NA ----> NA
Intron 1 GTAAGATATC ... TGGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.76 | 73.8 | 12.8 | 93 |
| A2 | 54.13 | 100 | 1 | 118 |
| A3 | 54.07 | 85.8 | 4.7 | 101 |
| A4 | 62.5 | 51 | 6 | 85 |
| A5 | 54.21 | 49 | 3 | 58 |
| A6 | 56.87 | 511.9 | 30 | 675 |
| A7 | 59.99 | 373.5 | 22.2 | 560 |
| A8 | 57.47 | 268.7 | 12 | 363 |
| A9 | 59.91 | 336.6 | 16.9 | 503 |
| A10 | 58.01 | 375 | 16.4 | 518 |
>TRINITY_DN112615_c0_g1_i2 from sample A1 / Example spliced isoformTTGTAAACAAACGCCCCCACATATTGCTGCGGAGATCAATGAAAGTAAGGTACAAGACACCTCGACTCGAGTCAGGAAGACGGACCGTAGAAATTCAATAAAAAATGGAAAGAGCATATTGTGGATTGGGTTGTTTTCTGTTGGGGAAAATAAGGTAGAATTGGTCTTGGATCTTTTTCCAATTGTATGCACAACAGGGG
AAGGAAAATACACAAGGGATTGGATCGAGACGATGGCAGTTGAGAGCTTTGGTGCCACAGTGACATTGAGGGGTGGATTGCCTATCTGGGATTGCAATAGGATCGGGCACCCTCCTCTGTGTTCAAGGCGCAGAAGGCTTGCTGTATCTGCTGTCAACCAAAAATCAGATGACGAAAGGAACACCGAGGAGGCCAAGAAG
ACAAGCAGTTTTCCCCTGATAAAATTCCATGGCAAAACTACATCCTTACAGCCCCTCTCAAAGGAGACAGCCATGGGGTTGGTGCTAAAGGCTGCTGGAGGCAGAGGATGGACCACGGGATCTGGAATGGAAGGTCCTGCGGTATCTGCAGATCCTAATGAAAACACTGAAATGGCTGAAAAGTCTGTTTATCCATGGTC
TCTGTTTACCAAATCCCCTCGTCGACGAATGAGAGTTGCATTCACTTGTGGTGTTTGTGGGCAACGTACAACTCGTGCAATCAATCCACATGCCTACACTGATGGAACTGTTTTTGTGCAGTGTGCAGGATGCGATGTTTACCATAAACTGGTGGATAATCTCAACCTCTTTCACGAATTGAAGGGCAGCATATACCCAA
TGTTTGGGAATACAAGTTCAAAGAAGCCATCATCTTTCAAGTTTCTTGATATGGATGACTTTCCCTTATTTTAAGAGAGATCGAATCCATTGGGAGATTAAGCTTATTACTCCCCACTAGAGAAGCTCTGCACATAAAGTGAAAGGTAAAAAGATCATTCGCATTTCAATAATCGGTCACATCCGATTGTTTTGAGGTCA
CAAATATCCTACAGATCAGAATCTACTTTTACATTGCTCTTCTTTGTAGGCAGCGTATTGCGATTCTTGTTATGTTTGCTGTGAAGTATATTGGCAATCAATCTAGCAGCTATTATCAAATATTATTGTAAATAATCAAATATGGACTAAACATGATGTCTAAATATGCGTATTCTGCAATTTAGCTCTTGCTGGTGTAT
ATTCTCTGGTTGATATTCATTCTGTGTCTCTATATTGTGATTATGTGACATAGTCCGTGGAACATCTTTACTTTCTCGTGCTTGTGAAATAATCATTCCAGGATATTCCCTTGAATTATTTTGTGGGTTAATAGTATTCATGTAGTAATTACTCTAATAGAGTTATCATAACTGAGGCTTTCAAGTCAATCAAAAGTACT
