sp|Q9C5X9|HAC1_ARATH ----> Histone acetyltransferase HAC1
Intron 1 GTAAGTGATG ... GTGGCGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.86 | 107 | 17 | 36 |
| A2 | 17.55 | 77.7 | 14 | 19 |
| A3 | 19.1 | 95.3 | 25 | 20 |
| A4 | 20.97 | 49 | 17 | 9 |
| A5 | 12.5 | 28 | 2 | 6 |
| A6 | 11.98 | 323.3 | 24 | 64 |
| A7 | 10.42 | 395.3 | 30 | 62 |
| A8 | 12.4 | 318 | 24 | 66 |
| A9 | 8.56 | 288.7 | 18 | 36 |
| A10 | 13.77 | 278.7 | 23 | 66 |
>TRINITY_DN42500_c0_g1_i3 from sample A7 / Example spliced isoformGGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCT
GCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCG
GCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCGGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAACGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTC
CTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAA
>TRINITY_DN42500_c0_g1_i8 from sample A7 / Example unspliced isoform:GGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATgtaagtgatgaaagtcattatagcctttacatcaataacaactaagtcctatttcaaagttcagagtgtttgaaccaagaaaatcaaattgtgcttc
aggtaaggaaattagttaaccatcaagcatttgtagtcatgcacagcaggaaatatcttgtatgctgtatgttttcccttctttattcccaaagatgtttcaggtgagagccaaaacaagtgagatgttagggggatgaatgcagcacactttccttaacttcttgatttctaggtgctaaatgcaaggagtgaggtcaa
ttattatatgataatgtttttcatgttttcggattctctaaattttctctttacagggtagttttgcaagtacattttcagttcattggtttattgtattttcattttcatttgtggcgtcagCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGG
AAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTG
Intron 2 GCAGCTGCCT ... CTTTGGAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.91 | 8 | 22 | 17 |
| A2 | 76 | 3 | 16 | 3 |
| A3 | 77.78 | 4 | 19 | 9 |
| A4 | 78.95 | 2 | 10 | 5 |
| A5 | 100 | 0 | 1 | 1 |
| A6 | 67.44 | 7 | 11 | 18 |
| A7 | 60.98 | 16 | 32 | 18 |
| A8 | 65.71 | 12 | 22 | 24 |
| A9 | 52.63 | 9 | 13 | 7 |
| A10 | 68 | 8 | 16 | 18 |
>TRINITY_DN42500_c0_g1_i8 from sample A7 / Example spliced isoformGGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTC
AGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGGAAATATCTTGTATGCTGTATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAA
TTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGCAAGTACATTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGG
AAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTG
>TRINITY_DN42500_c0_g1_i4 from sample A7 / Example unspliced isoform:GGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTC
AGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAgcagctgcctctgcaaaacccagtgattcattatgacaagtatgcttggtggaacaatgtttgtcccatgctttttcccatgcttttttattcagttttatgggctaaagcatgtatgctacactttggagagGCAGGAAATATCTTGTATGCTG
TATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGC
AAGTACATTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTT
ACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAA
TTTCTTCGGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAACGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATAC
CCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATA
TTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
Intron 3 GTAAGTGATG ... CTTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.91 | 142.5 | 49 | 27.5 |
| A2 | 30.16 | 114 | 48 | 13 |
| A3 | 31.36 | 144.8 | 64 | 17.5 |
| A4 | 35.72 | 77.5 | 41 | 15.5 |
| A5 | 18.54 | 46.8 | 10 | 7.5 |
| A6 | 35.06 | 438.5 | 210 | 89 |
| A7 | 32.27 | 481.8 | 217 | 77.5 |
| A8 | 42.75 | 436.5 | 276 | 89 |
| A9 | 36.02 | 435.3 | 225 | 77.5 |
| A10 | 31.97 | 371.8 | 167 | 54 |
>TRINITY_DN42500_c0_g1_i4 from sample A7 / Example spliced isoformGGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTC
AGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGTGATTCATTATGACAAGTATGCTTGGTGGAACAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTG
TATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGC
AAGTACATTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTT
ACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAA
TTTCTTCGGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAACGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATAC
CCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATA
TTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
>TRINITY_DN42500_c0_g1_i9 from sample A7 / Example unspliced isoform:GGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTC
AGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGTGATTCATTATGACAAGTATGCTTGGTGGAACAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTG
TATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGC
AAGTACATTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTT
ACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATgtaagtgatgaaagacattctaatag
ttacagcaataacaatcaagtttatttcaaagtttgcccttttttatgtaattttttcataaaaaccaagaaaatcaaattgtgctgcatatagggaaattagttaacatcaagcatatcatacacaacagctgctattgcaaaacccagtattatattataactttttatttaatagtatgcttggttgaacactgttt
gttcagtaaattcttgctttctatttagttttatgggctaaagcatgcgtgctacaatttggacagtcaaaaactttcttatatgctttcctttagttgttttccaaagatgtttcacataagaaccaaaaaacaaggatccaagtgttgaaccaagaaaattaaattgtacttcatgtagagaaattagttaaccatga
aacttttgaagtcatgcacaatagctgttgctgcaaatcctttcatttattatgactttgttatctaagattatacttagttgaacgatgttggtccaataatattcaattttagggattaagaacatgtattctacaatttggactgcgagaaactttcttgtgtgctttcctttctttttatccaaacatgtttcagg
tgagagccacaagaagtttggttttaggggatgaatgccccaggaagcacttcctttaaactggttgatttttaggtgatgactgcagggagtggggtccatgttatacgattaaaaatatatcttgccttcaggattctctaaattctcttaaaggataggtttaccgcaagtacatttgagtttattaaaaggattgt
tccgagtgctcgtgagaagtaggtcactggttcaagtcaaattggcagctgctcatgagttggccatagcattagttttaggcgaacctactatatactctgcttacctaaggggtgagcttattataatattctcatcagaactgggattccattaaaatgagcgcattataatattctcctcggggctgggactctac
catcataacgagaacaaaaatgagttcattaattttaatttcttttgtcagCTTGCAAGTATTTCACCGACAGCCAATTTCTTCGGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGTATAGACTACATGGAAGCCATTTTATGAATCCATTGCTTACC
TGTAATTGTTTTCAATTCTATATTTAGTGATTTTACAGCTAGACAAATGTTGTGCATGAGCCAGAGAAGGATTGTTCACTGATTTGCTACCAGCTTGGCTATAAAATGGAGAATATCCAATTTTTTTAGCTGTGAAGCAAATCTCTATCACTGGAACTAAAAGTTATTAGATTGTTGAACTTATGTTTATCATATTCTTT
TGAATTATGTTATGGAGTTCAAGATGAAGCTTTTTTCTTTTTCTTTTTTATCTATCAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAG
TGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCAC
ACTTACGTCTGATTTTGTTTGCTGT
Intron 4 GTAAGTGATG ... TGATTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.33 | 145 | 39 | 35 |
| A2 | 14.38 | 125 | 27 | 15 |
| A3 | 13.76 | 163 | 41 | 11 |
| A4 | 20.43 | 74 | 24 | 14 |
| A5 | 19.42 | 56 | 15 | 12 |
| A6 | 18.63 | 321 | 91 | 56 |
| A7 | 16.47 | 393 | 97 | 58 |
| A8 | 20.94 | 270 | 78 | 65 |
| A9 | 13.02 | 364 | 75 | 34 |
| A10 | 16.71 | 339 | 74 | 62 |
>TRINITY_DN41575_c0_g3_i4 from sample A9 / Example spliced isoformTAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGCGTTTTATCTTTCTTGGAAATACAGAACGCGAAGGAAAGGCGCTGCAGCATTTTCTGTGGCTGAA
ACAGGTCACAGCTCAGAAATTTCAGATTAGAGCTCTGAGCAGCACGCAGAGGGTGTTTGTGTCTATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCATATACCATAGAGAGGATCTTGCAATTATTTCATCAGCACCCAGTTTCTGACGAATGGCAACA
GCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATTGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATT
TATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCTGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTA
ACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGCG
GCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAG
TGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAATATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAACCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCAC
ACTTACGTCTGATTTTGTTTGCTGTAATCATATTTATGTTTCTTTATCCACG
>TRINITY_DN41575_c0_g3_i1 from sample A9 / Example unspliced isoform:TAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGCGTTTTATCTTTCTTGGAAATACAGAACGCGAAGGAAAGGCGCTGCAGCATTTTCTGTGGCTGAA
ACAGGTCACAGCTCAGAAATTTCAGATTAGAGCTCTGAGCAGCACGCAGAGGGTGTTTGTGTCTATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCATATACCATAGAGAGGATCTTGCAATTATTTCATCAGCACCCAGTTTCTGACGAATGGCAACA
GCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATTGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATT
TATATGCAGTGCGGAAATATATGATCGAGAGGATgtaagtgatgaaagtcattatagcctttacatcaataacaactaagtcctatttcaaagttcagagtgtttgaaccaagaaaatcaaattgtgcttcaggtaaggaaattagttaaccatcaagcatttgtagtcatgcacagcagctgcctctgcaaaacccagt
gattcattatgacaagtatgcttggtggaacaatgtttgtcccatgctttttcccatgcttttttattcagttttatgggctaaagcatgtatgctacactttggagaggcaggaaatatcttgtatgctgtatgttttcccttctttattcccaaagatgtttcaggtgagagccaaaacaagtgagatgttaggggga
tgaatgcagcacactttccttaacttcttgatttctagCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCTGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAG
GTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAAC
AGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAAT
CAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAATATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAACCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATT
GCACACTTACGTCTGATTTTGTTTGCTGTAATCATATTTATGTTTCTTTATCCACG
Intron 5 GTGCTAAATG ... GTGGCGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.09 | 35 | 17 | 36 |
| A2 | 57.14 | 15 | 19 | 21 |
| A3 | 54.17 | 11 | 6 | 20 |
| A4 | 49.09 | 14 | 18 | 9 |
| A5 | 45.45 | 12 | 14 | 6 |
| A6 | 42.56 | 56 | 20 | 63 |
| A7 | 44.5 | 58 | 33 | 60 |
| A8 | 41.18 | 65 | 21 | 70 |
| A9 | 41.38 | 34 | 12 | 36 |
| A10 | 42.33 | 62 | 24 | 67 |
>TRINITY_DN41575_c0_g3_i1 from sample A9 / Example spliced isoformTAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGCGTTTTATCTTTCTTGGAAATACAGAACGCGAAGGAAAGGCGCTGCAGCATTTTCTGTGGCTGAA
