sp|X5JB51|SECAB_ARATH ----> Exocyst complex component SEC10b
Intron 1 GTAAGTACAA ... GCCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.95 | 48 | 11 | 10 |
| A2 | 18.45 | 42 | 13 | 6 |
| A3 | 24.21 | 36 | 17 | 6 |
| A4 | 13.16 | 33 | 8 | 2 |
| A5 | 29.41 | 6 | 3 | 2 |
| A6 | 21.31 | 24 | 11 | 2 |
| A7 | 18.31 | 58 | 19 | 7 |
| A8 | 21.57 | 40 | 16 | 6 |
| A9 | 11.63 | 38 | 8 | 2 |
| A10 | 19.23 | 42 | 17 | 3 |
>TRINITY_DN103667_c0_g1_i2 from sample A5 / Example spliced isoformTCACATACAAAATATACCCAAAAAAAATGAAAAGGTCTCAATATAATACCTTGAATATTTTATTGGTATCAGACTGTCGAAAATTCATCACAAATTCTTATTGCCTGGTCGCCTTCATTTGCGTTTCCTGTATATCAGCGCAACTCATCTCAGACGTGATGCGATAGAATTGAGCCCGTTAATCAAACAGACATCGCATA
TGGGAACTTTCCCAATTACATTCAACATATTTGGCATTGAAGATCAAATACGCTTTTAGCAATTTGTGGAATCCATTATCATTTCCACTCTTACTCTTGGTGTGTGAAGGGAAGGGAAGCTGCCCCTGCCAGGGTTCAGACGCACCAATTTCCAGCACATCTGCGGTTTCCACGATGCAGGAAAGGAACATTGGAGTTAA
GATGGGGAAAACGGGTAAGGTTACAACATCTTCAAAAGCTTCATCAGCTAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTCAAGGGTGAATTTTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCGTCATTTCAAGAAGATGATACTGAATCTTCGGAGGGAAGAAACAGCACAGGAGGCCAGG
ATGCCACTTCTAATGGGCATATTCGTTTCCCTGCAGAAGCAACAAAAACAAATTCATCATCAGGTCCTCCTATATTTTCTGATGCGGAATCACTTTTGTCTCTTTTCAAGGATTGTCGGAGGGAGTTGGTCGACCTTAGTCACCAGGTTGATGCAAGATTGGGCAATCTTAAGAAGGAAGTTGCTCTTCAAGACTCTAGG
CATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTGATGCCCTATTTGAAAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCAGCAAAGATTGGCGATCATTTACAGAGTGCAGATTCACAGAGAGAAACTGCTAGTCAAACTATAGAACTTATAAGGCACCTTATGGAGTTCAACAGCAGTCC
AGGTGATCTAATGGAACTCTCACCTCTCTTCTCTGATGATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTCCGCTCCTTTGCTGAAGAAGATGTGGGAAGACAGGGAATGGCTGCTGCATCTATCAGGGGCACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTAGCAAACCTACAGGATTATTGTAATG
AATTAGAGAACAGACTCTTGGCTCGTTTTGATGCTGCTTCTCAACGACGGGAATTATCAACCATGGCAGAGTGTGCTAAGATACTGTCTCAGTTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAACGCAGATGCAAAGATGGTTCTTGGAGACCAGGGC
ATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTTCGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTATGGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGC
AAACCCACCACCTATGGAAGAAGGAGGCCTTTTGTTGTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGAATTGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAAC
TATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGCACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTACTGCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTC
GCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGGATCAAGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTAAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAAC
CAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCCATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTG
TTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCAGAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTCCAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTTGAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGGGAAAT
CGCTTGCATAAAGGTTTACTCAATCATTGGCAACGATTCACATTCAGTCCCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTT
TGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAACACATGTATTTCATGAGAAGGCCATTAATGCAATAACTGTATGCAGCTGATCCTTTTCTGCAGATTGCAAATCGCTATGCAAGAAAACATT
TCATAGAGCCTCTCTACATTCATATATGCACATTTGGTCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAATTAATATTTCATATGATGATCAGAGTGATATCTATCTGATTACAAGTACATCCTTTATTCGTC
ATGTTGAAACCAATATATATGAGCAAACTATTTAGCAGTCTGGTAAGGTGGAATTTGGATTGAGTTCCAACATTTAGGTTTGGATGAACA
>TRINITY_DN103667_c0_g1_i10 from sample A5 / Example unspliced isoform:TTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAACGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTTCGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTAT
GGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGAAGAAGGAGGCCTTTTGTTGTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGAAT
TGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGCACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTACT
GCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGGATCAAgtaagtacaatatctgaatttctcaaatatgcatggattttctgctggaa
tcattgtgtgatattaaattccaaggtaacaggatgtggacttgagtaagtgaagatagacacaaaaacagagggaattagtaattacagagtgtgcctttgcagGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTAAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGT
CAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACCAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCCATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGT
CATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCAGAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTCCAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTT
GAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGGGAAATCGCTTGCATAAAGGTTTACTCAATCATTGGCAACGATTCACATTCAGTCCCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTT
TGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAACACATGTATTTCATGAGAAGGCCATTAA
TGCAATAACTGTATGCAGCTGATCCTTTTCTGCAGATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGGTCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAA
TTAATATTTCATATGATGATCAGAGTGATATCTATCTGATTACAAGTACATCCTTTATTCGTCATGTTGAAACCAATATATATGAGCAAACTATTTAGCAGTCTGGTAAGGTGGAATTTGGATTGAGTTCCAACATTTAGGTTTGGATGAACA
Intron 2 GTTATATATA ... GGTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.81 | 23 | 4 | 2 |
| A2 | 10.34 | 26 | 3 | 4 |
| A3 | 20.45 | 35 | 9 | 0 |
| A4 | 30.3 | 23 | 10 | 6 |
| A5 | 0 | 9 | 0 | 0 |
| A6 | 10.53 | 17 | 2 | 0 |
| A7 | 20.83 | 38 | 10 | 0 |
| A8 | 20 | 16 | 4 | 0 |
| A9 | 15.15 | 28 | 5 | 3 |
| A10 | 14.29 | 24 | 4 | 0 |
>TRINITY_DN115462_c0_g1_i1 from sample A2 / Example spliced isoformGCAATATAATACCTTGAATATTTTATTGGTATCAGACTGTCGAAAATTCATCACAAATTCTTATTGCCTGGTCGCCTTCATTTGCGTTTCCTGTATATCAGCGCAACTCATCTCAGACGTGATGCGATAGAATTGAGCCCGTTAATCAAACAGACATCGCATATGGGAACTTTCCCAATTACATTCAACATATTTGGCAT
TGAAGATCAAATACGCTTTTAGCAATTTGTGGAATCCATTATCATTTCCACTCTTACTCTTGGTGTGTGAAGGGAAGGGAAGCTGCCCCTGCCAGGGTTCAGACGCACCAATTTCCAGCACATCTGCGGTTTCCACGATGCAGGAAAGGAACATTGGAGTTAAGATGGGGAAAACGGGTAAGGTTACAACATCTTCAAAA
GCTTCATCAGCTAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTCAAGGGTGAATTTTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCGTCATTTCAAGAAGATGATACTGAATCTTCGGAGGGAAGAAACAGCACAGGAGGCCAGGATGCCACTTCTAATGGGCATATTCGTTTCCCTGCAGA
AGCAACAAAAACAAATTCATCATCAGGTCCTCCTATATTTTCTGATGCGGAATCACTTTTGTCTCTTTTCAAGGATTGTCGGAGGGAGTTGGTCGACCTTAGTCACCAGGTTGATGCAAGATTGGGCAATCTTAAGAAGGAAGTTGCTCTTCAAGACTCTAGGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTG
ATGCCCTATTTGAAAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCAGCAAAGATTGGCGATCATTTACAGAGTGCAGATTCACAGAGAGAAACTGCTAGTCAAACTATAGAACTTATAAGGCACCTTATGGAGTTCAACAGCAGTCCAGGTGATCTAATGGAACTCTCACCTCTCTTCTCTGAT
GATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTCCGCTCCTTTGCTGAAGAAGATGTGGGCAGACAGGGAATGGCTGCTGCATCTATCAGGGGCACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTAGCAAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGGCTCGTTTTGACGCTGC
TTCTCAACGACGGGAATTATCAACCATGGCAGAGTGTGCTAAGATACTGTCTCAGTTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAATGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTT
CGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTATGGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGAAGAAGGAGGCCTTTTGTTG
TATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGAATTGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGC
ACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTACTGCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGG
ATCAAGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTAAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACAAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCC
ATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCA
GAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTCCAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTTGAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGGGAAATCGCTTGCATAAAGGTTTACTCAATCATTGGCAACGAT
TCACATTCAGTCCCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGG
TTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAGCACATGTATTTCATGAGAAGGCCATTAATGCAATAACTGTATGCAGCTGATCCTTTTCTGCAGATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGG
TCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAATTAATATTTCATATGATGATCAGAGTGATATCTATCTGAGT
>TRINITY_DN115462_c0_g1_i2 from sample A2 / Example unspliced isoform:GCAATATAATACCTTGAATATTTTATTGGTATCAGACTGTCGAAAATTCATCACAAATTCTTATTGCCTGGTCGCCTTCATTTGCGTTTCCTGTATATCAGCGCAACTCATCTCAGACGTGATGCGATAGAATTGAGCCCGTTAATCAAACAGACATCGCATATGGGAACTTTCCCAATTACATTCAACATATTTGGCAT
TGAAGATCAAATACGCTTTTAGCAATTTGTGGAATCCATTATCATTTCCACTCTTACTCTTGGTGTGTGAAGGGAAGGGAAGCTGCCCCTGCCAGGGTTCAGACGCACCAATTTCCAGCACATCTGCGGTTTCCACGATGCAGGAAAGGAACATTGGAGTTAAGATGGGGAAAACGGGTAAGGTTACAACATCTTCAAAA
GCTTCATCAGCTAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTCAAGGGTGAATTTTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCGTCATTTCAAGAAGATGATACTGAATCTTCGGAGGGAAGAAACAGCACAGGAGGCCAGGATGCCACTTCTAATGGGCATATTCGTTTCCCTGCAGA
AGCAACAAAAACAAATTCATCATCAGGTCCTCCTATATTTTCTGATGCGGAATCACTTTTGTCTCTTTTCAAGGATTGTCGGAGGGAGTTGGTCGACCTTAGTCACCAGGTTGATGCAAGATTGGGCAATCTTAAGAAGGAAGTTGCTCTTCAAGACTCTAGGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTG
ATGCCCTATTTGAAAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCAGCAAAGATTGGCGATCATTTACAGAGTGCAGATTCACAGAGAGAAACTGCTAGTCAAACTATAGAACTTATAAGGCACCTTATGGAGTTCAACAGCAGTCCAGGTGATCTAATGGAACTCTCACCTCTCTTCTCTGAT
GATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTCCGCTCCTTTGCTGAAGAAGATGTGGGCAGACAGGGAATGGCTGCTGCATCTATCAGGGGCACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTAGCAAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGGCTCGTTTTGACGCTGC
TTCTCAACGACGGGAATTATCAACCATGGCAGAGTGTGCTAAGATACTGTCTCAGTTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAATGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTT
CGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTATGGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGgttatatatacagttgattttactcattgttatttccctgccttaatcaaatagccaatggaaagttattgagatactgattgccatctttcatgttca
tgtttttattagtttctggctagagagagcttttaaagtatgactttgatgttggatcactaactctagaaattgagcttgattgaatgattttcatgtatttctcttttggttttgtagCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGA
AGAAGGAGGCCTTTTGTTGGTGGGGTTTTATCCTTTCCTCATAAAATAAGCAATTTCAAGTTTTAAACTTGAAAGAACATTGCTTTATATAAGATTCCTTATTGCTCCTATGGCTCTTGAATTTTCTTTAATTGATTTACTCTGCAGTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGA
ATTGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGCACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTA
CTGCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGGATCAAGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTA
AATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACAAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCCATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATT
GTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCAGAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTC
CAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTTGAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGG
Intron 3 GTGGGGTTTT ... TACTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.76 | 39 | 5 | 19 |
| A2 | 20 | 32 | 5 | 8 |
| A3 | 10.64 | 42 | 0 | 5 |
| A4 | 20.69 | 23 | 1 | 6 |
| A5 | 9.52 | 19 | 0 | 2 |
| A6 | 3.57 | 27 | 0 | 1 |
