sp|O64518|MCA5_ARATH ----> Metacaspase-5

Intron 1 GTAACTTTCA ... TATGGGCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	0
A2	50	2	2	2
A3	80	1	4	1
A4	100	0	2	0
A5	100	0	7	0
A6	85	3	17	0
A7	84.85	5	28	3
A8	72.44	14.5	38	4
A9	80.9	25.5	108	8
A10	71.59	13.5	34	5

>TRINITY_DN44289_c1_g4_i7 from sample A9 / Example spliced isoform

CCCCTCATCAACATGGCGCATGCTGAAAATTGGCGGACGGTAAAAATTGGATGCCTGCAAGATATGTCGAAGAAGAATGGCAATCCACTTCCAGTTGTTGTCAAACATGTAACATGTAACAGGTGCAGTGTAGAAAGCCTCTGAGGAGCACTGGTTAAGACACCGGGATCTGTAAAAGCAAAGCTGGATTGTATTTCCAG


ATCCAGGCTAAGTAAATCAGATCGGGATGCGAAATTGTTGGTAACAGGATTTTTTTGACCATGGATCAAATAAAAGAACCGCAAAATTGGAGACTAGGGTGGAGACGAAGGACTACCACTCCCTTACTTCGTCTCCTTGCAGTCCCAATTCTACTACGGATTTCAAAGAAGTGAGTAGATTGTGTCTTGGCATGGGAGAA
ATAAAAGATACGATTCGCATGGAGGGACTGCAGAAGATTTTCTTGCACCCAAAACCAATTCCCTATTGGTGATGGGCTTCCCATATTGTTTAAGAGTTCCCTTACTGAATGCTCCAC

>TRINITY_DN44289_c1_g4_i5 from sample A9 / Example unspliced isoform:

CCCCTCATCAACATGGCGCATGCTGAAAATTGGCGGACGGTAAAAATTGGATGCCTGCAAGATATGTCGAAGAAGAATGGCAATCCACTTCCAGGAGTTGTCAAACATGTAACATGTAATAGGTGCGGTGTAGAAAGCCTCTGAGGAGCACTGGTTAAGACACCGGGATCTGTAAAAGCAAAGCTGGATTGTATTTCCAG


gtaactttcaattcctctgcaatactgcttgtaaattgtggatagaatccttgtattatggatcggacttaaatgatgaattatatcatcgatgtggtttatgcattttgattcatgctgttaaaaaatgatggatcggaaatttaagagaatgtattgtagagttcttgaagcctgggttcagaatgtttgggaaatta
tatttttgatacaaattggggcagatatcttgattcggtcattttttattaatggatgtagatatttttaaatatgtcgaaccgatgttttaattatatgttgttgccttgttggcattacattgattatgggctagATCCAGGCTAAGTAAATCAGATCGGGATGCGAAATTGTTGGTAACAGGATTTTTTTGACCATG
GATCAAATAAAAGAACCGCAAAATTGGAGACTAGGGTGGAGACGAAGGACTACCACTCCCTTACTTCGTCTCCTTGCAGTCCCAATTCTACTACGGATTTCAAAGAAGTGAGTAGATTGTGTCTTGGCATGGGAGAAATAAAAGATACGATTCGCATGGAGGGACTGCAGAAGATTTTCTTGCACCCAAAACCAATTCCC
TATTGGTGATGGGCTTCCCATATTGTTTAAGAGTTCCCTTACTGAATGCTCCAC