NA ----> NA
Intron 1 GTTAAAATGT ... TTGTTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 41 | 104 | 101 |
| A2 | 66.67 | 44 | 113 | 63 |
| A3 | 66.28 | 44 | 112 | 61 |
| A4 | 71.7 | 30 | 109 | 43 |
| A5 | 82.98 | 8 | 53 | 25 |
| A6 | 68.49 | 115 | 288 | 212 |
| A7 | 69.02 | 184 | 572 | 248 |
| A8 | 69.51 | 184 | 492 | 347 |
| A9 | 68.48 | 174 | 502 | 254 |
| A10 | 67.35 | 153 | 409.3 | 222 |
>TRINITY_DN122123_c4_g1_i7 from sample A1 / Example spliced isoformAAAATAAATAGATTATAATTCAGAAACCATGACAAGATCACAGTAGACTCCAGTGCGACATAAAATGTTTGTGGAAGGAGGAAAATGGTAGCATCAGGCGAGGGCGTGGGTGGAATTACAGGCATCGAACCATACCAATTCCAAATGTATCTCCACAATCCGCCCTGGTCTGAGGATCTCCTCCATTCTTCTTCCTCCTC
ATCAGCTTCTGCCTCTTCCTCAGCCTTACCTGGTGGCGCGGTAGACTTGGTAAAATCGCTGAACAAGCAGAGGCTCTATAGAGAGATCACTCTCGCCCTCAGAACCACCCTAAGGGATGCCACCGCGGAGTTTTCGTTTCTCCGAGTCAAGGGACTGGAGAAGCTTTTGAAGTTCTTGGCCTCCGTCGTGGAAACGGAGA
ACATGATTGAGCTTTTCCGCGAGACCCAGACTTTTACAGAATTTCAAGTGGTGCCAGTTTTGTTTCATTATTCAATTGCTCCTTCAAAAAGTGGCCTAGTCCCGAAATCAGATGATAAGTCTTCTGAGGAGCACAGAAAAATTGCAAGTCCCCCTACAAGTAATGAAGTGGCCCTGGCTCTCCAGGTATTGGAAGGATGC
TGTCTTCTGGACAGGGATAGCAGGACTTTGGCACCACAGTATATGGCCATAAAGGAAATAATTAGATTGCTGTCTGATTGTAGCACACTTGTGCAATGTGCTTGCCTGGATGCTTTGATTGCATTAATGCTGGACTCGTTGGAGAATCAGAAGGAGTTTGAACGGCATCGTGGAGTTAGAAAAGTCGCAGAGTTGATAAA
TTTTTTTCACGTTGATGAACAATTGAGACATCGCTGGTCTTCCTGCCAGCTAGAATAACTACCAGACAGTCCATTTTGAGGTAACACAGGCTCAATTGCAGAAGCATCTCAAAGTCAACTTGATCAGCAATGCAATGCCAGCTTGTCAACTTGTTAGCAACTGTATTTTTTGTAGAAGCTTGCCTCATTTTGTTCATCGG
TCAGAGAACAGTCGTGTGTCTTTTTGATCATCCTATGTTGAGATCATCTCACAATTGTATCAGTGTTGTGATTCCTTCCTAGTATTTCCTTGAAACTAGTCATACATCAGGCAAGTTGAATAGTTGCATGAGAGATAATACAAGATCTAATGCCAAAGGCAAAATTTGTAACATATTACTGGAATACTTTTGCACATCGT
GAGTTGTTAGCATCTTTGTGTGCTGTAATCATGGGAACCATGTGCCAAATATATTTGTTTGAAAATGGTATGGCGGTAAAGCTGGAATATAGTTAATGTTGTCATAATTGTGAACTATTAAACTTGTAAGTTATATTTGCAATGAGAGAAGTGAGGTGCTCTATAGCTTTGTGTGACTGTAACAGTAAAAAAACTGACAT
TCAAAATATTGATTTTACACATGCAAGTATAGGTCCATCTTAACACCATATTTATTCACTAGGAGAGGTTTACACCTAGGGTTTTTGATCCCTCTTGGCGCTTAATAGATCTGCATTACCTTGTGGGTGAATGTAACACCAAAAACATGCTAGGTTTTTGATCCCTCTTGGTGCTTAACAGATCTGCA
