGGACTTGGGGAGCGTCTTGGT
TATGGTGGTATTAAAAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGAAAGGTAGCTGTAAACAAAATGAAGGAAACGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAG
TCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACA
Intron 6 GTATGTGCTA ... GTGTTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.14 | 174 | 0 | 2 |
| A2 | 4.84 | 118 | 0 | 6 |
| A3 | 0 | 142 | 0 | 0 |
| A4 | 2.67 | 146 | 0 | 4 |
| A5 | 10.53 | 34 | 0 | 4 |
| A6 | 3.2 | 393.3 | 2 | 13 |
| A7 | 1.62 | 424 | 0 | 7 |
| A8 | 2.85 | 511.6 | 1 | 15 |
| A9 | 0 | 367 | 0 | 0 |
| A10 | 2.35 | 291 | 0 | 7 |
>TRINITY_DN46618_c1_g2_i7 from sample A8 / Example spliced isoformTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGACCGGTTTTTTGGGTCGGGACGGTTTGTAACCTCTTAGTATAGTATTTTTCGTTTGAAAAAAGAAA
TTGTTTGTACCCATCTCACCAATTTTTTTTACTGTTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGTCATTTCAAGCTTATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATC
GTGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTTTTCAAAGATTAATAAACTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCCGGTGGTTGTCTTCAACAGAAGAG
GAGGGCACACGCTTCAAGGTTTATGGTAAATCATTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTAC
CCAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCAAAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGGTTCAGTTTTTTGTTTA
ACTGCATGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAGCTTTCCACCATACATGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCACCTTCTCTTGAGAAAAATTTAGGGCTTTTGTCTGCAACCCAGATAAATCTTGCAAGAATGTTGA
TAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCGTATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCA
GTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTAATGCCGCGTTTGTTCTTGTAGCAGGAGGACTTGGGGAGCGTCTAGGTTATGGTGGTATCAAATTGGCACTAGCTTCAGAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAG
CATACTGGCTCTGCAGGAAGCTAGCTGTAAACAAAATGAAGGGAATGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTAATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATG
CTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACACGGGCATGGAGATGTGCATGCACTGCTTTATTCGAGTGGGCTTCTGCACAAATGGGAAAGTTCAGGCCTGAAATGGGTTTTGTTTTTCCAGGACACTAATGGATTACTCTTCAAGGCAATACCTGCATCCTTAGGTGTAAGTGCAAGC
AAGGATTTTCATGTTAATTCTTTGGCTGTTCCTCGTAAAGCCAAAGAAGCAATTGGCGGCATTGCTCAACTTACTCATGAAGATGGGAGAAGAATGGTGATAAATGTAGAGTACAACCAACTAGATCCTTTACTTCGAGCCACTGGACATATGGATGGAGATGCTAATGATAAAACAGGATACTCACCATACCCTGGGAA