ACAGGTCACAGCTCAGAAATTTCAGATTAGAGCTCTGAGCAGCACGCAGAGGGTGTTTGTGTCTATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCATATACCATAGAGAGGATCTTGCAATTATTTCATCAGCACCCAGTTTCTGACGAATGGCAACA
GCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATTGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATT
TATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTCAGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGT
GATTCATTATGACAAGTATGCTTGGTGGAACAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTGTATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGA
TGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCTGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAG
GTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAAC
AGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAAT
CAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAATATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAACCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATT
GCACACTTACGTCTGATTTTGTTTGCTGTAATCATATTTATGTTTCTTTATCCACG
>TRINITY_DN41575_c0_g3_i3 from sample A9 / Example unspliced isoform:TAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGCGTTTTATCTTTCTTGGAAATACAGAACGCGAAGGAAAGGCGCTGCAGCATTTTCTGTGGCTGAA
ACAGGTCACAGCTCAGAAATTTCAGATTAGAGCTCTGAGCAGCACGCAGAGGGTGTTTGTGTCTATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCATATACCATAGAGAGGATCTTGCAATTATTTCATCAGCACCCAGTTTCTGACGAATGGCAACA
GCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATTGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATT
TATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTCAGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGT
GATTCATTATGACAAGTATGCTTGGTGGAACAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTGTATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGA
TGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGgtgctaaatgcaaggagtgaggtcaattattatatgataatgtttttcatgttttcggattctctaaattttctctttacagggtagttttgcaagtacattttcagttcattggtttattgtattttcattttcatttgtggcgtcagCTTGCAATTATTT
CATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCTGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGG
TGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGG
CTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAATATT
TGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAACCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGTAATCATATTTATGTTTCTTTAT
CCACG
Intron 6 GTAGGTGGCT ... ATATGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.96 | 127 | 34 | 21.5 |
| A2 | 20.42 | 165 | 46 | 38.5 |
| A3 | 18.66 | 93.8 | 24 | 19 |
| A4 | 21.58 | 110 | 28.5 | 32 |
| A5 | 14.38 | 50.8 | 10 | 7 |
| A6 | 16.23 | 623.3 | 64 | 177.5 |
| A7 | 15.36 | 654.8 | 77 | 160.5 |
| A8 | 16.25 | 550.3 | 84 | 129.5 |
| A9 | 14.74 | 581.8 | 61.5 | 139.5 |
| A10 | 15.81 | 471.5 | 49.5 | 127.5 |
>TRINITY_DN120394_c2_g1_i6 from sample A3 / Example spliced isoformAGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGCGTTTTATCTTTCTTGGAAATACAGAACGCGAAGGAAAGGCGCTGCAGCATTTTCTGTGGCTGA
AACAGGTCACAGCTCAGAAATTTCAGATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCATATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAAC
AGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGAT
TTATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGAAGGTT
AACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGC
GGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATAC
>TRINITY_DN120394_c2_g1_i5 from sample A3 / Example unspliced isoform:AGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGCGTTTTATCTTCTTAGAAATACAGAACGCAAAGGAAAGGCACTGCAGCATTTTCTGTGGTTGAA
ACAGGTCACAGCTCAGAAATTTCAATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCATATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAG
CGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTT
ATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGgtaggtggctttt
gattcttactaaagcttaatatattcatggttaaatagatttatgctaatttagtatggaggtgaaaaataagatggatttatgttaaaataggtatggagggtgaagaatatgttgtaagctaaactggcattgatccactaaacacgagttgtaaaacttgtttctcagagatactagagtgtatctactacaccaac
aaacctgaccaaaagattcgtttcttgttccattgccctacccatttccatcttgaccttacattagtacatctctaatcaattttatgtgtataatatgcacagATGCGAAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGG
AGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATACATGAACTTGAGCACTT
TGGAGCGGCGTTTGACCACTTTGATGAAACGGTTTCAACATAATCGTAACCAGAGTCTTAGTCATCACAATCCTCATGTTGGAACAATGATACCAACTCCAGGATTGCAACAAAGTGGAAATGTAAGTGCAATGATTCCTACTCCAGGTACTGATATTTCTACCGTTAATGGTCCTGGCACAAGCACTGCGGTCCCCAAC
ACAGTTGGTATGGGAAACATGCTGCCAAATACTAATGAAAATGTTAGTTTATTACAAGGTAACTCAGTACTGGCAGCAGATAATAACTCAAGCAAAATGATGCCTACCCCTGGCCTCAGCAACAATGCTTTCCCTATTTCTGGTGACAATATGTCTTCCCTCCCGGGACCTTTAAATAATGCATTCCAGTCCCAGCAAAG
