NA ----> NA
Intron 1 GTAGGTTAAA ... TTATTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.95 | 8 | 9 | 9 |
| A2 | 36.91 | 15 | 4 | 11 |
| A3 | 29.95 | 20 | 7 | 9 |
| A4 | 49.34 | 16 | 11 | 7 |
| A5 | 29.16 | 6 | 2 | 0 |
| A6 | 24.56 | 5.5 | 0 | 3 |
| A7 | 23.81 | 6 | 0 | 3 |
| A8 | 60 | 2 | 2 | 0 |
| A9 | 22.66 | 7 | 0 | 3 |
| A10 | 9.03 | 12 | 0 | 2 |
>TRINITY_DN112721_c0_g1_i5 from sample A3 / Example spliced isoformCTAACAGACAAATGAATGGCCATGGTGTGATCCAGACCTTGTTTCTTTATCAAACTTTTATCTTTCTCAAAATTGCTGAGAGTATGCAGAAGCGTTGGGGCATAGTGTCTATCGCTGCTGAAGATGCTGTAGATTTGCTAATGGCTGGGTTTGCATTCCGTCTCAGGATTTTGTATGAGAAAGATAAAAGTTTGATAAAG
AAACAAGGTCTTTTTGGTGTGATGCCTGTCGGAAATCTACAAAATAGTAATCTTGTTCCCTTGGAGAAAGATTTGCTACTTCGTAGCCAGCATTCCAGCATGTTAAATGGCTTGCAGGGGTTGCATCCAGCTTATGGGCCAACTGTGCGGCTTGCCAAAAGATGGATTTGTTCGCATATGCTTTCTGGAATTTTGGCAGA
TGAAGCGGTGGAGCTATTGGTTGCATATCTGTTTGTCAGGCCATTCCCATTCCATGTTCCTTGTTCACGCGTGACAGGTTTCTTAAGGTTTCTGCGTCTTGTTGCTTATCATGACTGGGCCCTCTCTCCTTTAATTGTTGATGTCAATGGGGACTTAACAGTGAAGGAAGAAGGTCAAATTACGGCCCAGTTTATTGCCA
AACGAAAAGTCTCTCCGGGAGAATCTCATGCAATTAATGCAGGACCAGCAATGTACATAGCAACCCCATATGATTGGGAATCAGAGAGTTGGACCTCATTCTCTCCAGACAATCTTGGTCTTAAAAGGCTTATTGCATATGCTAGAAGCAGTGATGAACTTTTAACTCGCCTCATTGGAGGAGAGGTACAGGATGGGTGG
GAGTCCTTGTTCCGTACACCTTTACAGTGCTATGATGCCTTGATTATACTTCACAGAGATAAATTGGCCTATCCAAGTCAAATGTTGTTTAATGCTGATCTTAAGCAAGGATCACTGCCTGTGGCAACCCAGAAAGCAAGCAAGGATTTTTCTGCATATATTTCTCCGGCGGTGATTAGGAGGGGCTTTCAAGAAGCTAA
GAAGCATTTGCTAGTTGGCTTTGATCCAGTGAAATATTTCCTGCATGACCTGAAGACTGACATCCCAAAAGTTTTTAATATATGGCATGATGCTTTTGGAAGTGAGGTTATCGGGCTAACATGGAACAAGGAATATTTCTTTTCAAAGG
>TRINITY_DN112721_c0_g1_i1 from sample A3 / Example unspliced isoform:TATCAATGGACCTGATTGTTTGAATGGATTCAATATGTCTATAATTTTAGCATACCTAACAACAGAAGAAGGCAGAAAGCGTGTCACAGGCCAAATGACAGGGTTTCAGGCCTTTCGTGTTGTCATAGACTTCATTGCGAATTCCAGTACTTTAGAGAAGGGTATTTTCATGCAACCTAAGCCTGTCAGCAATGTGTCAT
TGGAGCTGAAGAGAAGGCTTCTACAATCTTTTGATGTTGTAATATGCGATCCAATCGGATATCTTAACTTGGCATTTCGAATGACCAAGAGTGGATTGGTTGAGCTTGTGGATGAGGCAGCACGTACCCTGACATGTATGAACAAATGCAAGGACAAGGGATTTGAAGAGGTGTTCATGACTAGAATAGACTTTCCTGCA
AAGTTTGATTACCACGCCAGAATCATTCCTGTGGATAATGATCATATGAAGCCACTGAATATATGCATGGACAAGGAACACTTGAGAGTCTATGAAAAACAAGTAGAATTATTACTTTCCAAGGGCTTGGGGGAAAGGGCACGTCTTGTTCGCGTTCTTCATAGAAGCATACCTGCAAATTGGGATATAGATGAGGGACT