>TRINITY_DN122123_c4_g1_i2 from sample A1 / Example unspliced isoform:AAAATAAATAGATTATAATTCAGAAACCATGACAAGATCACAGTAGACTCCAGTGCGACATAAAATGTTTGTGGAAGGAGGAAAATGGTAGCATCAGGCGAGGGCGTGGGTGGAATTACAGGCATCGAACCATACCAATTCCAAATGTATCTCCACAATCCGCCCTGGTCTGAGGATCTCCTCCATTCTTCTTCCTCCTC
ATCAGCTTCTGCCTCTTCCTCAGCCTTACCTGGTGGCGCGGTAGACTTGGTAAAATCGCTGAACAAGCAGAGGCTCTATAGAGAGATCACTCTCGCCCTCAGAACCACCCTAAGGGATGCCACCGCGGAGTTTTCGTTTCTCCGAGTCAAGGGACTGGAGAAGCTTTTGAAGTTCTTGGCCTCCGTCGTGGAAACGGAGA
ACATGATTGAGCTTTTCCGCGAGACCCAGACTTTTACAGAATTTCAAGTGGTGCCAGTTTTGTTTCATTATTCAATTGCTCCTTCAAAAAGTGGCCTAGTCCCGAAATCAGATGATAAGTCTTCTGAGGAGCACAGAAAAATTGCAAGTCCCCCTACAAGTAATGAAGTGGCCCTGGCTCTCCAGGTATTGGAAGGATGC
TGTCTTCTGGACAGGGATAGCAGGACTTTGGCACCACAGTATATGGCCATAAAGGAAATAATTAGATTGCTGTCTGATTGTAGCACACTTGTGCAATGTGCTTGCCTGGATGCTTTGATTGCATTAATGCTGGACTCGTTGGAGAATCAGAAGGAGTTTGAACGGCATCGTGGAGTTAGAAAAGTCGCAGAGTTGATAAA
TTTTTTTCACGTTGATGAACAATTGAGgttaaaatgtgcagaattcctattgttggtcgtaggaaaggtgctcccttcctcaagtaagtttatagaaaatatagaagatgaagaaggacaagaagagccatcaagaatagagagcgtacaagatgacattttagaacttcttggagaagaaattgcatctctattatggg
cagcaggtcaactgtggtcatcagttggctctgaaataaatcaaacttcattacaatttcaggctcaacagttgttagactgtttggattctaaaagatgatgacactgcattgacattgtaacatgtttgaatctttgattgcttttctattttgatttaagtttatgcgagattctgattggtatgctcatctgtttt
aatctgtacttaatgggaaggatttaccttgctgcttgctatcttgttctcagACATCGCTGGTCTTCCTGCCAGCTAGAATAACTACCAGACAGTCCATTTTGAGGTAACACAGGCTCAATTGCAGAAGCATCTCAAAGTCAACTTGATCAGCAATGCAATGCCAGCTTGTCAACTTGTTAGCAACTGTATTTTTTGTA
GAAGCTTGCCTCATTTTGTTCATCGGTCAGAGAACAGTCGTGTGTCTTTTTGATCATCCTATGTTGAGATCATCTCACAATTGTATCAGTGTTGTGATTCCTTCCTAGTATTTCCTTGAAACTAGTCATACATCAGGCAAGTTGAATAGTTGCATGAGAGATAATACAAGATCTAATGCCAAAGGCAAAATTTGTAACAT
ATTACTGGAATACTTTTGCACATCGTGAGTTGTTAGCATCTTTGTGTGCTGTAATCATGGGAACCATGTGCCAAATATATTTGTTTGAAAATGGTATGGCGGTAAAGCTGGAATATAGTTAATGTTGTCATAATTGTGAACTATTAAACTTGTAAGTTATATTTGCAATGAGAGAAGTGAGGTGCTCTATAGCTTTGTGT
GACTGTAACAGTAAAAAAACTGACATTCAAAATATTGATTTTACACATGCAAGTATAGGTCCATCTTAACACCATATTTATTCACTAGGAGAGGTTTACACCTAGGGTTTTTGATCCCTCTTGGCGCTTAATAGATCTGCATTACCTTGTGGGTGAATGTAACACCAAAAACATGCTAGGTTTTTGATCCCTCTTGGTGC
TTAACAGATCTGCA
Intron 2 GTAACATGTT ... TTGTTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.51 | 45 | 86 | 101 |
| A2 | 59.55 | 36 | 43 | 63 |