TATCAACCAGCTAATACTAAGGCTTGAGCCATATATTGAGGAGCTATCAAAAACACAAGGCGCTATTACAGAGTTTGTGAACCCAAAGTACAAGGACTCTAGTAAAACATCCTTCAAGTCGTCAACTCGGTTAGAATGTATGATGCAAGACTATCCAAGAACATTGCTTCCCTCAGCTCGAGTTGGATTTACTGTAATGG
ATACATGGCTTGCTTATGCACCGGTGAAAAACAATCCAGAAGATGCTGCTAAGGTACCAAAGGGTAATCCTTATCATAGTGCAACAAGTGGAGAAATGGCCATTTATCGGGCACACAGCCAAATTCTCAGGAAGGTGGGTGTTAAGATAGAAGATCCTCAGGTGGGCGTTTTCAATGGACAAGAAGTTGAAGTTTGGCCA
CGGATTGTGTGGAGCCCAAAGTGGGCTTTGACATTTTCGGATGTGAAGAAAAAATTGACGGGAAATTGTGAAATATCTCAAAAATCAACCTTGGTTGTGAAGGGCGCAAATATTCACATTCAGGATCTCTCTCTTAATGGGGCATTGATAGTAAATGCCATTGACCAGGCTGAGGTGAAGCTGTCACCTCACGTACAAAA
TGATGGATGGATTTTTGAACCTGTCGACTATAAGGATAATTCCATGCCAGAGGAAATTCGGATAAGGGGTTTTGCTATAAAAAAGAATGATCAAACAGTATTGACCTATGATCAGCCTGGAAAATATCGTGTTCACTTCCACAGTGTAAGCTGAATAGAATAAGGCAGTTGGATCATAGGCTTATTCTTCTGCTTTTTAG
GTCTTCAAGGAGACTCCTTGAATCCCCATTTTTTGTGTTCATCTTCATGATTGTTCTGAATAAAGTCCAGAAAATTTGTGAATCTTGCGGTATCTGGCAGAAGAAGGGAGATATAATTGGCTTCACCAGCCATAGGATGTGCCTGGACTATTGTAGTGTCCAGTGATAACCTTCATTAAAGCAATATGCTATTAAAAGAG
TTATAGCATGTCTTGTGAATATTCTGTTTAGAGAATGTGATGTTGCTAAAGAGAGTGAGTGTAATAATCCACGATGACAATAATGGCGAGACATGGGTGGTTTATGGAGTACTCTATGCACTAAAAGTTGTGCGAATTTGGAAATTGGTTTTGGTGAGCAAGTACCTGAGTTGATGTGACAGCATACTTCTTTGCTCTAA
TACCAACATCGCTTAGAGGTTGTTGTTTGCTGTGAGTTTGTTTGCAGGTAACTATTCTCTTCAGAGAATGTGATGTTGCTCTTTAAATGCAATTAGTTTATATTTGAAGCCTAGTAAATGTGAGTATCGCGAGGTTGGTATTAGAACTCCCACCCCTCACTTCTCCACTTTGATACCAACATCACTTAGAAATTGTTCAT
GTAACTTGTGAGTTTGCTTACAATTTTTTGTGTTGTTTATATTACGTCTTCTTAAATGCAAGCTTACTAGATGACAATTGCATATCCATTGATAATGATTGTGTCCTACATTAATATGACTACTACTTTTTGAATATATAATAAAACACCATAAATGATATGTTTTAGGGAGAAAGGAGAAGCCATATTTCTTACTGTTT
CATTAGTTAATTTACAATTTTAATTTATAAATTGTACGAGGACCTAAAAGTCCAAAAGTCCAAAACATTGAGTGTGCAAGACTTATATTGTTTTATAGGTGC
>TRINITY_DN46618_c1_g2_i5 from sample A8 / Example unspliced isoform:AATGCCATTGACCAGGCTGAGgtatgtgctactgtattatgtgtattcttcaacgagcatttgggtgtgagatacttcagagataacatgaattaaactatcctaaaatgaagaatggttgcaaatcttctaagcatgtactgtgtttttagGTGAAGCTGTCACCTCACGTACAAAATGATGGATGGATTTTTGAACCT
GTCGACTATAAGGATAATTCCATGCCAGAGGAAATTCGGATAAGGGG
Intron 7 GTTCAGTTTT ... TGCAACCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.99 | 47 | 110 | 144 |
| A2 | 66.02 | 44 | 57 | 114 |
| A3 | 67.86 | 61.3 | 108 | 151 |
| A4 | 74.49 | 31 | 69 | 112 |
| A5 | 67.94 | 21 | 32 | 57 |
| A6 | 67.86 | 18 | 30 | 46 |
| A7 | 69.71 | 51.7 | 93.7 | 144 |
| A8 | 69.64 | 17 | 29 | 49 |