TGCATGTTTAGGTAAAGTTCCACTTCTTGTTGGCATTTTGATAAGTGATTTTGAGAAAGCTTTTCGAATGACTGATGTGGGTCCAAGTGCAGACAATAAAACTGAGTCTGCCAAGTTCAGAAGCTTTTGGGGAGAAAAATCTGAATTGCGTCGGTTTAAGGATGGAATAATTGCAGAAACAGCAGTATGGGAATGTGAAC
ACTGGGAGAAACATTTAATAATCAAGAAGATAATGGAATACACTCTTTGTCGGCATCTGTCTTTATCCTCCCAAGATATTTCTATTGTTGGAGACCAGTTGGATTTTACATTATTGCAGGAAGGCAAAGACCCAATTGCTTCAACTCCAACTTTGCTGGACGCATTAGATGTTCTATCCAAATACTTGCGGGGTGTGGAG
GACATGCCATTACGAATCTCTAGTGTTCAGCCCCTAGATTCAGCATTTAGGCACACTTCAGTATTCCCTCCAATGCCTCATCCTTTTGCCGGAGAGAGGGAAAAACAGCAGTCTCGCGAGATATTAGTGCCAACCTGTGTCCAAACTCTGGAGGTCATGATTCAATTGGAAGGTTCTGGGAAGTGGCCTATTGGTGAGAT
TGCAATTGAGAAAACCAAATCTGCTTTCTGTCTCAAAATTGCTGAGAGgtaggttaaatttacttgcatattggttagacccattaattgcatgcatatcaaaattgttttcctagtctactgggtaggtgtttgatacatgattatttttgacataacatagatagtaaatgagaaaacagatgatgatttccgaatga
attttcaattttcaagcatgtttggatataaagacaatatatggaaacttggtttcttaagctatatggtttctcagcttttatttttaattcttatttctagTATGCAGAAGCGTTGGGGCATAGTGTCTATCGCTGCTGAAGATGCTGTAGATTTGCTAATGGCTGGGTTTGCATTCCGTCTCAGGATTTTGTATGAG
AAAGATAAAAGTTTGATAAAGAAACAAGGTCTGGATCACACCATGGCCATTCATTTGTCTGTTAGGCTTGCTAAAATAGTTATCAGATATGAGTTTTCTTGGTAACCCAAATTTATTCATGTGTAATCCCCTAGAAAGATACTGATAATTATGATGAAGTGTACTTAGGTCTTTTTGGTGTGATGCCTGTCGGAAATCTA
CAAAATAGTAATCTTGTTCCCTTGGAGAAAGATTTGCTACTTCGTAGCCAGCATTCCAGCATGTTAAATGGCTTGCAGGGGTTGCATCCAGCTTATGGGCCAACTGTGCGGCTTGCCAAAAGATGGATTTGTTCGCATATGCTTTCTGGAATTTTGGCAGATGAAGCGGTGGAGCTATTGGTTGCATATCTGTTTGTCAG
GCCATTCCCATTCCATGTTCCTTGTTCACGCGTGACAGGTTTCTTAAGGTTTCTGCGTCTTGTTGCTTATCATGACTGGGCCCTCTCTCCTTTAATTGTTGATGTCAATGGGGACTTAACAGTGAAGGAAGAAGGTCAAATTACGGCCCAGTTTATTGCCAAACGAAAAGTCTCTCCGGGAGAATCTCATGCAATTAATG
CAGGACCAGCAATGTACATAGCAACCCCATATGATTGGGAATCAGAGAGTTGGACCTCATTCTCTCCAGACAATCTTGGTCTTAAAAGGCTTATTGCATATGCTAGAAGCAGTGATGAACTTTTAACTCGCCTCATTGGAGGAGAGGTACAGGATGGGTGGGAGTCCTTGTTCCGTACACCTTTACAGTGCTATGATGCC
TTGATTATACTTCACAGAGATAAATTGGCCTATCCAAGTCAAATGTTGTTTAATGCTGATCTTAAGCAAGGATCACTGCCTGTGGCAACCCAGAAAGCAAGCAAGGATTTTTCTGCATATATTTCTCCGGCGGTGATTAGGAGGGGCTTTCAAGAAGCTAAGAAGCATTTGCTAGTTGGCTTTGATCCAGTGAAATATTT
CCTGCATGACCTGAAGACTGACATCCCAAAAGTTTTTAATATATGGCATGATGCTTTTGGAAGTGAGGTTATCGGGCTAACATGGAACAAGGAATATTTCTTTTCAAAGG