| A3 | 64.47 | 27 | 37 | 61 |
| A4 | 55.86 | 32 | 38 | 43 |
| A5 | 72.88 | 8 | 18 | 25 |
| A6 | 64.5 | 101 | 155 | 212 |
| A7 | 60 | 150 | 202 | 248 |
| A8 | 63.86 | 191 | 328 | 347 |
| A9 | 64.4 | 144 | 267 | 254 |
| A10 | 61.06 | 132 | 192 | 222 |
>TRINITY_DN122123_c4_g1_i3 from sample A1 / Example spliced isoformAAAATAAATAGATTATAATTCAGAAACCATGACAAGATCACAGTAGACTCCAGTGCGACATAAAATGTTTGTGGAAGGAGGAAAATGGTAGCATCAGGCGAGGGCGTGGGTGGAATTACAGGCATCGAACCATACCAATTCCAAATGTATCTCCACAATCCGCCCTGGTCTGAGGATCTCCTCCATTCTTCTTCCTCCTC
ATCAGCTTCTGCCTCTTCCTCAGCCTTACCTGGTGGCGCGGTAGACTTGGTAAAATCGCTGAACAAGCAGAGGCTCTATAGAGAGATCACTCTCGCCCTCAGAACCACCCTAAGGGATGCCACCGCGGAGTTTTCGTTTCTCCGAGTCAAGGGACTGGAGAAGCTTTTGAAGTTCTTGGCCTCCGTCGTGGAAACGGAGA
ACATGATTGAGCTTTTCCGCGAGACCCAGACTTTTACAGAATTTCAAGTGGTGCCAGTTTTGTTTCATTATTCAATTGCTCCTTCAAAAAGTGGCCTAGTCCCGAAATCAGATGATAAGTCTTCTGAGGAGCACAGAAAAATTGCAAGTCCCCCTACAAGTAATGAAGTGGCCCTGGCTCTCCAGGTATTGGAAGGATGC
TGTCTTCTGGACAGGGATAGCAGGACTTTGGCACCACAGTATATGGCCATAAAGGAAATAATTAGATTGCTGTCTGATTGTAGCACACTTGTGCAATGTGCTTGCCTGGATGCTTTGATTGCATTAATGCTGGACTCGTTGGAGAATCAGAAGGAGTTTGAACGGCATCGTGGAGTTAGAAAAGTCGCAGAGTTGATAAA
TTTTTTTCACGTTGATGAACAATTGAGGTTAAAATGTGCAGAATTCCTATTGTTGGTCGTAGGAAAGGTGCTCCCTTCCTCAAGTAAGTTTATAGAAAATATAGAAGATGAAGAAGGACAAGAAGAGCCATCAAGAATAGAGAGCGTACAAGATGACATTTTAGAACTTCTTGGAGAAGAAATTGCATCTCTATTATGGG
CAGCAGGTCAACTGTGGTCATCAGTTGGCTCTGAAATAAATCAAACTTCATTACAATTTCAGGCTCAACAGTTGTTAGACTGTTTGGATTCTAAAAGATGATGACACTGCATTGACATTACATCGCTGGTCTTCCTGCCAGCTAGAATAACTACCAGACAGTCCATTTTGAGGTAACACAGGCTCAATTGCAGAAGCATC
TCAAAGTCAACTTGATCAGCAATGCAATGCCAGCTTGTCAACTTGTTAGCAACTGTATTTTTTGTAGAAGCTTGCCTCATTTTGTTCATCGGTCAGAGAACAGTCGTGTGTCTTTTTGATCATCCTATGTTGAGATCATCTCACAATTGTATCAGTGTTGTGATTCCTTCCTAGTATTTCCTTGAAACTAGTCATACATC
AGGCAAGTTGAATAGTTGCATGAGAGATAATACAAGATCTAATGCCAAAGGCAAAATTTGTAACATATTACTGGAATACTTTTGCACATCGTGAGTTGTTAGCATCTTTGTGTGCTGTAATCATGGGAACCATGTGCCAAATATATTTGTTTGAAAATGGTATGGCGGTAAAGCTGGAATATAGTTAATGTTGTCATAAT
TGTGAACTATTAAACTTGTAAGTTATATTTGCAATGAGAGAAGTGAGGTGCTCTATAGCTTTGTGTGACTGTAACAGTAAAAAAACTGACATTCAAAATATTGATTTTACACATGCAAGTATAGGTCCATCTTAACACCATATTTATTCACTAGGAGAGGTTTACACCTAGGGTTTTTGATCCCTCTTGGCGCTTAATAG