| A9 | 73.21 | 31.7 | 53 | 120 |
| A10 | 65.8 | 61.3 | 85 | 151 |
>TRINITY_DN134192_c0_g2_i7 from sample A1 / Example spliced isoformTTACGATTCTTCGCAAGCAATCAACGTAGCTAGAATTGTTTGTATTTTTGGAGGATTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCCGA
CCGGTTTTTTGGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGTCATTTCAAGCTTATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGA
GCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTATTCAAAGATTAATAATCTCTGTTGGGCGCATCATTCTTTGGGGTAAATCGTGGGGCTACCTGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCC
TTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCCTTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACA
CCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCAAAGACTATCACTTACAGTCATTTCCAGATTTGAAGAGATAAATCTTGCAAGAATGTTGATTGAAGAGGCACAGCAGCATCTTTTTGC
TCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGACTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTG
GTGATGAAAATTTTATCAAATTTGAAGAAGCTGGG
>TRINITY_DN134192_c0_g2_i4 from sample A1 / Example unspliced isoform:TTACGATTCTTCGCAAGCAATCAACGTAGCTAGAATTGTTTGTATTTTTGGAGGATTGGTATATCTTGGGTTTGTCTGTTGTCTCCGGTGTCCTTGTCGATTGGGCAGTTCTTTCGTTGTCATTCTTGTCATATCTGGGGCTGCTCGTCTCTTTGGCACTGGCTGTTGTTCGGGGTTTGGTTCGGTGGTGGTTTCTCGGA
CCGGTTTAGTATTTTTCGTTTGAAAAAAGAAATTGTTTGTACCCATCTCACCAATTTTTTTTACTGTTCCCGTGTAGAAAGCCAATCAATATCTACAGATGTAATACTTCCAAGGATTTATGTGGAAGGAAACGTCATTTCAAGCTTATCTTTATTTATAGTTCCCCACATCTTTATTTATAGTTCCCCACACAACATTC
AGATATATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACCCCCGAGCTCAGTGAGCTCTCTAAATCTCTTTTCTGTTGCTCGCTAGAAATGGGCCATCACCATTGAGGACACGTCGAGCTCAGATTTATTCAAAGATTAATAATCTCTGTTGGGCGCA
TCATTCTTTGGGGTAAATCGTGGGGCTACCTGGTGGTTGTCTTCAACAGAAGAGGAGGGCACACGCTTCAAGGTTTATGGTAAATCCTTCACTGTTGTTAACCAGTAGAAGCAAGGCGCTGTTCCAGAGTTGTTTGGTGACTGTGGGGGCGCACTTCCCAAGGCTGTTCGCTGCTCACATTATCAGTTATCATTTTCCCC
TTGTCCGAGTTAACTCACAGCAGATTTGGGCATTAAAAAGGGTCTGTTATTTACCCAAAAGGGGCGCTGCAAACTCATGTCATTACACCAGCGGTTGGGACTGATTTCCGGAGGAGAAACTCCATTCACCGAGGGGGCTGTCTCACACTGTTAACTACAGGAAGTTCGTGACCCACAAGGAGGACGTTTCACTGTTTGCA
AAGACTATCACTTATAGTCACTTCCAGATTTGAAGAGgttcagttttttgtttaactgcatgcatcttgctttcctggtttcaagttagtgtttgttgcttgggagaaaatggtgactgtacaatcaacaatccaaaagctttccaccatacatgttgatgaagcagatgataaccaaggctgggcttcaccttctcttg
agaaaaatttagggcttttgtctgcaacccagATAAATCTTGCAAGAATGTTGATTGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAACTCGATGCTAGTTATCCAGGTGGTTTGCGTTCATATATACATAATGCTAGGCGA