GATGTAACCGTTGTCAGCTGTTTCCTCCATTTCAT
>TRINITY_DN112615_c0_g1_i1 from sample A1 / Example unspliced isoform:TTGTAAACAAACGCCCCCACATATTGCTGCGGAGATCAATGAAAGTAAGGTACAAGACACCTCGACTCGAGTCAGGAAGACGGACCGTAGAAATTCAATAAAAAATgtaagatatcaaataaaatagtgacacattgatcaaagataagcgtacaatatcaatacagcattgagaaattggttactttcatattcttgat
atctacatgtttgtgtgggcacctgggtcagacgtcggaaactaagggtctgagaattgggttgcagGGAAAGAGCATATTGTGGATTGGGTTGTTTTCTGTTGGGGAAAATAAGGTAGAATTGGTCTTGGATCTTTTTCCAATTGTATGCACAACAGGGGAAGGAAAATACACAAGGGATTGGATCGAGACGATGGCAG
TTGAGAGCTTTGGTGCCACAGTGACATTGAGGGGTGGATTGCCTATCTGGGATTGCAATAGGATCGGGCACCCTCCTCTGTGTTCAAGGCGCAGAAGGCTTGCTGTATCTGCTGTCAACCAAAAATCAGATGACGAAAGGAACACCGAGGAGGCCAAGAAGACAAGCAGTTTTCCCCTGATAAAATTCCATGGCAAAACT
ACATCCTTACAGCCCCTCTCAAAGGAGACAGCCATGGGGTTGGTGCTAAAGGCTGCTGGAGGCAGAGGATGGACCACGGGATCTGGAATGGAAGGTCCTGCGGTATCTGCAGATCCTAATGAAAACACTGAAATGGCTGAAAAGTCTGTTTATCCATGGTCTCTGTTTACCAAATCCCCTCGTCGACGAATGAGAGTTGC
ATTCACTTGTGGTGTTTGTGGGCAACGTACAACTCGTGCAATCAATCCACATGCCTACACTGATGGAACTGTTTTTGTGCAGTGTGCAGGATGCGATGTTTACCATAAACTGGTGGATAATCTCAACCTCTTTCACGAATTGAAGGGCAGCATATACCCAATGTTTGGGAATACAAGTTCAAAGAAGCCATCATCTTTCA
AGTTTCTTGATATGGATGACTTTCCCTTATTTTAAGAGAGATCGAATCCATTGGGAGATTAAGCTTATTACTCCCCACTAGAGAAGCTCTGCACATAAAGTGAAAGGTAAAAAGATCATTCGCATTTCAATAATCGGTCACATCCGATTGTTTTGAGGTCACAAATATCCTACAGATCAGAATCTACTTTTACATTGCTC
TTCTTTGTAGGCAGCGTATTGCGATTCTTGTTATGTTTGCTGTGAAGTATATTGGCAATCAATCTAGCAGCTATTATCAAATATTATTGTAAATAATCAAATATGGACTAAACATGATGTCTAAATATGCGTATTCTGCAATTTAGCTCTTGCTGGTGTATATTCTCTGGTTGATATTCATTCTGTGTCTCTATATTGTG
ATTATGTGACATAGTCCGTGGAACATCTTTACTTTCTCGTGCTTGTGAAATAATCATTCCAGGATATTCCCTTGAATTATTTTGTGGGTTAATAGTATTCATGTAGTAATTACTCTAATAGAGTTATCATAACTGAGGCTTTCAAGTCAATCAAAAGTACTGATGTAACCGTTGTCAGCTGTTTCCTCCATTTCAT
Intron 2 GTAAGATATC ... CCTGGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 7 | 13 | 21 |
| A2 | 53.33 | 7 | 1 | 8 |
| A3 | 62.07 | 11 | 5 | 18 |
| A4 | 56.25 | 14 | 6 | 18 |
| A5 | 50 | 13 | 3 | 13 |