Intron 2 GTCTGGATCA ... GTGTACTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.52 | 11 | 1 | 4 |
| A2 | 47.17 | 14 | 20 | 5 |
| A3 | 39.53 | 13 | 10 | 7 |
| A4 | 27.03 | 27 | 4 | 16 |
| A5 | 50 | 5 | 4 | 6 |
| A6 | 25.93 | 10 | 4 | 3 |
| A7 | 14.29 | 6 | 2 | 0 |
| A8 | 25.93 | 10 | 0 | 7 |
| A9 | 23.08 | 10 | 1 | 5 |
| A10 | 11.11 | 12 | 2 | 1 |
>TRINITY_DN112721_c0_g1_i5 from sample A3 / Example spliced isoformCTAACAGACAAATGAATGGCCATGGTGTGATCCAGACCTTGTTTCTTTATCAAACTTTTATCTTTCTCAAAATTGCTGAGAGTATGCAGAAGCGTTGGGGCATAGTGTCTATCGCTGCTGAAGATGCTGTAGATTTGCTAATGGCTGGGTTTGCATTCCGTCTCAGGATTTTGTATGAGAAAGATAAAAGTTTGATAAAG
AAACAAGGTCTTTTTGGTGTGATGCCTGTCGGAAATCTACAAAATAGTAATCTTGTTCCCTTGGAGAAAGATTTGCTACTTCGTAGCCAGCATTCCAGCATGTTAAATGGCTTGCAGGGGTTGCATCCAGCTTATGGGCCAACTGTGCGGCTTGCCAAAAGATGGATTTGTTCGCATATGCTTTCTGGAATTTTGGCAGA
TGAAGCGGTGGAGCTATTGGTTGCATATCTGTTTGTCAGGCCATTCCCATTCCATGTTCCTTGTTCACGCGTGACAGGTTTCTTAAGGTTTCTGCGTCTTGTTGCTTATCATGACTGGGCCCTCTCTCCTTTAATTGTTGATGTCAATGGGGACTTAACAGTGAAGGAAGAAGGTCAAATTACGGCCCAGTTTATTGCCA
AACGAAAAGTCTCTCCGGGAGAATCTCATGCAATTAATGCAGGACCAGCAATGTACATAGCAACCCCATATGATTGGGAATCAGAGAGTTGGACCTCATTCTCTCCAGACAATCTTGGTCTTAAAAGGCTTATTGCATATGCTAGAAGCAGTGATGAACTTTTAACTCGCCTCATTGGAGGAGAGGTACAGGATGGGTGG
GAGTCCTTGTTCCGTACACCTTTACAGTGCTATGATGCCTTGATTATACTTCACAGAGATAAATTGGCCTATCCAAGTCAAATGTTGTTTAATGCTGATCTTAAGCAAGGATCACTGCCTGTGGCAACCCAGAAAGCAAGCAAGGATTTTTCTGCATATATTTCTCCGGCGGTGATTAGGAGGGGCTTTCAAGAAGCTAA
GAAGCATTTGCTAGTTGGCTTTGATCCAGTGAAATATTTCCTGCATGACCTGAAGACTGACATCCCAAAAGTTTTTAATATATGGCATGATGCTTTTGGAAGTGAGGTTATCGGGCTAACATGGAACAAGGAATATTTCTTTTCAAAGG
>TRINITY_DN112721_c0_g1_i1 from sample A3 / Example unspliced isoform:TATCAATGGACCTGATTGTTTGAATGGATTCAATATGTCTATAATTTTAGCATACCTAACAACAGAAGAAGGCAGAAAGCGTGTCACAGGCCAAATGACAGGGTTTCAGGCCTTTCGTGTTGTCATAGACTTCATTGCGAATTCCAGTACTTTAGAGAAGGGTATTTTCATGCAACCTAAGCCTGTCAGCAATGTGTCAT
TGGAGCTGAAGAGAAGGCTTCTACAATCTTTTGATGTTGTAATATGCGATCCAATCGGATATCTTAACTTGGCATTTCGAATGACCAAGAGTGGATTGGTTGAGCTTGTGGATGAGGCAGCACGTACCCTGACATGTATGAACAAATGCAAGGACAAGGGATTTGAAGAGGTGTTCATGACTAGAATAGACTTTCCTGCA
AAGTTTGATTACCACGCCAGAATCATTCCTGTGGATAATGATCATATGAAGCCACTGAATATATGCATGGACAAGGAACACTTGAGAGTCTATGAAAAACAAGTAGAATTATTACTTTCCAAGGGCTTGGGGGAAAGGGCACGTCTTGTTCGCGTTCTTCATAGAAGCATACCTGCAAATTGGGATATAGATGAGGGACT