TATTTCCACAGGTACAGGCAGCATGATGCCTACAATGGGTTTGGCAAGAGTTGGAAGCCAGATGATTCCAACACCTGGACTAAATACTCCACATTCTATGCCCATGAGTTCTACAGGCTCTGGTGGATTGAGTCACTCTAATGTTGATGCTGTGACAGCTGCTCAACAGCACCAGTTGCAACATCAGAAACAGCAACAAC
AGAAACAGCTGCAACAACTGCATCAGCAACAGATGCAATTTACTGGAGGGCAAAACAGCCGCATTTATCATAACATGAATGGTCAGATGGGTGGTACAATGGGCATCAACATGCCACAGAAAAATTCTTCTTATGGGCTATTGAATGGAGGCATGAATAACGGGATGCAGCTTTTGAGTGGCAATCAACATTTTGTGAAT
GGAACTACCCCACATCCTAACACAGGAAGCTACCTGACTCCTTCCCGATTTAGCAATCTACAAATGCCTTCTCAACAGCATGTTCAAAGGCAACGGCATTTAGTGCAACCAGCATTGTCTCATCAAATGAGTGATGGATATGCAATGAATGCGGCTGATCTTGCTGGGGCGGGAAACTTATATAATCCTGTAACATCCGG
Intron 7 GTATAGACTA ... TATCTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.39 | 111 | 7 | 44 |
| A2 | 18.28 | 76 | 4 | 17 |
| A3 | 23.14 | 93 | 5 | 28 |
| A4 | 25.42 | 44 | 5 | 15 |
| A5 | 24.49 | 37 | 4 | 12 |
| A6 | 21.71 | 577 | 11 | 160 |
| A7 | 25.92 | 526 | 13 | 184 |
| A8 | 24.65 | 599 | 27 | 196 |
| A9 | 24.73 | 566 | 19 | 186 |
| A10 | 22.79 | 288 | 12 | 85 |
>TRINITY_DN42500_c0_g1_i4 from sample A7 / Example spliced isoformGGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTC
AGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGTGATTCATTATGACAAGTATGCTTGGTGGAACAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTG
TATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGC
AAGTACATTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTT
ACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAA
TTTCTTCGGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAACGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATAC
CCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATA
TTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
>TRINITY_DN42500_c0_g1_i9 from sample A7 / Example unspliced isoform:GGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTC
AGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGTGATTCATTATGACAAGTATGCTTGGTGGAACAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTG
TATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGC
AAGTACATTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTT
ACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATGTAAGTGATGAAAGACATTCTAATAG
TTACAGCAATAACAATCAAGTTTATTTCAAAGTTTGCCCTTTTTTATGTAATTTTTTCATAAAAACCAAGAAAATCAAATTGTGCTGCATATAGGGAAATTAGTTAACATCAAGCATATCATACACAACAGCTGCTATTGCAAAACCCAGTATTATATTATAACTTTTTATTTAATAGTATGCTTGGTTGAACACTGTTT
GTTCAGTAAATTCTTGCTTTCTATTTAGTTTTATGGGCTAAAGCATGCGTGCTACAATTTGGACAGTCAAAAACTTTCTTATATGCTTTCCTTTAGTTGTTTTCCAAAGATGTTTCACATAAGAACCAAAAAACAAGGATCCAAGTGTTGAACCAAGAAAATTAAATTGTACTTCATGTAGAGAAATTAGTTAACCATGA
AACTTTTGAAGTCATGCACAATAGCTGTTGCTGCAAATCCTTTCATTTATTATGACTTTGTTATCTAAGATTATACTTAGTTGAACGATGTTGGTCCAATAATATTCAATTTTAGGGATTAAGAACATGTATTCTACAATTTGGACTGCGAGAAACTTTCTTGTGTGCTTTCCTTTCTTTTTATCCAAACATGTTTCAGG
TGAGAGCCACAAGAAGTTTGGTTTTAGGGGATGAATGCCCCAGGAAGCACTTCCTTTAAACTGGTTGATTTTTAGGTGATGACTGCAGGGAGTGGGGTCCATGTTATACGATTAAAAATATATCTTGCCTTCAGGATTCTCTAAATTCTCTTAAAGGATAGGTTTACCGCAAGTACATTTGAGTTTATTAAAAGGATTGT
TCCGAGTGCTCGTGAGAAGTAGGTCACTGGTTCAAGTCAAATTGGCAGCTGCTCATGAGTTGGCCATAGCATTAGTTTTAGGCGAACCTACTATATACTCTGCTTACCTAAGGGGTGAGCTTATTATAATATTCTCATCAGAACTGGGATTCCATTAAAATGAGCGCATTATAATATTCTCCTCGGGGCTGGGACTCTAC
CATCATAACGAGAACAAAAATGAGTTCATTAATTTTAATTTCTTTTGTCAGCTTGCAAGTATTTCACCGACAGCCAATTTCTTCGGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGgtatagactacatggaagccattttatgaatccattgcttacc
tgtaattgttttcaattctatatttagtgattttacagctagacaaatgttgtgcatgagccagagaaggattgttcactgatttgctaccagcttggctataaaatggagaatatccaatttttttagctgtgaagcaaatctctatcactggaactaaaagttattagattgttgaacttatgtttatcatattcttt
tgaattatgttatggagttcaagatgaagcttttttctttttcttttttatctatcagGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAG
TGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCAC
ACTTACGTCTGATTTTGTTTGCTGT
Intron 8 GTAAGTGATG ... GATGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.64 | 17 | 39 | 18 |
| A2 | 65.85 | 14 | 27 | 12 |
| A3 | 66.13 | 21 | 41 | 9 |
| A4 | 64.1 | 14 | 25 | 13 |
| A5 | 53.33 | 14 | 16 | 12 |
| A6 | 58.71 | 64 | 91 | 23 |
| A7 | 58.79 | 68 | 97 | 25 |
| A8 | 62.31 | 49 | 81 | 27 |
| A9 | 61.79 | 47 | 76 | 10 |
| A10 | 59.2 | 51 | 74 | 17 |
>TRINITY_DN119071_c0_g1_i8 from sample A1 / Example spliced isoformGGGTAAAGAGAGAATGGAATGGAGGGGAAGAAAAGCCTTGGGCCACTGTTCCCGTTTATCATTCGTGTGGGTTGGGAACGGGCGAGACATTGTGCATCTTGTCGTTGAAAGTACGAGGAGAGTTAATACTCCCACTTATCCTTACCGCTTTGATATTGCAAGGGAAGAGGGGGGTTCAGAAACCTTCTTCCATCCTTCAA
GTTTACATAGAAGAGTCTAACCATGGGGCTTTCCATAGGGTGGGTTCTGATTATGCTCTAAATTTGTTGGTCAAACAGTTTTCTTCAAGTTTTTGGATGGAGAACCTTTTTCTTCGAGTCTTTGGATGGAGGGTTCTCCTTCATCCATTGCCGCTCCTTTGTTTGCTATAATATTAGCCTCTTGGTGGTTGGTTAAAGAG
TTTTCTTCAAGTCTTTGGATGGAGAGTTCTGCTTCATCCATTGCCGCTTCTTTGTTTGATAATATTAGCCTCTAGGTTGTTTTTTTGGAGGACATGGAAGAAGTGGCTCTTATGAACATCTTCAGCAGAATTTTTGTCTATTGAATGGTTCTGTTGATGATAGGGGAAGAGATACATCTGGCTTTATAAGAGCATTGGTG