| A6 | 57.08 | 94 | 31 | 125 |
| A7 | 56.32 | 83 | 23 | 107 |
| A8 | 55 | 54 | 12 | 66 |
| A9 | 58.9 | 67 | 18 | 96 |
| A10 | 52.46 | 87 | 17 | 96 |
>TRINITY_DN104736_c0_g1_i1 from sample A3 / Example spliced isoformTATTGGCATCTTGACAATAACATCAACAGGTGGACAAGCAAAAGCCACAAATGGTATAACAATATTGTAACGATGGTCAGGTAGATGTAGATGTGAAGCAATTTTGTAAACAAACGCCCCCACATATTGCTGCGGAGATCAATGAAAGTAAGGTACAAGACACCTCGACTCGAGTCAGGAAGACGGACCGTAGAAATTCA
ATAAAAAATACGTCGGAAACTAAGGGTCTGAGAATTGGGTTGCAGGGAAAGAGCATATTGTGGATTGGGTTGTTTTCTGTTGGGGAAAATAAGGTAGAATTGGTCTTGGATCTTTTTCCAATTGTATGCACAACAGGGGAAGGAAAATACACAAGGGATTGGATCGAGACGATGGCAGTTGAGAGCTTTGGTGCCACAGT
GACATTGAGGGGTGGATTGCCTATCTGGGATTGCAATAGGATCGGGCACCCTCCTCTGTGTTCAAGGCGCAGAAGGCTTGCTGTATCTGCTGTCAACCAAAAATCAGATGACGAAAGGAACACCGAGGAGGCCAAGAAGACAAGCAGTTTTCCCCTGATAAAATTCCATGGCAAAACTACATCCTTACAGCCCCTCTCAA
AGGAGACAGCCATGGGGTTGGTGCTAAAGGCTGCTGGAGGCAGAGGATGGACCACGGGATCTGGAATGGAAGGTCCTGCGGTATCTGCAGATCCTAATGAAAACACTGAAATGGCTGAAAAGTCTGTTTATCCATGGTCTCTGTTTACCAAATCCCCTCGTCGACGAATGAGAGTTGCATTCACTTGTGGTGTTTGTGGG
CAACGTACAACTCGTGCAATCAATCCACATGCCTACACTGATGGAACTGTTTTTGTGCAGTGTGCAGGATGCGATGTTTACCATAAACTGGTGGATAATCTCAACCTCTTTCACGAATTGAAGGGCAGCATATACCCAATGTTTGGGAATACAAGTTCAAAGAAGCCATCATCTTTCAAGTTTCTTGATATGGATGACTT
TCCCTTATTTTAAGAGAGATCGAATCCATTGGGAGATTAAGCTTATTACTCCCCACTAGAGAAGCTCTGCACATAAAGTGAAAGGTAAAAAGATCATTCGCATTTCAATAATCGGTCACATCCGATTGTTTTGAGGTCACAAATATCCTACAGATCAGAATCTACTTTTACATTGCTCTTCTTTGTAGGCAGCGTATTGC
GATTCTTGTTATGTTTGCTGTGAAGTATATTGGCAATCAATCTAGCAGCTATTATCAAATATTATTGTAAATAATCAAATATGGACTAAACATGATGTCTAAATATGCGTATTCTGCAATTTAGCTCTTGCTGGTGTATATTCTCTGGTTGATATTCATTCTGTGTCTCTATATTGTGATTATGTGACATAGTCCGTGGA
ACATCTTTACTTTCTCGTGCTTGTGAAATAATCATTCCAGGATATTCCCTTGAATTATTTTGTGGGTTAATAGTATTCATGTAGTAATTACTCTAATAGAGTTATCATAACTGAGGCTTTCAAGTCAATCAAAAGTACTGATGTAACCGTTGTCAGCTGTTTCCTCCATTTCATCTTTTCTCTCTGTGACCTGATTTTGC
CTACTGCATTTATCTTCAACTTAAGATAATTCAGGGAATGATAGCAATCAGGCAGTGTACACTGTAAACTGAAGTAATGATGTGG