TGCATGTTTAGGTAAAGTTCCACTTCTTGTTGGCATTTTGATAAGTGATTTTGAGAAAGCTTTTCGAATGACTGATGTGGGTCCAAGTGCAGACAATAAAACTGAGTCTGCCAAGTTCAGAAGCTTTTGGGGAGAAAAATCTGAATTGCGTCGGTTTAAGGATGGAATAATTGCAGAAACAGCAGTATGGGAATGTGAAC
ACTGGGAGAAACATTTAATAATCAAGAAGATAATGGAATACACTCTTTGTCGGCATCTGTCTTTATCCTCCCAAGATATTTCTATTGTTGGAGACCAGTTGGATTTTACATTATTGCAGGAAGGCAAAGACCCAATTGCTTCAACTCCAACTTTGCTGGACGCATTAGATGTTCTATCCAAATACTTGCGGGGTGTGGAG
GACATGCCATTACGAATCTCTAGTGTTCAGCCCCTAGATTCAGCATTTAGGCACACTTCAGTATTCCCTCCAATGCCTCATCCTTTTGCCGGAGAGAGGGAAAAACAGCAGTCTCGCGAGATATTAGTGCCAACCTGTGTCCAAACTCTGGAGGTCATGATTCAATTGGAAGGTTCTGGGAAGTGGCCTATTGGTGAGAT
TGCAATTGAGAAAACCAAATCTGCTTTCTGTCTCAAAATTGCTGAGAGGTAGGTTAAATTTACTTGCATATTGGTTAGACCCATTAATTGCATGCATATCAAAATTGTTTTCCTAGTCTACTGGGTAGGTGTTTGATACATGATTATTTTTGACATAACATAGATAGTAAATGAGAAAACAGATGATGATTTCCGAATGA
ATTTTCAATTTTCAAGCATGTTTGGATATAAAGACAATATATGGAAACTTGGTTTCTTAAGCTATATGGTTTCTCAGCTTTTATTTTTAATTCTTATTTCTAGTATGCAGAAGCGTTGGGGCATAGTGTCTATCGCTGCTGAAGATGCTGTAGATTTGCTAATGGCTGGGTTTGCATTCCGTCTCAGGATTTTGTATGAG
AAAGATAAAAGTTTGATAAAGAAACAAGgtctggatcacaccatggccattcatttgtctgttaggcttgctaaaatagttatcagatatgagttttcttggtaacccaaatttattcatgtgtaatcccctagaaagatactgataattatgatgaagtgtacttagGTCTTTTTGGTGTGATGCCTGTCGGAAATCTA
CAAAATAGTAATCTTGTTCCCTTGGAGAAAGATTTGCTACTTCGTAGCCAGCATTCCAGCATGTTAAATGGCTTGCAGGGGTTGCATCCAGCTTATGGGCCAACTGTGCGGCTTGCCAAAAGATGGATTTGTTCGCATATGCTTTCTGGAATTTTGGCAGATGAAGCGGTGGAGCTATTGGTTGCATATCTGTTTGTCAG
GCCATTCCCATTCCATGTTCCTTGTTCACGCGTGACAGGTTTCTTAAGGTTTCTGCGTCTTGTTGCTTATCATGACTGGGCCCTCTCTCCTTTAATTGTTGATGTCAATGGGGACTTAACAGTGAAGGAAGAAGGTCAAATTACGGCCCAGTTTATTGCCAAACGAAAAGTCTCTCCGGGAGAATCTCATGCAATTAATG
CAGGACCAGCAATGTACATAGCAACCCCATATGATTGGGAATCAGAGAGTTGGACCTCATTCTCTCCAGACAATCTTGGTCTTAAAAGGCTTATTGCATATGCTAGAAGCAGTGATGAACTTTTAACTCGCCTCATTGGAGGAGAGGTACAGGATGGGTGGGAGTCCTTGTTCCGTACACCTTTACAGTGCTATGATGCC
TTGATTATACTTCACAGAGATAAATTGGCCTATCCAAGTCAAATGTTGTTTAATGCTGATCTTAAGCAAGGATCACTGCCTGTGGCAACCCAGAAAGCAAGCAAGGATTTTTCTGCATATATTTCTCCGGCGGTGATTAGGAGGGGCTTTCAAGAAGCTAAGAAGCATTTGCTAGTTGGCTTTGATCCAGTGAAATATTT
CCTGCATGACCTGAAGACTGACATCCCAAAAGTTTTTAATATATGGCATGATGCTTTTGGAAGTGAGGTTATCGGGCTAACATGGAACAAGGAATATTTCTTTTCAAAGG