ATGTGGGAGGAGTTCCCTACCACTCTGATCTCCTCACTGGTTCTAGAGGATAGGAAGTGGAGGCTTTGAAAAGCTGCCAATACTTTCGCTTCACTGTTTGTTGCCGTGCCTAACCTCACGCATATGACTACTTGATGCCTGCCACTCTTAATCATGGCAAGTATGCTTGGTTGAACAATTTTTATTCAGTAAATGACTAC
TTTTTATTCAGTTCTAAAGACTAAAACATGTGTTCTACAATTTGGACAGTCAGGAACTTTCTTAGATACTTTTCCTTTCTATTTTCCAAAGATGTTTCAGGTGAGAGCCAAAACAAATTTGGTTTTAGGGGACGAATGCTCTACACAACACTTCCCTTAACTGCTTGATTTCTAGGTGTGATAAAAGCAGGGAGTGGGGT
CCATTATGATATGACAAAGCTCTCCATGTCTTTGGATTCTCTAAAATTTCCCTTAAAAGAGTAGTTTCTGAAGTACATTTTGGGTTATTGGTTTAATTTTTTTTTTGATTTGTCTTGTCAGCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAA
GGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGAT
GTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGCAAGTACATTTTCAGTTCATTGGTTTATTGTATTTTC
ATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTG
>TRINITY_DN119071_c0_g1_i5 from sample A1 / Example unspliced isoform:CTACTCAACCTAGGACCTTTAAAGGAACAACTTGAAGCTAGTTTAAATATAATTCAATTGTGAAGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGC
GTTTTATCTTCTTAGAAATACAGAACGCAAAGGAAAGGCACTGCAGCATTTTCTGTGGTTGAAACAGGTCACAGCTCAGAAATTTCAATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCA
TATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAG
TGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATgtaagtgatgaaagtcattatagcctttacatcaataacaactaagtcctatttcaaagttcagagtgtttgaaccaagaaaatcaaattgtgcttcaggtaag
gaaattagttaaccatcaagcatttgtagtcatgcacagcagctgcctctgcaaaacccagtgattcattatgacaagtatgcttggtggaacaatgtttgtcccatgctttttcccatgcttttttattcagttttatgggctaaagcatgtatgctacactttggagaggcaggaaatatcttgtatgctgtatgttt
tcccttctttattcccaaagatgtttcagGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGCAAGTACA
TTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCT
TTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTC
AGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCT
TGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAA
TACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
Intron 9 GTATGTTTTC ... GTGGCGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.25 | 28 | 13 | 36 |
| A2 | 67.86 | 9 | 5 | 19 |
| A3 | 55.56 | 16 | 3 | 20 |
| A4 | 56.25 | 7 | 10 | 9 |
| A5 | 60 | 4 | 5 | 6 |
| A6 | 52.46 | 58 | 10 | 64 |
| A7 | 54.39 | 52 | 19 | 62 |
| A8 | 48.18 | 71 | 13 | 66 |
| A9 | 53.73 | 31 | 8 | 36 |
| A10 | 51.16 | 63 | 11 | 66 |
>TRINITY_DN42500_c0_g1_i2 from sample A7 / Example spliced isoformGGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGTGATTCATTATGACAAGTATGCTTGGTGGAA
CAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCT
TCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCA
ATATATCATACAGAGGATGTAAGTGATGAAAGACATTCTAATAGTTACAGCAATAACAATCAAGTTTATTTCAAAGTTTGCCCTTTTTTATGTAATTTTTTCATAAAAACCAAGAAAATCAAATTGTGCTGCATATAGGGAAATTAGTTAACATCAAGCATATCATACACAACAGCTGCTATTGCAAAACCCAGTATTAT
ATTATAACTTTTTATTTAATAGTATGCTTGGTTGAACACTGTTTGTTCAGTAAATTCTTGCTTTCTATTTAGTTTTATGGGCTAAAGCATGCGTGCTACAATTTGGACAGTCAAAAACTTTCTTATATGCTTTCCTTTAGTTGTTTTCCAAAGATGTTTCACATAAGAACCAAAAAACAAGGATCCAAGTGTTGAACCAA
GAAAATTAAATTGTACTTCATGTAGAGAAATTAGTTAACCATGAAACTTTTGAAGTCATGCACAATAGCTGTTGCTGCAAATCCTTTCATTTATTATGACTTTGTTATCTAAGATTATACTTAGTTGAACGATGTTGGTCCAATAATATTCAATTTTAGGGATTAAGAACATGTATTCTACAATTTGGACTGCGAGAAAC
TTTCTTGTGTGCTTTCCTTTCTTTTTATCCAAACATGTTTCAGGTGAGAGCCACAAGAAGTTTGGTTTTAGGGGATGAATGCCCCAGGAAGCACTTCCTTTAAACTGGTTGATTTTTAGGTGATGACTGCAGGGAGTGGGGTCCATGTTATACGATTAAAAATATATCTTGCCTTCAGGATTCTCTAAATTCTCTTAAAG
GATAGGTTTACCGCAAGTACATTTGAGTTTATTAAAAGGATTGTTCCGAGTGCTCGTGAGAAGTAGGTCACTGGTTCAAGTCAAATTGGCAGCTGCTCATGAGTTGGCCATATAATTATTCCTAGGTGAACCGGGTTTGAGTCAAATTGGCAGCTGCTCATCAGTTGGCCATAGCATTAGTTTTAGGCGAACCTACTATA
TACTCTGCTTACCTAAGGGGTGAGCTTATTATAATATTCTCATCAGAACTGGGATTCCATTAAAATGAGCGCATTATAATATTCTCCTCGGGGCTGGGACTCTACCATCATAACGAGAACAAAAATGAGTTCATTAATTTTAATTTCTTTTGTCAGCTTGCAAGTATTTCACCGACAGCCAATTTCTTCGGATTGGCAAC
AGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGTATAGACTACATGGAAGCCATTTTATGAATCCATTGCTTACCTGTAATTGTTTTCAATTCTATATTTAGTGATTTTACAGCTAGACAAATGTTGTGCATGAGCCAGAGAAGGATTGTTCACTGATTTGCTACCAGCT
TGGCTATAAAATGGAGAATATCCAATTTTTTTAGCTGTGAAGCAAATCTCTATCACTGGAACTAAAAGTTATTAGATTGTTGAACTTATGTTTATCATATTCTTTTGAATTATGTTATGGAGTTCAAGATGAAGCTTTTTTCTTTTTCTTTTTTATCTATCAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCA
TGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTA
TAGGAATATGTTGACTGCTGTGTAGTGAAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
>TRINITY_DN42500_c0_g1_i8 from sample A7 / Example unspliced isoform:GGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGTGATGAAAGTCATTATAGCCTTTACATCAATAACAACTAAGTCCTATTTCAAAGTTCAGAGTGTTTGAACCAAGAAAATCAAATTGTGCTTC
AGGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGGAAATATCTTGTATGCTgtatgttttcccttctttattcccaaagatgtttcaggtgagagccaaaacaagtgagatgttagggggatgaatgcagcacactttccttaacttcttgatttctaggtgctaaatgcaaggagtgaggtcaa