>TRINITY_DN104736_c0_g1_i2 from sample A3 / Example unspliced isoform:TATTGGCATCTTGACAATAACATCAACAGGTGGACAAGCAAAAGCCACAAATGGTATAACAATATTGTAACGATGGTCAGGTAGATGTAGATGTGAAGCAATTTTGTAAACAAACGCCCCCACATATTGCTGCGGAGATCAATGAAAGTAAGGTACAAGACACCTCGACTCGAGTCAGGAAGACGGACCGTAGAAATTCA
ATAAAAAATgtaagatatcaaataaaatagtgacacattgatcaaagataagcgtacaatatcaatacagcattgagaaattggttactttcatattcttgatatctacatgtttgtgtgggcacctgggtcagACGTCGGAAACTAAGGGTCTGAGAATTGGGTTGCAGGGAAAGAGCATATTGTGGATTGGGTTGTTT
TCTGTTGGGGAAAATAAGGTAGAATTGGTCTTGGATCTTTTTCCAATTGTATGCACAACAGGGGAAGGAAAATACACAAGGGATTGGATCGAGACGATGGCAGTTGAGAGCTTTGGTGCCACAGTGACATTGAGGGGTGGATTGCCTATCTGGGATTGCAATAGGATCGGGCACCCTCCTCTGTGTTCAAGGCGCAGAAG
GCTTGCTGTATCTGCTGTCAACCAAAAATCAGATGACGAAAGGAACACCGAGGAGGCCAAGAAGACAAGCAGTTTTCCCCTGATAAAATTCCATGGCAAAACTACATCCTTACAGCCCCTCTCAAAGGAGACAGCCATGGGGTTGGTGCTAAAGGCTGCTGGAGGCAGAGGATGGACCACGGGATCTGGAATGGAAGGTC
CTGCGGTATCTGCAGATCCTAATGAAAACACTGAAATGGCTGAAAAGTCTGTTTATCCATGGTCTCTGTTTACCAAATCCCCTCGTCGACGAATGAGAGTTGCATTCACTTGTGGTGTTTGTGGGCAACGTACAACTCGTGCAATCAATCCACATGCCTACACTGATGGAACTGTTTTTGTGCAGTGTGCAGGATGCGAT
GTTTACCATAAACTGGTGGATAATCTCAACCTCTTTCACGAATTGAAGGGCAGCATATACCCAATGTTTGGGAATACAAGTTCAAAGAAGCCATCATCTTTCAAGTTTCTTGATATGGATGACTTTCCCTTATTTTAAGAGAGATCGAATCCATTGGGAGATTAAGCTTATTACTCCCCACTAGAGAAGCTCTGCACATA
AAGTGAAAGGTAAAAAGATCATTCGCATTTCAATAATCGGTCACATCCGATTGTTTTGAGGTCACAAATATCCTACAGATCAGAATCTACTTTTACATTGCTCTTCTTTGTAGGCAGCGTATTGCGATTCTTGTTATGTTTGCTGTGAAGTATATTGGCAATCAATCTAGCAGCTATTATCAAATATTATTGTAAATAAT
CAAATATGGACTAAACATGATGTCTAAATATGCGTATTCTGCAATTTAGCTCTTGCTGGTGTATATTCTCTGGTTGATATTCATTCTGTGTCTCTATATTGTGATTATGTGACATAGTCCGTGGAACATCTTTACTTTCTCGTGCTTGTGAAATAATCATTCCAGGATATTCCCTTGAATTATTTTGTGGGTTAATAGTA
TTCATGTAGTAATTACTCTAATAGAGTTATCATAACTGAGGCTTTCAAGTCAATCAAAAGTACTGATGTAACCGTTGTCAGCTGTTTCCTCCATTTCATCTTTTCTCTCTGTGACCTGATTTTGCCTACTGCATTTATCTTCAACTTAAGATAATTCAGGGAATGATAGCAATCAGGCAGTGTACACTGTAAACTGAAGT
AATGATGTGG