CTCTTGGCGGATTCAAAAGCTGGGAAGAATCCATTTGATGGTTTTACCCCTTCAGTACCAGCTGGGGAGGTGTTGTCATTTGGTGATGAAAATTTTATCAAATTTGAAGAAGCTGGGATTAGGGAAGCATGTAATGCCGCGTTTGTTCTTGTAGCAGGAGGACTTGGGGAGCGTCTAGGTTATGGTGGTATCAAATTGGC
ACTAGCTTCAGAAACAACAACTGGAACTTGCTTCTTGCAAGTGTATATAGAGAGCATACTGGCTCTGCAGGAAGCTAGCTGTAAACAAAATGAAGGGAATGTTGACAGGCATATCCCCTTAGTGATAATGACATCAGATGATACGCACAGTCGAACTCAAGAGCTTCTTGAATCAAATGCATATTTTGGGATGAAGTCTA
ATCAAGTGCACCTTTTGAAGCAGGAAAAAGTGGCATGCTTGGCAGACAATGATGCTAGTTTGGCATTAGATCCTTCAGAAAAGTATAAAATTCAGACAAAACCACACGGGCATGGAGATGTGCATGCACTGCTTTATTCGAGTGGGCTTCTGCACAAATGGGAAAGTTCAGGCCTGAAATGGGTTTTGTTTTTCCAGGAC
ACTAATGGATTACTCTTCAAGGCAATACCTGCATCCTTAGGTGTAAGTGCAAGCAAGGATTTTCATGTTAATTCTTTGGCTGTTCCTCGTAAAGCCAAAGAAGCAATTGGCGGCATTGCTCAACTTACTCATGAAGATGGGAGAAGAATGGTGATAAATGTAGAGTACAACCAACTAGATCCTTTACTTCGAGCCACTGG
ACAT
Intron 8 GTTCAGCTTT ... TTAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.2 | 49 | 49 | 58 |
| A2 | 46.24 | 50 | 39 | 47 |
| A3 | 52.87 | 37 | 38 | 45 |
| A4 | 50.44 | 28 | 26 | 31 |
| A5 | 39.13 | 21 | 9 | 18 |
| A6 | 43.28 | 19 | 14 | 15 |
| A7 | 53.49 | 40 | 43 | 49 |
| A8 | 49.21 | 16 | 14 | 17 |
| A9 | 50 | 47 | 48 | 46 |
| A10 | 48.07 | 74 | 58 | 79 |
>TRINITY_DN123076_c0_g2_i6 from sample A3 / Example spliced isoformAAGGATTTATGTGGAAAGAAATGCCATTTCATGGGACATGCCACAAGGCGGGCTGATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACTCCCGAGCTCACTGAGCTCTCTCCCGAAT
CTCTTTTCTGTTGCTCACTCCATCTGGGCCATCGCCATTAAAGACACATCGAGCTGAGATTCATTCAAAGGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAACTTTCCACCGTACGTGTTGATGAAGCAGATGATAACCAAGGCTGGGCTTCAC
CTCCTCTCGAGAAAAATTTAGGGCTTTTGTCTGCAACCCGGATAGAACTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAGCTCAATGCTAGTTATCCAGGTGGTTTG
>TRINITY_DN123076_c0_g2_i4 from sample A3 / Example unspliced isoform:AAGGATTTATGTGGAAAGAAATGCCATTTCATGGGACATGCCACAAGGCGGGCTGATCTTTATTTATAGTTCCCCACACAACATTCAGATATATACATACATTGCCATCTGAGAATGTTTTTGTCAGAGCGGAGCTGTAGTATCGTGCACATCACGGTACAATTGTCATACTCCCGAGCTCACTGAGCTCTCTCCCGAAT
CTCTTTTCTGTTGCTCACTCCATCTGGGCCATCGCCATTAAAGACACATCGAGCTGAGATTCATTCAAAGgttcagctttttgtttaattgcagGCATCTTGCTTTCCTGGTTTCAAGTTAGTGTTTGTTGCTTGGGAGAAAATGGTGACTGTACAATCAACAATCCAAAAACTTTCCACCGTACGTGTTGATGAAGCAG
ATGATAACCAAGGCTGGGCTTCACCTCCTCTCGAGAAAAATTTAGGGCTTTTGTCTGCAACCCGGATAGAACTTGCAAGAATGTTGATAGAAGAGGCACAGCAGCATCTTTTTGCTCATTGGCCTGAGCCAGGCATTGATGATGAGAATAAAAAAAGATTCTTTGACCAGGTAGAAAAGCTCAATGCTAGTTATCCAGGT
GGTTTG