| A7 | 21.62 | 29 | 0 | 8 |
| A8 | 24.24 | 25 | 0 | 8 |
| A9 | 6.25 | 15 | 1 | 1 |
| A10 | 14.71 | 29 | 0 | 5 |
>TRINITY_DN115462_c0_g1_i1 from sample A2 / Example spliced isoformGCAATATAATACCTTGAATATTTTATTGGTATCAGACTGTCGAAAATTCATCACAAATTCTTATTGCCTGGTCGCCTTCATTTGCGTTTCCTGTATATCAGCGCAACTCATCTCAGACGTGATGCGATAGAATTGAGCCCGTTAATCAAACAGACATCGCATATGGGAACTTTCCCAATTACATTCAACATATTTGGCAT
TGAAGATCAAATACGCTTTTAGCAATTTGTGGAATCCATTATCATTTCCACTCTTACTCTTGGTGTGTGAAGGGAAGGGAAGCTGCCCCTGCCAGGGTTCAGACGCACCAATTTCCAGCACATCTGCGGTTTCCACGATGCAGGAAAGGAACATTGGAGTTAAGATGGGGAAAACGGGTAAGGTTACAACATCTTCAAAA
GCTTCATCAGCTAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTCAAGGGTGAATTTTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCGTCATTTCAAGAAGATGATACTGAATCTTCGGAGGGAAGAAACAGCACAGGAGGCCAGGATGCCACTTCTAATGGGCATATTCGTTTCCCTGCAGA
AGCAACAAAAACAAATTCATCATCAGGTCCTCCTATATTTTCTGATGCGGAATCACTTTTGTCTCTTTTCAAGGATTGTCGGAGGGAGTTGGTCGACCTTAGTCACCAGGTTGATGCAAGATTGGGCAATCTTAAGAAGGAAGTTGCTCTTCAAGACTCTAGGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTG
ATGCCCTATTTGAAAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCAGCAAAGATTGGCGATCATTTACAGAGTGCAGATTCACAGAGAGAAACTGCTAGTCAAACTATAGAACTTATAAGGCACCTTATGGAGTTCAACAGCAGTCCAGGTGATCTAATGGAACTCTCACCTCTCTTCTCTGAT
GATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTCCGCTCCTTTGCTGAAGAAGATGTGGGCAGACAGGGAATGGCTGCTGCATCTATCAGGGGCACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTAGCAAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGGCTCGTTTTGACGCTGC
TTCTCAACGACGGGAATTATCAACCATGGCAGAGTGTGCTAAGATACTGTCTCAGTTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAATGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTT
CGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTATGGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGAAGAAGGAGGCCTTTTGTTG
TATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGAATTGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGC
ACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTACTGCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGG
ATCAAGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTAAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACAAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCC
ATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCA
GAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTCCAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTTGAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGGGAAATCGCTTGCATAAAGGTTTACTCAATCATTGGCAACGAT
TCACATTCAGTCCCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGG
TTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAGCACATGTATTTCATGAGAAGGCCATTAATGCAATAACTGTATGCAGCTGATCCTTTTCTGCAGATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGG
TCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAATTAATATTTCATATGATGATCAGAGTGATATCTATCTGAGT
>TRINITY_DN115462_c0_g1_i2 from sample A2 / Example unspliced isoform:GCAATATAATACCTTGAATATTTTATTGGTATCAGACTGTCGAAAATTCATCACAAATTCTTATTGCCTGGTCGCCTTCATTTGCGTTTCCTGTATATCAGCGCAACTCATCTCAGACGTGATGCGATAGAATTGAGCCCGTTAATCAAACAGACATCGCATATGGGAACTTTCCCAATTACATTCAACATATTTGGCAT
TGAAGATCAAATACGCTTTTAGCAATTTGTGGAATCCATTATCATTTCCACTCTTACTCTTGGTGTGTGAAGGGAAGGGAAGCTGCCCCTGCCAGGGTTCAGACGCACCAATTTCCAGCACATCTGCGGTTTCCACGATGCAGGAAAGGAACATTGGAGTTAAGATGGGGAAAACGGGTAAGGTTACAACATCTTCAAAA
GCTTCATCAGCTAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTCAAGGGTGAATTTTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCGTCATTTCAAGAAGATGATACTGAATCTTCGGAGGGAAGAAACAGCACAGGAGGCCAGGATGCCACTTCTAATGGGCATATTCGTTTCCCTGCAGA
AGCAACAAAAACAAATTCATCATCAGGTCCTCCTATATTTTCTGATGCGGAATCACTTTTGTCTCTTTTCAAGGATTGTCGGAGGGAGTTGGTCGACCTTAGTCACCAGGTTGATGCAAGATTGGGCAATCTTAAGAAGGAAGTTGCTCTTCAAGACTCTAGGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTG
ATGCCCTATTTGAAAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCAGCAAAGATTGGCGATCATTTACAGAGTGCAGATTCACAGAGAGAAACTGCTAGTCAAACTATAGAACTTATAAGGCACCTTATGGAGTTCAACAGCAGTCCAGGTGATCTAATGGAACTCTCACCTCTCTTCTCTGAT
GATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTCCGCTCCTTTGCTGAAGAAGATGTGGGCAGACAGGGAATGGCTGCTGCATCTATCAGGGGCACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTAGCAAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGGCTCGTTTTGACGCTGC
TTCTCAACGACGGGAATTATCAACCATGGCAGAGTGTGCTAAGATACTGTCTCAGTTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAATGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTT
CGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTATGGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGGTTATATATACAGTTGATTTTACTCATTGTTATTTCCCTGCCTTAATCAAATAGCCAATGGAAAGTTATTGAGATACTGATTGCCATCTTTCATGTTCA
TGTTTTTATTAGTTTCTGGCTAGAGAGAGCTTTTAAAGTATGACTTTGATGTTGGATCACTAACTCTAGAAATTGAGCTTGATTGAATGATTTTCATGTATTTCTCTTTTGGTTTTGTAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGA
AGAAGGAGGCCTTTTGTTGgtggggttttatcctttcctcataaaataagcaatttcaagttttaaacttgaaagaacattgctttatataagattccttattgctcctatggctcttgaattttctttaattgatttactctgcagTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGA
ATTGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGCACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTA
CTGCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGGATCAAGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTA
AATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACAAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCCATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATT
GTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCAGAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTC
CAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTTGAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGG
Intron 4 GTATGAATTC ... TTGTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 56 | 18 | 10 |
| A2 | 21.74 | 18 | 4 | 6 |
| A3 | 10.53 | 34 | 4 | 4 |
| A4 | 22.03 | 23 | 3 | 10 |
| A5 | 39.13 | 7 | 4 | 5 |
| A6 | 21.88 | 75 | 16 | 26 |
| A7 | 15.83 | 101 | 22 | 16 |
| A8 | 19.83 | 97 | 19 | 29 |
| A9 | 15.18 | 81 | 9 | 20 |
| A10 | 18.95 | 62 | 5 | 24 |
>TRINITY_DN103667_c0_g1_i10 from sample A5 / Example spliced isoformTTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAACGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTTCGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTAT
GGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGAAGAAGGAGGCCTTTTGTTGTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGAAT
TGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGCACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTACT
GCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGGATCAAGTAAGTACAATATCTGAATTTCTCAAATATGCATGGATTTTCTGCTGGAA
TCATTGTGTGATATTAAATTCCAAGGTAACAGGATGTGGACTTGAGTAAGTGAAGATAGACACAAAAACAGAGGGAATTAGTAATTACAGAGTGTGCCTTTGCAGGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTAAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGT
CAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACCAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCCATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGT
CATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCAGAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTCCAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTT
GAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGGGAAATCGCTTGCATAAAGGTTTACTCAATCATTGGCAACGATTCACATTCAGTCCCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTT
TGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAACACATGTATTTCATGAGAAGGCCATTAA
TGCAATAACTGTATGCAGCTGATCCTTTTCTGCAGATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGGTCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAA
TTAATATTTCATATGATGATCAGAGTGATATCTATCTGATTACAAGTACATCCTTTATTCGTCATGTTGAAACCAATATATATGAGCAAACTATTTAGCAGTCTGGTAAGGTGGAATTTGGATTGAGTTCCAACATTTAGGTTTGGATGAACA
>TRINITY_DN103667_c0_g1_i7 from sample A5 / Example unspliced isoform:CAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGgtatgaattctctt
cagagagaacatgtggctttttgccgggctataattagttttaacttgctagtgttgtatgcagGTTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAACACATGTATTTCATGAGAAGGCCATTAATGCAATAACTGTATGCAGCTGATCCTTTTCTGCAG
ATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGGTCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAATTAATATTTCATATGATGATCAGAGTGATATCTAT
CTGATTACAAGTACATCCTTTATTCGTCATGTTGAAACCAATATATATGAGCAAACTATTTAGCAGTCTGGTAAGGTGGAATTTGGATTGAGTTCCAACATTTAGGTTTGGATGAACA
Intron 5 GTCCTCCTAT ... TAGTCACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.8 | 34 | 63 | 47 |
| A2 | 55.38 | 29 | 31 | 41 |
| A3 | 47.71 | 40 | 36 | 37 |
| A4 | 73.53 | 18 | 50 | 50 |
| A5 | 60.87 | 18 | 25 | 31 |
| A6 | 82.14 | 5 | 32 | 14 |
| A7 | 65.57 | 21 | 40 | 40 |
| A8 | 79.05 | 11 | 48 | 35 |
| A9 | 77.14 | 12 | 41 | 40 |
| A10 | 59.12 | 28 | 43 | 38 |
>TRINITY_DN129244_c2_g1_i1 from sample A1 / Example spliced isoformATAATACCTTGAATATTTTATTGGTATCAGACTGTCGAAAATTCATCACAAATTCTTATTGCCTGGTCGCCTTCATTTGCGTTTCCTGTATATCAGCGCAACTCATCTCAGACGTGATGCGATAGAATTGAGCCCGTTAATCAAACAGACATCGCATATGGGAACTTTCCCAATTACATTCAACATATTTGGCATTGAAG
ATCAAATACGCTTTTAGCAATTTGTGGAATCCATTATCATTTCCACTCTTACTCTTGGTGTGTGAAGGGAAGGGAAGCTGCCCCTGCCAGGGTTCAGACGCACCAATTTCCAGCACATCTGCGGTTTCCACGATGCAGGAAAGGAACATTGGAGTTAAGATGGGGAAAACGGGTAAGGTTACAACATCTTCAAAAGCTTC
ATCAGCTAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTCAAGGGTGAATTTTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCGTCATTTCAAGAAGATGATACTGAATCTTCGGAGGGAAGAAACAGCACAGGAGGCCAGGATGCCACTTCTAATGGGCATATTCGTTTCCCTGCAGAAGCAA
CAAAAACAAATTCATCATCAGGTTGATGCAAGATTGGGCAATCTTAAGAAGGAAGTTGCTCTTCAAGACTCTAGGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTGATGCCCTATTTGAAAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCAGCAAAGATTGGCGATCATTTACAGAG
TGCAGATTCACAGAGAGAAACTGCTAGTCAAACTATAGAACTTATAAGGCACCTTATGGAGTTCAACAGCAGTCCAGGTGATCTAATGGAACTCTCACCTCTCTTCTCTGATGATAGTCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTCCGCTCCTTTGCTGAAGAAGATGTGGGAAGACAGGGAATGGCTGCTG
CATCTATCAGGGGCACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTAGCAAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGGCTCGTTTTGACGCTGCTTCTCAACGACGGGAATTATCAACCATGGCAGAGTGTGCTAAGATACTGTCTCAGTTCAATAGAGGGACAAGTGCCATGCAGCGCTAT
GTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAACGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTTCGACATTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTATGGCTGTTTTTCCTTCTCCAGATGCAGTTATGTC
GATCCTTGTCCAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGAAGAAGGAGGCCTTTTGTTGTATCTTAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGAATTGCGGTCATTAGGATGTGGTGATTTAGATGTTG
AGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGCACAACAGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTACTGCCTTTGCACACCAACAGATGTCAGTGGGTATT
GTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGGATCAAGTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTAAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTAT
TGGTTCAAGTGTCAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACAAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCCATCAGCAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGACGGTGCTCATGCTGCATGCT
GTGAAGAAATGTCATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCAGAAGGCAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTCCAACAGTTGCTTGTACTAGAGTTGTAGCATACTTG
GCCCGCATTCTTGAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGGGAAATCGCTTGCATAAAGGTTTACTCAATCATTGGCAACGATTCACATTCAGTCCCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGT
TGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAACACATGTATTTCATGA
GAAGGCCATTAATGCAATAACTGTATGCAGCTGATCCTTTTCTGCAGATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGGTCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGA
CAAACTAAATAATTAATATTTCATATGATGATCAGAGTGATATCTATCTGATTACAAGTACATCCTTTATTCGTCATGTTGAAACCAATATATATGAGCAAACTATTTAGCAGTCTGGTAAGGTGGAATTTGGATTGAGTTCCAACATTTAGGTTTGGATGAACATATTTTACTCATACAGAATTGCAGATTGCTATCTG
TACAGCTGACAAGGAATATGTTGCATGATACCTTCTACTTTTGTTAGAAATCCATTTATAAATTTTTCTATCCATATGCAAAAAGGATGACAAGTTGTACCCTTTTGTCAATGATATTTGGTTTTATCTGCATAAAAAATGGAAATAGGAAAAACCGAAATGGATTTCCTCGGTTTTCATATTAAAAAGGGTGAAGTAAT
TCTGCAACAGCATGTTTTGCAATCTTTTGAGCACTTCCCGGACAAAATCCTAGATAAAACACAACTGCAAAGGTTTCTAGGAAGTCTGAACTACATCAAGACCTTTCTACAGAGGATAAGCAACAGACATCCATTGTCTGCAACAAAGATTGAAAAAGAATCCTGTTGCTTGGTCAAATGAGATGACTTTGGCAGTCCAA
ACAATAAAGGCCAAAGTTAAAGATCTGCCAGCCCTACATCTTCCTCAGGGTATTGGTAAGTTGATAATTGAGACAGATGCTTCAAACACTACTTGGGGTGGTGTTTTGCTAGAAGAGATTGATGGCAGAGAGAATATACGTGGCTACGGTTCGGGGTCCTTCAAAGCTGCTGAGCTTAACTATCCCAGTCATCACAAAGA
GATTCTTGCTGTGAAGAAAACGGTTCAACATTTCATTTTGTTTTTAAAGCCTGTTAAGTTTGTCATTAGAACTGATTTAAAGATAATGCCAGGAATCTTTAAGAATGAAAACTTAATGGCAGAAAATAGCAGCAGAATTCTCAAGTGGTTTATCTGGCTTTCAAATTTTGATTATGAAATTGTCTACAAGCCAGGTTATT
TGAACTGTTTGGCTGATATGCTTACTCGTGAGATTTTGCAGCAAAAGGAAGCAATCAGTCTAAAGATGTTTTCTGTTGGTTCAAGTTCTTCAGTGCCGAAAGATGAGAAGGGCAAAGGCCCAACACCAGCAGAGTTTACTGAGCTTGATTATGTCAGGTTTGAGCCCCGTAATGCATTATTCATGAAGCCTTGGGATGAA
AGTTTGTCCCCCAGTGACAGAAGAGAGCTTCTGATTATGCAAACCGTCATGCGGCTGAAAAATATCTCAGCCTAACTCTAATAAAGCAGATACAGATGAATCCCTGCAAATTGCATATTATGGAACGTTGGGAACGTACTGCTTTCAGAGGATTTTCTCAAGCACAAGAAAAATTAAGAAGATGCAGAGAATTGTGGGTT
GACTGCAACGATGAAAAGGATGACCCA
>TRINITY_DN129244_c2_g1_i3 from sample A1 / Example unspliced isoform:ATAATACCTTGAATATTTTATTGGTATCAGACTGTCGAAAATTCATCACAAATTCTTATTGCCTGGTCGCCTTCATTTGCGTTTCCTGTATATCAGCGCAACTCATCTCAGACGTGATGCGATAGAATTGAGCCCGTTAATCAAACAGACATCGCATATGGGAACTTTCCCAATTACATTCAACATATTTGGCATTGAAG
ATCAAATACGCTTTTAGCAATTTGTGGAATCCATTATCATTTCCACTCTTACTCTTGGTGTGTGAAGGGAAGGGAAGCTGCCCCTGCCAGGGTTCAGACGCACCAATTTCCAGCACATCTGCGGTTTCCACGATGCAGGAAAGGAACATTGGAGTTAAGATGGGGAAAACGGGTAAGGTTACAACATCTTCAAAAGCTTC
ATCAGCTAGCTCCCTCCCACTTCTGCTAGACATTGAAGATTTCAAGGGTGAATTTTCATTTGATGACTTATTTGGGAGCTTGGTGAATGAATTACTGCCGTCATTTCAAGAAGATGATACTGAATCTTCGGAGGGAAGAAACAGCACAGGAGGCCAGGATGCCACTTCTAATGGGCATATTCGTTTCCCTGCAGAAGCAA
CAAAAACAAATTCATCATCAGgtcctcctatattttctgatgcggaatcacttttgtctcttttcaaggattgtcggagggagttggtcgaccttagtcaccagGTTGATGCAAGATTGGGCAATCTTAAGAAGGAAGTTGCTCTTCAAGACTCTAGGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTGATGCC
CTATTTGAAAGTTTTAACAGGCTAGATTCTCGCATCTCAGGTGTAGGGCAGACTGCAGCAAAGATTGGCGATCATTTACAGAGTGCAGATTCACAGAGAGAAACTGCTAGTCAAACTATAGAACTTATAAGGCACCTTATGGAGTTCAACAGCAGTCCAGGTGATCTAATGGAACTCTCACCTCTCTTCTCTGATGATAG
TCGAGTTGCTGAGGCTGCAGCAATTGCACAAAAACTCCGCTCCTTTGCTGAAGAAGATGTGGGAAGACAGGGAATGGCTGCTGCATCTATCAGGGGCACTTCAAATGCTAGCAGGGGCCTAGAAGTTGCTGTAGCAAACCTACAGGATTATTGTAATGAATTAGAGAACAGACTCTTGGCTCGTTTTGACGCTGCTTCTC
AACGACGGGAATTATCAACCATGGCAGAGTGTGCTAAGATACTGTCTCAGTTCAATAGAGGGACAAGTGCCATGCAGCGCTATGTAGCTTCACGACCGATGTTTATCGATGTTGATATTATGAACGCAGATGCAAAGATGGTTCTTGGAGACCAGGGCATACAATCAGGCCCCAGCAATGTGGCACGTGGCCTTTCGACA
TTGTACAAAGAAATCATAGAAACTGTCCGAAAGGAAGCTGCTACTATTATGGCTGTTTTTCCTTCTCCAGATGCAGTTATGTCGATCCTTGTCCAGCGTGTTTTGGAGCAGAGGGTTTCTGCAGTGTTGGATAAATTTTTGCCTAAGCCCTCACTTGCAAACCCACCACCTATGGAAGAAGGAGGCCTTTTGTTGTATCT
TAGAATTCTGGCAGTGGCATATGAGAAGACACAAGAACTAGCTAAAGAATTGCGGTCATTAGGATGTGGTGATTTAGATGTTGAGGGGCTTGCAGAATCTCTGTTTTCTACACACCAAGATGAATATCCAGAGCATGAACAGTGTTCTTTAAACCAACTATTTCAATCCAAGATGGCAGAGTTGCGTTCTGGAGCACAAC
AGCCATCTGAAGTGTCTGGTACATTGTCACGTGGTAAACCTTCCTCTACTGCCTTTGCACACCAACAGATGTCAGTGGGTATTGTGACTGAGTTTGTTCGCTGGAATGAGGAGGCAGTTAGTCGCTGCAATCTGCTTTCTCCCAATCCTGCTGCTCTCGCAAATAATGTGAAAGCAGTCTTCACATGCCTTCTGGATCAA