ttattatatgataatgtttttcatgttttcggattctctaaattttctctttacagggtagttttgcaagtacattttcagttcattggtttattgtattttcattttcatttgtggcgtcagCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGG
AAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTG
Intron 10 GTAAGTGATG ... TGTGCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.18 | 12 | 17 | 26 |
| A2 | 60 | 10 | 14 | 16 |
| A3 | 61.64 | 14 | 25 | 20 |
| A4 | 55.56 | 10 | 17 | 8 |
| A5 | 100 | 0 | 2 | 4 |
| A6 | 46.48 | 19 | 24 | 9 |
| A7 | 50.48 | 26 | 30 | 23 |
| A8 | 64.86 | 13 | 24 | 24 |
| A9 | 46.03 | 17 | 18 | 11 |
| A10 | 48.24 | 22 | 23 | 18 |
>TRINITY_DN42500_c0_g1_i2 from sample A7 / Example spliced isoformGGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGTGATTCATTATGACAAGTATGCTTGGTGGAA
CAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCT
TCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCA
ATATATCATACAGAGGATGTAAGTGATGAAAGACATTCTAATAGTTACAGCAATAACAATCAAGTTTATTTCAAAGTTTGCCCTTTTTTATGTAATTTTTTCATAAAAACCAAGAAAATCAAATTGTGCTGCATATAGGGAAATTAGTTAACATCAAGCATATCATACACAACAGCTGCTATTGCAAAACCCAGTATTAT
ATTATAACTTTTTATTTAATAGTATGCTTGGTTGAACACTGTTTGTTCAGTAAATTCTTGCTTTCTATTTAGTTTTATGGGCTAAAGCATGCGTGCTACAATTTGGACAGTCAAAAACTTTCTTATATGCTTTCCTTTAGTTGTTTTCCAAAGATGTTTCACATAAGAACCAAAAAACAAGGATCCAAGTGTTGAACCAA
GAAAATTAAATTGTACTTCATGTAGAGAAATTAGTTAACCATGAAACTTTTGAAGTCATGCACAATAGCTGTTGCTGCAAATCCTTTCATTTATTATGACTTTGTTATCTAAGATTATACTTAGTTGAACGATGTTGGTCCAATAATATTCAATTTTAGGGATTAAGAACATGTATTCTACAATTTGGACTGCGAGAAAC
TTTCTTGTGTGCTTTCCTTTCTTTTTATCCAAACATGTTTCAGGTGAGAGCCACAAGAAGTTTGGTTTTAGGGGATGAATGCCCCAGGAAGCACTTCCTTTAAACTGGTTGATTTTTAGGTGATGACTGCAGGGAGTGGGGTCCATGTTATACGATTAAAAATATATCTTGCCTTCAGGATTCTCTAAATTCTCTTAAAG
GATAGGTTTACCGCAAGTACATTTGAGTTTATTAAAAGGATTGTTCCGAGTGCTCGTGAGAAGTAGGTCACTGGTTCAAGTCAAATTGGCAGCTGCTCATGAGTTGGCCATATAATTATTCCTAGGTGAACCGGGTTTGAGTCAAATTGGCAGCTGCTCATCAGTTGGCCATAGCATTAGTTTTAGGCGAACCTACTATA
TACTCTGCTTACCTAAGGGGTGAGCTTATTATAATATTCTCATCAGAACTGGGATTCCATTAAAATGAGCGCATTATAATATTCTCCTCGGGGCTGGGACTCTACCATCATAACGAGAACAAAAATGAGTTCATTAATTTTAATTTCTTTTGTCAGCTTGCAAGTATTTCACCGACAGCCAATTTCTTCGGATTGGCAAC
AGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGTATAGACTACATGGAAGCCATTTTATGAATCCATTGCTTACCTGTAATTGTTTTCAATTCTATATTTAGTGATTTTACAGCTAGACAAATGTTGTGCATGAGCCAGAGAAGGATTGTTCACTGATTTGCTACCAGCT
TGGCTATAAAATGGAGAATATCCAATTTTTTTAGCTGTGAAGCAAATCTCTATCACTGGAACTAAAAGTTATTAGATTGTTGAACTTATGTTTATCATATTCTTTTGAATTATGTTATGGAGTTCAAGATGAAGCTTTTTTCTTTTTCTTTTTTATCTATCAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCA
TGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTA
TAGGAATATGTTGACTGCTGTGTAGTGAAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
>TRINITY_DN42500_c0_g1_i4 from sample A7 / Example unspliced isoform:GGAGCAGTGAATCTTCCCTAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATgtaagtgatgaaagtcattatagcctttacatcaataacaactaagtcctatttcaaagttcagagtgtttgaaccaagaaaatcaaattgtgcttc
agGTAAGGAAATTAGTTAACCATCAAGCATTTGTAGTCATGCACAGCAGCTGCCTCTGCAAAACCCAGTGATTCATTATGACAAGTATGCTTGGTGGAACAATGTTTGTCCCATGCTTTTTCCCATGCTTTTTTATTCAGTTTTATGGGCTAAAGCATGTATGCTACACTTTGGAGAGGCAGGAAATATCTTGTATGCTG
TATGTTTTCCCTTCTTTATTCCCAAAGATGTTTCAGGTGAGAGCCAAAACAAGTGAGATGTTAGGGGGATGAATGCAGCACACTTTCCTTAACTTCTTGATTTCTAGGTGCTAAATGCAAGGAGTGAGGTCAATTATTATATGATAATGTTTTTCATGTTTTCGGATTCTCTAAATTTTCTCTTTACAGGGTAGTTTTGC
AAGTACATTTTCAGTTCATTGGTTTATTGTATTTTCATTTTCATTTGTGGCGTCAGCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTT
ACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATATATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAA
TTTCTTCGGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAACGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATAC
CCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATA
TTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
Intron 11 GTAAGTGATG ... CTTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.01 | 147.8 | 49 | 21.8 |
| A2 | 28.72 | 120.4 | 48 | 7.5 |
| A3 | 28.98 | 159.3 | 64 | 12.1 |
| A4 | 34.83 | 78.2 | 41 | 13.6 |
| A5 | 16.16 | 53.5 | 10 | 4.2 |
| A6 | 37.88 | 360.1 | 208.1 | 57.8 |
| A7 | 34.32 | 425.5 | 217 | 48.8 |
| A8 | 47.74 | 327.9 | 276 | 60.5 |
| A9 | 37.44 | 388.8 | 225 | 47.7 |
| A10 | 32.81 | 348.1 | 167 | 39 |
>TRINITY_DN119071_c0_g1_i4 from sample A1 / Example spliced isoformCTACTCAACCTAGGACCTTTAAAGGAACAACTTGAAGCTAGTTTAAATATAATTCAATTGTGAAGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGC
GTTTTATCTTCTTAGAAATACAGAACGCAAAGGAAAGGCACTGCAGCATTTTCTGTGGTTGAAACAGGTCACAGCTCAGAAATTTCAATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCA
TATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAG
TGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCAC
AGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATAT
ATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTA
GAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAATCATTAGAATCTA
TGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
>TRINITY_DN119071_c0_g1_i3 from sample A1 / Example unspliced isoform:CTACTCAACCTAGGACCTTTAAAGGAACAACTTGAAGCTAGTTTAAATATAATTCAATTGTGAAGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGC
GTTTTATCTTCTTAGAAATACAGAACGCAAAGGAAAGGCACTGCAGCATTTTCTGTGGTTGAAACAGGTCACAGCTCAGAAATTTCAATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCA
TATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAG
TGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCAC
AGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATAT
ATCATACAGAGGATgtaagtgatgaaagacattctaatagttacagcaataacaatcaagtttatttcaaagtttgcccttttttatgtaattttttcataaaaaccaagaaaatcaaattgtgctgcatgtagggaaattagttaacatcaagcatatcatacacaacagctgctattgcaaaacccagtattatatta
taactttttatttaatagtatgcttggttgaacactgtttgttcagtaaattcttgctttctatttagttttatgggctaaagcatgcgttctacaatttggacagtcaaaaactttcttatatgctttcctttagttgttttccaaagatgtttcacataagaaccaaaaaacaaggatccaagtgttgaaccaagaaa
attaaattgtacttcatgtagagaaattagttaaccatgaaacttttgaagtcatgcacaatagctgttgctgcaaatcctttcatttattatgactttgttatctaagattatacttagttgaacgatgttggtccaataatattcaattttagggattaagaacatgtattctacaatttggactgcgagaaactttc
ttgtgtgctttcctttctttttatccaaacatgtttcaggtgagagccacaagaagtttggttttaggggatgaatgccccaggaagcacttcctttaaactggttgatttttaggtgatgactgcagggagtggggtccatgttatacgattaaaaatatatcttgccttcaggattctctaaattctcttaaaggata
ggtttaccgcaagtacatttgagtttattaaaaggattgttccgagtgctcgtgagaagtaggtcactggttcaagtcaaattggcagctgctcatgagttggccatataattattcctaggtgaaccgggtttgagtcaaattggcagctgctcatcagttggccatagcattatttttaggcgaacctactatataat
ctgcttacctaaggggtgagcttattataatattctcatcagagctgggattccattaaaatgagcgcgttataatattctcctcggggctgggactctaccatcataacgagaacaaaaatgagctcattaattttaatttcttttgtcagCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGCG
GCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAACGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAG
TGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCACA
CTTACGTCTGATTTTGTTTGCTGT
Intron 12 GTGAGAGCCA ... GTGGCGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.48 | 145.3 | 17 | 36 |
| A2 | 13.63 | 116.3 | 14 | 22 |
| A3 | 12.46 | 150.7 | 21 | 20 |
| A4 | 12.73 | 79.3 | 14 | 9 |
| A5 | 16.6 | 52 | 14 | 6 |
| A6 | 15.46 | 350.3 | 64 | 64 |
| A7 | 13.27 | 429 | 68 | 63 |
| A8 | 16.08 | 308.3 | 49 | 68 |
| A9 | 10.28 | 368.3 | 47 | 37 |
| A10 | 15.12 | 338.3 | 51 | 69 |
>TRINITY_DN119071_c0_g1_i3 from sample A1 / Example spliced isoformCTACTCAACCTAGGACCTTTAAAGGAACAACTTGAAGCTAGTTTAAATATAATTCAATTGTGAAGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGC
GTTTTATCTTCTTAGAAATACAGAACGCAAAGGAAAGGCACTGCAGCATTTTCTGTGGTTGAAACAGGTCACAGCTCAGAAATTTCAATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCA
TATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAG
TGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCAC
AGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATAT
ATCATACAGAGGATGTAAGTGATGAAAGACATTCTAATAGTTACAGCAATAACAATCAAGTTTATTTCAAAGTTTGCCCTTTTTTATGTAATTTTTTCATAAAAACCAAGAAAATCAAATTGTGCTGCATGTAGGGAAATTAGTTAACATCAAGCATATCATACACAACAGCTGCTATTGCAAAACCCAGTATTATATTA
TAACTTTTTATTTAATAGTATGCTTGGTTGAACACTGTTTGTTCAGTAAATTCTTGCTTTCTATTTAGTTTTATGGGCTAAAGCATGCGTTCTACAATTTGGACAGTCAAAAACTTTCTTATATGCTTTCCTTTAGTTGTTTTCCAAAGATGTTTCACATAAGAACCAAAAAACAAGGATCCAAGTGTTGAACCAAGAAA
ATTAAATTGTACTTCATGTAGAGAAATTAGTTAACCATGAAACTTTTGAAGTCATGCACAATAGCTGTTGCTGCAAATCCTTTCATTTATTATGACTTTGTTATCTAAGATTATACTTAGTTGAACGATGTTGGTCCAATAATATTCAATTTTAGGGATTAAGAACATGTATTCTACAATTTGGACTGCGAGAAACTTTC
TTGTGTGCTTTCCTTTCTTTTTATCCAAACATGTTTCAGGTGAGAGCCACAAGAAGTTTGGTTTTAGGGGATGAATGCCCCAGGAAGCACTTCCTTTAAACTGGTTGATTTTTAGGTGATGACTGCAGGGAGTGGGGTCCATGTTATACGATTAAAAATATATCTTGCCTTCAGGATTCTCTAAATTCTCTTAAAGGATA
GGTTTACCGCAAGTACATTTGAGTTTATTAAAAGGATTGTTCCGAGTGCTCGTGAGAAGTAGGTCACTGGTTCAAGTCAAATTGGCAGCTGCTCATGAGTTGGCCATATAATTATTCCTAGGTGAACCGGGTTTGAGTCAAATTGGCAGCTGCTCATCAGTTGGCCATAGCATTATTTTTAGGCGAACCTACTATATAAT
CTGCTTACCTAAGGGGTGAGCTTATTATAATATTCTCATCAGAGCTGGGATTCCATTAAAATGAGCGCGTTATAATATTCTCCTCGGGGCTGGGACTCTACCATCATAACGAGAACAAAAATGAGCTCATTAATTTTAATTTCTTTTGTCAGCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGCG
GCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAACGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTAGAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAG
TGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAATCATTAGAATCTATGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCACA
CTTACGTCTGATTTTGTTTGCTGT
>TRINITY_DN119071_c0_g1_i8 from sample A1 / Example unspliced isoform:GGGTAAAGAGAGAATGGAATGGAGGGGAAGAAAAGCCTTGGGCCACTGTTCCCGTTTATCATTCGTGTGGGTTGGGAACGGGCGAGACATTGTGCATCTTGTCGTTGAAAGTACGAGGAGAGTTAATACTCCCACTTATCCTTACCGCTTTGATATTGCAAGGGAAGAGGGGGGTTCAGAAACCTTCTTCCATCCTTCAA
