NA ----> NA

Intron 1 GTAGTCATTG ... GATTATTAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	39.71	36.7	24	24
A2	36.84	28.3	12	21
A3	40.02	24	10	22
A4	31.31	23	8.7	12
A5	35.37	28.7	11.3	20
A6	31.42	204	57	130
A7	34.17	196	73.3	130
A8	35.2	347.3	130.3	247
A9	34.57	227.7	101.3	139
A10	38.18	116.3	62.7	81

>TRINITY_DN110950_c5_g2_i5 from sample A5 / Example spliced isoform

AGGGTGGAGTGATAAGGTGAGGCAGTAAATAACAGCAGATCGGATTGTGAGGGTGGAGTGATAAGGTGAGGCAGTAAATAACAGCAGATCGGATTGTGAGGGTGGAGTGATAAGGTGAGGCCGTAAATAACAGCAGATCAGATGATCAGGTGTTTCTTAGCCTCCCAAATACAGTAAGTGCATAGGCAAAGCTGCTTCAG
ATGCCGTTGAATTTCAACAGCATACATGAAGCGACCATACATGCTGCTTCAGATGCCCTTGAATTTCAAGATTTCAGGTGAAGTGGAGGATGTTTTTGACAAAAAGTCACACATGAAAAGAAGATGGAGAATATTTAAAATAGAGAAATACTTGAAGCCAGTCATGAGAATTAAATCTCATTTTCTAAATTGTAAATAAT
ATTATCATTTTTTTATGTAACACCCAAGACCAG

>TRINITY_DN110950_c5_g2_i3 from sample A5 / Example unspliced isoform:

AGGGTGGAGTGATAAGGTGAGGCAGTAAATAACAGCAGATCGGATTGTGAGGGTGGAGTGATAAGGTGAGGCAGTAAATAACAGCAGATCGGATTGTGAGGGTGGAGTGATAAGGTGAGGCCGTAAATAACAGCAGATCAGATGATCAGGTGTTTCTTAGCCTCCCAAATACAGTAAGTGCATAGGCAAAGCTGCTTCAG
ATGCCGTTGAATTTCAACAGCATACATGAAGCGACCATACATGCTGCTTCAGATGCCCTTGAATTTCAAGATTTCAGgtagtcattgtgatgttgaagtgcatgattattaagGTGAAGTGGAGGATGTTTTTGACAAAAAGTCACACATGAAAAGAAGATGGAGAATATTTAAAATAGAGAAATACTTGAAGCCAGTCA
TGAGAATTAAATCTCATTTTCTAAATTGTAAATAATATTATCATTTTTTTATGTAACACCCAAGACCAG

Intron 2 GTAATGAGGA ... GATTATTAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	35.29	33	1	18
A2	48.08	27	0	25
A3	41.03	23	2	16
A4	50	20	1	20
A5	34.15	27	0	14
A6	34.85	200	0	107
A7	34.05	184	9	95
A8	35.89	334	2	187
A9	33.33	214	5	107
A10	31.29	112	4	51

>TRINITY_DN44955_c5_g1_i11 from sample A8 / Example spliced isoform

GTAAGTGCATAGGCAAAGCTGCTTCAGATGCCGTTGAATTTCAACAGCATACATGAAGCGACCATACATGCTGCTTCAGATGCCCTTGAATTTCAAGATTTCAGGTGAAGTGGAGGATGTTTTTGACAAAAAGTCACACATGAAAAGAAGATGGAGAATATTTAAAATAGAGAAATACTTGAAGCCAGTCATGAGAATTA
AATCTCATTTTCTAAATTGTAAATAATATTATCATTTTTTTATGTAACACCCAAGACCAGTATATTAATGAAATTATCATTTTTTTTTAGAGAAGGGGCTTTTTGCCCTTTCTCAAATCTCTCAAGGATAGCAATGGCCAAAGCTATCTTTGAGAAGTCTATTCTTATGGTTTGATTTAATTTTTGCTTTTAAATTTTAA
CTTTTAGTTTGTTGTTTA

>TRINITY_DN44955_c5_g1_i9 from sample A8 / Example unspliced isoform:

TCGAATTTCAAGGCGATACATGAAGCAACCATACATGCTCCTTCAGATACTCTTGAATTTCAAGATTTCAGgtaatgaggaggggctcattcttgttagcatgttgcagcattttatataatgaagaggggctcattcttcttagcattcttcatggatattgggatgttttataaaattttaaattatttttagttttt
gcctggtaataaggaaataaaaaggtcaagataggtttaaagggttagagttattttgtacgagtccattcatcatttggattattttccattttgttttttacatatttagtgggtttatttctctttttacctatttggaatacagaaattgtgtagactaaataaaatgaggtttacttgtcttgcttgtggttgtt
attttgtgagtattgatgtgagaaagtagattatgcatgtaatagtctatatatgttgaaactgtatgttaaaatatggctattgcatgcaggtagtcattgtgatgttgaagtgcatgattattaagGTGAAGTGGAGGATGTTTTTGACAAAAAGTCACACATGAAAAGAAGATGGAGAATATTTAAAATAGAGAAAT
ACTTGAAGCCAGTCATGAGAATTAAATCTCATTTTCTAAATTGTAAATAATATTATCATTTTTTTATGTAACACCCAAGACCAGTATATTAATGAAATTATCATTTTTTTTTAGAGAAGGGGCTTTTTGCCCTTTCTCAAATCTCTCAAGGATAGCAATGGCCAAAGCTATCTTTGAGAAGTCTATTCTTATGGTTTGAT
TTAATTTTTGCTTTTAAATTTTAACTTTTAGTTTGTTGTTTA