GTCAGCCAATATACCACAGAAGGATTGGAAAGGACTAGGGAAGCTCTAAATGATGCTGCAGCTTTAAGAGAGCGGTTTGTTATTGGTTCAAGTGTCAGTAGAAGAGTGGCTGCAGCTGCTGCTTCTGCGGCAGAGGCAGCAGCAGCAGCAGGTGAAACAAGTTTTAGGGCTTTCATGGTTGCAGTTCAACGTGCCATCAG
CAATGTTGCTATGGTTCAGCAACATTTTGGGAACACTATTTCAAGATTGTTATTACCTGTTGACGGTGCTCATGCTGCATGCTGTGAAGAAATGTCATCAGCAATGTCAAGTGCCGAGAGTGCTGCTCTAAAAGGGCTTCAACAATGTATTGACACTGTTATGGCAGAGGTGGATCGTCTTCTAGCTGCTGAGCAGAAGG
CAACTGATTATCGGTCTCCAGATGATGGAAATACCCCAGATCATCGTCCAACAGTTGCTTGTACTAGAGTTGTAGCATACTTGGCCCGCATTCTTGAAGCAGCAAATAGTGCTTTAGAAGGCCTCAACAAACAAGCGTTTATGACAGAATTGGGAAATCGCTTGCATAAAGGTTTACTCAATCATTGGCAACGATTCACA
TTCAGTCCCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTTTAT
TCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAACACATGTATTTCATGAGAAGGCCATTAATGCAATAACTGTATGCAGCTGATCCTTTTCTGCAGATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGGTCTTG
TATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAATTAATATTTCATATGATGATCAGAGTGATATCTATCTGATTACAAGTACATCCTTTATTCGTCATGTTGAAACCAATATATATGAGCAAACTATTTAGCAGTCTG
GTAAGGTGGAATTTGGATTGAGTTCCAACATTTAGGTTTGGATGAACATATTTTACTCATACAGAATTGCAGATTGCTATCTGTACAGCTGACAAGGAATATGTTGCATGATACCTTCTACTTTTGTTAGAAATCCATTTATAAATTTTTCTATCCATATGCAAAAAGGATGACAAGTTGTACCCTTTTGTCAATGATAT
TTGGTTTTATCTGCATAAAAAATGGAAATAGGAAAAACCGAAATGGATTTCCTCGGTTTTCATATTAAAAAGGGTGAAGTAATTCTGCAACAGCATGTTTTGCAATCTTTTGAGCACTTCCCGGACAAAATCCTAGATAAAACACAACTGCAAAGGTTTCTAGGAAGTCTGAACTACATCAAGACCTTTCTACAGAGGAT
AAGCAACAGACATCCATTGTCTGCAACAAAGATTGAAAAAGAATCCTGTTGCTTGGTCAAATGAGATGACTTTGGCAGTCCAAACAATAAAGGCCAAAGTTAAAGATCTGCCAGCCCTACATCTTCCTCAGGGTATTGGTAAGTTGATAATTGAGACAGATGCTTCAAACACTACTTGGGGTGGTGTTTTGCTAGAAGAG
ATTGATGGCAGAGAGAATATACGTGGCTACGGTTCGGGGTCCTTCAAAGCTGCTGAGCTTAACTATCCCAGTCATCACAAAGAGATTCTTGCTGTGAAGAAAACGGTTCAACATTTCATTTTGTTTTTAAAGCCTGTTAAGTTTGTCATTAGAACTGATTTAAAGATAATGCCAGGAATCTTTAAGAATGAAAACTTAAT
GGCAGAAAATAGCAGCAGAATTCTCAAGTGGTTTATCTGGCTTTCAAATTTTGATTATGAAATTGTCTACAAGCCAGGTTATTTGAACTGTTTGGCTGATATGCTTACTCGTGAGATTTTGCAGCAAAAGGAAGCAATCAGTCTAAAGATGTTTTCTGTTGGTTCAAGTTCTTCAGTGCCGAAAGATGAGAAGGGCAAAG
GCCCAACACCAGCAGAGTTTACTGAGCTTGATTATGTCAGGTTTGAGCCCCGTAATGCATTATTCATGAAGCCTTGGGATGAAAGTTTGTCCCCCAGTGACAGAAGAGAGCTTCTGATTATGCAAACCGTCATGCGGCTGAAAAATATCTCAGCCTAACTCTAATAAAGCAGATACAGATGAATCCCTGCAAATTGCATA
TTATGGAACGTTGGGAACGTACTGCTTTCAGAGGATTTTCTCAAGCACAAGAAAAATTAAGAAGATGCAGAGAATTGTGGGTTGACTGCAACGATGAAAAGGATGACCCA
Intron 6 GTAAGTCACA ... ATTCGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.02 | 50.3 | 1 | 0 |
| A2 | 0 | 14.7 | 0 | 0 |
| A3 | 9.4 | 25.7 | 4 | 1 |
| A4 | 0 | 17 | 0 | 0 |
| A5 | 52.73 | 6 | 8 | 5 |
| A6 | 0 | 47.3 | 0 | 0 |
| A7 | 0 | 71.7 | 0 | 0 |
| A8 | 0 | 75.7 | 0 | 0 |
| A9 | 0 | 58.7 | 0 | 0 |
| A10 | 1.25 | 43 | 1 | 0 |
>TRINITY_DN103667_c0_g1_i7 from sample A5 / Example spliced isoformCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATCCTGGCAAATGTATTTATTGTTGCTCCAGAAAGCCTTCCCACTTTGTTTGAAGGTAGCCCAAGTATTCGCAAAGATGCTTTAAGGTATGAATTCTCTT
CAGAGAGAACATGTGGCTTTTTGCCGGGCTATAATTAGTTTTAACTTGCTAGTGTTGTATGCAGGTTTATTCAACTGCGAGACGATTACAAAACTGCCAAAATAGCAAGCAGACTAAGTTCATTGATGATAGAATAACACATGTATTTCATGAGAAGGCCATTAATGCAATAACTGTATGCAGCTGATCCTTTTCTGCAG
ATTGCAAATCGCTATGCAAGAAAACATTTCATAGAGCCTCTCTACATTCATATATGCACATTTGGTCTTGTATACATTTGTGCTTCTGATTCACGCCATCCAAAAGTTGTATGCTTCTTTGAATGTATACATTGGCAGAAATATCTATTTGGACAAACTAAATAATTAATATTTCATATGATGATCAGAGTGATATCTAT
CTGATTACAAGTACATCCTTTATTCGTCATGTTGAAACCAATATATATGAGCAAACTATTTAGCAGTCTGGTAAGGTGGAATTTGGATTGAGTTCCAACATTTAGGTTTGGATGAACA
>TRINITY_DN103667_c0_g1_i1 from sample A5 / Example unspliced isoform:AATATGCGGATATGGATCTTGCTTGTGTGCACTTTTATTATTTTCATTCATTTGAAAACTCAGAAAATCGTTTTATTGTGCAGTGGGGGTTTACGATTGAAGCGTGACATTACAGAGTACACAGAGTTTGTGCGTAGATTCAATGCTCCTGCAGTTGATGAAAAGTTTGAATTACTGGGAATgtaagtcacaaaggaatt
tcatttcaatctttacttgtcatgaaaaatatattataattatctgactaaattgccatgttctatgatgagattcgtccagCCTGGCAAATGTATTTATTGTTG