ATCTGCATTACCTTGTGGGTGAATGTAACACCAAAAACATGCTAGGTTTTTGATCCCTCTTGGTGCTTAACAGATCTGCA
>TRINITY_DN122123_c4_g1_i2 from sample A1 / Example unspliced isoform:AAAATAAATAGATTATAATTCAGAAACCATGACAAGATCACAGTAGACTCCAGTGCGACATAAAATGTTTGTGGAAGGAGGAAAATGGTAGCATCAGGCGAGGGCGTGGGTGGAATTACAGGCATCGAACCATACCAATTCCAAATGTATCTCCACAATCCGCCCTGGTCTGAGGATCTCCTCCATTCTTCTTCCTCCTC
ATCAGCTTCTGCCTCTTCCTCAGCCTTACCTGGTGGCGCGGTAGACTTGGTAAAATCGCTGAACAAGCAGAGGCTCTATAGAGAGATCACTCTCGCCCTCAGAACCACCCTAAGGGATGCCACCGCGGAGTTTTCGTTTCTCCGAGTCAAGGGACTGGAGAAGCTTTTGAAGTTCTTGGCCTCCGTCGTGGAAACGGAGA
ACATGATTGAGCTTTTCCGCGAGACCCAGACTTTTACAGAATTTCAAGTGGTGCCAGTTTTGTTTCATTATTCAATTGCTCCTTCAAAAAGTGGCCTAGTCCCGAAATCAGATGATAAGTCTTCTGAGGAGCACAGAAAAATTGCAAGTCCCCCTACAAGTAATGAAGTGGCCCTGGCTCTCCAGGTATTGGAAGGATGC
TGTCTTCTGGACAGGGATAGCAGGACTTTGGCACCACAGTATATGGCCATAAAGGAAATAATTAGATTGCTGTCTGATTGTAGCACACTTGTGCAATGTGCTTGCCTGGATGCTTTGATTGCATTAATGCTGGACTCGTTGGAGAATCAGAAGGAGTTTGAACGGCATCGTGGAGTTAGAAAAGTCGCAGAGTTGATAAA
TTTTTTTCACGTTGATGAACAATTGAGGTTAAAATGTGCAGAATTCCTATTGTTGGTCGTAGGAAAGGTGCTCCCTTCCTCAAGTAAGTTTATAGAAAATATAGAAGATGAAGAAGGACAAGAAGAGCCATCAAGAATAGAGAGCGTACAAGATGACATTTTAGAACTTCTTGGAGAAGAAATTGCATCTCTATTATGGG
CAGCAGGTCAACTGTGGTCATCAGTTGGCTCTGAAATAAATCAAACTTCATTACAATTTCAGGCTCAACAGTTGTTAGACTGTTTGGATTCTAAAAGATGATGACACTGCATTGACATTgtaacatgtttgaatctttgattgcttttctattttgatttaagtttatgcgagattctgattggtatgctcatctgtttt
aatctgtacttaatgggaaggatttaccttgctgcttgctatcttgttctcagACATCGCTGGTCTTCCTGCCAGCTAGAATAACTACCAGACAGTCCATTTTGAGGTAACACAGGCTCAATTGCAGAAGCATCTCAAAGTCAACTTGATCAGCAATGCAATGCCAGCTTGTCAACTTGTTAGCAACTGTATTTTTTGTA
GAAGCTTGCCTCATTTTGTTCATCGGTCAGAGAACAGTCGTGTGTCTTTTTGATCATCCTATGTTGAGATCATCTCACAATTGTATCAGTGTTGTGATTCCTTCCTAGTATTTCCTTGAAACTAGTCATACATCAGGCAAGTTGAATAGTTGCATGAGAGATAATACAAGATCTAATGCCAAAGGCAAAATTTGTAACAT
ATTACTGGAATACTTTTGCACATCGTGAGTTGTTAGCATCTTTGTGTGCTGTAATCATGGGAACCATGTGCCAAATATATTTGTTTGAAAATGGTATGGCGGTAAAGCTGGAATATAGTTAATGTTGTCATAATTGTGAACTATTAAACTTGTAAGTTATATTTGCAATGAGAGAAGTGAGGTGCTCTATAGCTTTGTGT
GACTGTAACAGTAAAAAAACTGACATTCAAAATATTGATTTTACACATGCAAGTATAGGTCCATCTTAACACCATATTTATTCACTAGGAGAGGTTTACACCTAGGGTTTTTGATCCCTCTTGGCGCTTAATAGATCTGCATTACCTTGTGGGTGAATGTAACACCAAAAACATGCTAGGTTTTTGATCCCTCTTGGTGC
TTAACAGATCTGCA