GTTTACATAGAAGAGTCTAACCATGGGGCTTTCCATAGGGTGGGTTCTGATTATGCTCTAAATTTGTTGGTCAAACAGTTTTCTTCAAGTTTTTGGATGGAGAACCTTTTTCTTCGAGTCTTTGGATGGAGGGTTCTCCTTCATCCATTGCCGCTCCTTTGTTTGCTATAATATTAGCCTCTTGGTGGTTGGTTAAAGAG
TTTTCTTCAAGTCTTTGGATGGAGAGTTCTGCTTCATCCATTGCCGCTTCTTTGTTTGATAATATTAGCCTCTAGGTTGTTTTTTTGGAGGACATGGAAGAAGTGGCTCTTATGAACATCTTCAGCAGAATTTTTGTCTATTGAATGGTTCTGTTGATGATAGGGGAAGAGATACATCTGGCTTTATAAGAGCATTGGTG
ATGTGGGAGGAGTTCCCTACCACTCTGATCTCCTCACTGGTTCTAGAGGATAGGAAGTGGAGGCTTTGAAAAGCTGCCAATACTTTCGCTTCACTGTTTGTTGCCGTGCCTAACCTCACGCATATGACTACTTGATGCCTGCCACTCTTAATCATGGCAAGTATGCTTGGTTGAACAATTTTTATTCAGTAAATGACTAC
TTTTTATTCAGTTCTAAAGACTAAAACATGTGTTCTACAATTTGGACAGTCAGGAACTTTCTTAGATACTTTTCCTTTCTATTTTCCAAAGATGTTTCAGGTGAGAGCCAAAACAAATTTGGTTTTAGGGGACGAATGCTCTACACAACACTTCCCTTAACTGCTTGATTTCTAGGTGTGATAAAAGCAGGGAGTGGGGT
CCATTATGATATGACAAAGCTCTCCATGTCTTTGGATTCTCTAAAATTTCCCTTAAAAGAGTAGTTTCTGAAGTACATTTTGGGTTATTGGTTTAATTTTTTTTTTGATTTGTCTTGTCAGCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAA
GGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAGTGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGAT
gtgagagccaaaacaagtgagatgttagggggatgaatgcagcacactttccttaacttcttgatttctaggtgctaaatgcaaggagtgaggtcaattattatatgataatgtttttcatgttttcggattctctaaattttctctttacagggtagttttgcaagtacattttcagttcattggtttattgtattttc
attttcatttgtggcgtcagCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTG
Intron 13 GTAAGTGATG ... GTGGCGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.8 | 143.3 | 34.6 | 36.1 |
| A2 | 16.17 | 119.1 | 24.7 | 20.6 |
| A3 | 15.8 | 157.6 | 37.9 | 20 |
| A4 | 17.38 | 76.7 | 22.8 | 9 |
| A5 | 14.79 | 52.8 | 12.5 | 6 |
| A6 | 17.85 | 332.9 | 79.9 | 65.6 |
| A7 | 15.35 | 408.6 | 86.4 | 62.6 |
| A8 | 19.34 | 289 | 69.4 | 68.8 |
| A9 | 12.16 | 366 | 64.9 | 37.7 |
| A10 | 16.42 | 337.9 | 65.2 | 68.3 |
>TRINITY_DN119071_c0_g1_i4 from sample A1 / Example spliced isoformCTACTCAACCTAGGACCTTTAAAGGAACAACTTGAAGCTAGTTTAAATATAATTCAATTGTGAAGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGC
GTTTTATCTTCTTAGAAATACAGAACGCAAAGGAAAGGCACTGCAGCATTTTCTGTGGTTGAAACAGGTCACAGCTCAGAAATTTCAATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCA
TATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAG
TGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCAC
AGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCTTTGATGCGGAGGTTAACGCAGAATGGGAGCAGTGTATCTTCCCAAACATCAAATCCGGGAGGTGTACAAAGGTCATCTTCCCAAACATCAAATCAGGGAGGTGTACAAAGCTCATGGCGTACAGACGCTGATTTGAACACAGTGCGGCAATAT
ATCATACAGAGGATCTTGCAAGTATTTCACCGACAGCCAATTTCTTCAGATTGGCAACAGCGGCTACCCAACTTTGTGAGGTTCGTGGAGGAAGGTCTATTCAATGAGGCTGCTTCAAAGGAAGAATACATGAACTTAAATACTTTGGAGACGCGCATGCAATCTTTGGTGAGGCGAATTCGACCTATTGGTCCTGACTA
GAATCTAGTCATCACAACCTTCTTGTGAGAACAATGATACCCACTCTTGGATTGCAATCAAGTGGACCTTAAAATTTCAAGGACTTACTATGACTACGATGTTAGTATTTGTGCTGTGGGTGGCATTGATGTTACATATGTGGGGTCATTTGTTGTATAGGAATATGTTGACTGCTGTGTAGTGAAATCATTAGAATCTA
TGAAGTGATTTGTAGCCTTTTTGGGCTTTTATTCTTTGATATTAAAATACATTGAATTGCACACTTACGTCTGATTTTGTTTGCTGT
>TRINITY_DN119071_c0_g1_i7 from sample A1 / Example unspliced isoform:CTACTCAACCTAGGACCTTTAAAGGAACAACTTGAAGCTAGTTTAAATATAATTCAATTGTGAAGAGTGCTCACTTGTCATTCGATTATTTTGTCCTTATCTTATCTTTTTGCTCACATTTTTACCCGTAGTTGCTGTACTATGTGCTTGGCAAACCCTCTCATCTGAAAGAACGAAGGGTTAGCAAATAAGCAATCTGC
GTTTTATCTTCTTAGAAATACAGAACGCAAAGGAAAGGCACTGCAGCATTTTCTGTGGTTGAAACAGGTCACAGCTCAGAAATTTCAATTAGAGCTCTGAGCAGTACGCAGAGGGTGTTTGTGTCGATCTGAGGAGGCAGATGGATGGAGGTATACCAAGGTCATGGCGTGCAAACATGGACTTATATGCAGTGCGGCCA
TATACCATAGAGAGGATCTTGCAATTATTTCATCAGCATCCAGTTTCTGACGAATGGCAACAGCGGCTGCCCGCTTTTGTGAGGCGCTTGGAAGAAGGTCTATTCATCGAAGCTACTTCACAGGAAGAATACATGAACTTGAATACTTTGGAGCCACGCTTGCAATCTTTGATGCAGGGGTTAACACAAAATGGGAGCAG
TGAATCTTCCCAAACAGCAAATCTGGGAGGTATACGCAGGTCATGGCATACGGACACTGATTTATATGCAGTGCGGAAATATATGATCGAGAGGATgtaagtgatgaaagtcattatagcctttacatcaataacaactaagtcctatttcaaagttcagagtgtttgaaccaagaaaatcaaattgtgcttcaggtaag
gaaattagttaaccatcaagcatttgtagtcatgcacagcagctgcctctgcaaaacccagtgattcattatgacaagtatgcttggtggaacaatgtttgtcccatgctttttcccatgcttttttattcagttttatgggctaaagcatgtatgctacactttggagaggcaggaaatatcttgtatgctgtatgttt
tcccttctttattcccaaagatgtttcaggtgagagccaaaacaagtgagatgttagggggatgaatgcagcacactttccttaacttcttgatttctaggtgctaaatgcaaggagtgaggtcaattattatatgataatgtttttcatgttttcggattctctaaattttctctttacagggtagttttgcaagtaca
ttttcagttcattggtttattgtattttcattttcatttgtggcgtcagCTTGCAATTATTTCATCGGCAGCCAGTTTCTCCCGAATGGCAACAGCAGCTACCCGATTTTGTGAGGCGCTTGGAGGAAGGTCTATTCAACGAAGCTGCTTCACAGGAAGAATACATGGACTTGAATAATTTGGAGCAGCGCTTACAATCT
TTGGTAGGTGGCTTTTGATTCTTACTAAAGCTTAATATATTCATGGTTAAATAGATTTATGCTAATTTAGTATGGAGGTGAAAAATAAGATGGATTTATGTTAAAATAGGTATGGAGGGTGAAGAATATGTTGTAAGCTAAACTGGCATTGATCCACTAAACACGAGTTGTAAAACTTGTTTCTCAGAGATACTAGAGTG
TATCTACTATACCAACAAACCTGACCAAAAGATTCGTTTCTTGTTCCATTGCCCTACCCATTTCCATCTTGACC