sp|Q9SLA8|FABI_ARATH ----> Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic
Intron 1 GTTACCTAAG ... TCTACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.82 | 19 | 6 | 25 |
| A2 | 45 | 22 | 10 | 18 |
| A3 | 52.5 | 19 | 5 | 21 |
| A4 | 47.62 | 11 | 4 | 10 |
| A5 | 57.14 | 9 | 11 | 12 |
| A6 | 50 | 23 | 1 | 23 |
| A7 | 50.7 | 35 | 10.5 | 36 |
| A8 | 52.78 | 34 | 6 | 38 |
| A9 | 50.77 | 32 | 6 | 33 |
| A10 | 58.46 | 27 | 6 | 38 |
>TRINITY_DN44582_c0_g1_i11 from sample A9 / Example spliced isoformAAAGAGGCCAGTTGGACCCTCGACCTCGATGTCATTGCCGTGGTTGAACACAAGCTTGTCTGCATATCCGAGGTTTTGGGGAATGAGTAATAGAGGTTTTCTTAATGAGGGCGTACTTGTACAAGGGTTACACCAGTTTGAAGAAGAAATTCAATCTTTCAGCGATTTTTCCTTGTGGCTCCACTATTTACCAACGTTTC
ATATATAGATCCGAGCTTTCAGGAGAATGACGCAGCTAATAAAATAATCATGGGTCTGATACTAATGAAGGAGGGCGCAACTCTCACTTCCACCAATAAAATTCGTTCTGAGAAATAGGGATTTTTTCCATTTGGGAAGGATGCAGCCCCTTTGTGGAGTAGCTTGGACACTAGGTCCAGGGATATATTATGTTTACCGT
CAATTCTTAGCAAGAAGAGAGATGATATTAGTGTTAGGTATTTATGTTAAAGAATGGTGTACTAAGGACTGAATATATAATCTTTTATATTGCAAATGTGATCGCTACAGGCAGCCGAGAAGAGGGCATCGTCAGAGTTGACTAGGGTCCTTGGAGGGGACGATTTTCACTTCAAATTCATTATTGGCCTTTGAGGAGGG
CATATCCACTACTAGGAGGGATAAAGGGTATGAGAAGGTAGAGTGGGAGTAGCATCCAAGTCTGGGGTATCTAAATCGTGGCCTTGGTTGAAGAAGATCTAAACCATTACAGAGATATTGTGGCCAAGGGGACGCATTTCACTGTTGCTATTAGAGGGATTAGAAGAAGAGTAAAAATCAATTGGAGGTGCAGAAGGAAA
AATCAGGAAGGTCAAACAAGAAATTTGATAATGTTAAGGCTATTGATCCAAAAATTTGCCAAGAGGGAGGAAACGACTCAGGGAAAAGAGCATTTATTGCTGGAATAGCAGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGTGGAAATTCTAGTTGGCACGTGGGTTCCGGCCCTGAAG
ATTTTTGAAACCAGCTTGAAACAAGGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTCTGATGGAGATCTCTAAGATTTATCCTCTGGATGCTATTTATGACACTCCCAAGGATGTTCCTGAAGATGAAAATATATTAAGCAGACAATTCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGGTATTAAGTGAAA
TAGATAAAAACAAACAAAAGGTATGCGGGAGCCTCAAATTGGATAGTTCAGGAAGTTGCAGAGTCTGTAAAACAGGACTTTGGAAGCATCGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGAAATGGCTACCTTGCATCTGTTCCAGCCTCAAGTTATTCCATTGT
GTCATTGCTAAAGCACTTTATACTATAATGAATCCTGGCGGTCAACAATATCTCACATATATTGCATCAGAATGGATCATTCTGGGATATGGTGGAGGAATGAGTTCTGCAAAAGCTGCCCTGGAAAGTGATACTAGGGTGCTTGCTTTTGAAGCTGGAAGATGCTACAACATAAGAGTGAATACAATTTCAACAGGCCC
CCTGAGAAGCAGAGCTGCAAAGGCCATTGGATTTATAGATACCATAATTGAATACTCAATAGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCTTGTAATGCAATTCCATCTTTTTGTAATTCCTCTTTTATGGGATTATGTTCAAGGCATATTGCAAGATCATGCAGCGAGCTTAGATTGTTTATCGGATAATCAGAAA
ACAGACTGAGCTTTTCTGCTGATATGTAGTACGTTGCAACTTGTTTTCATGATGAGATTGGAAACGCTGCAGCATTTTTATCTTCACCATTAGCCGCTGCAATAACTGGGACAGTTGCATATGTTGACAATGGGTTGCATTCTATAGGAGTTGGAGTGGATAGTCCATCCTTTTCTGAACTTGCAATGCCACAAGCAGAA
AAAAGAAAGGCTCCAACAAGATACCATACCATATTTGTTTGGTATATAGCAAACAAGTCGTGAAATCAGTCTATCACAGGTTGCCACATCCAACAAGTGACTGGTGCCTTTCAAGTGGAATTTGAAAGCAAACTTCTATTCCTAATCCTACATTATGGGAAACCATCTCCCATTGATAAAGAGTATAATTGACTTTCTAG
AAGCGAAATGTCTAACTTGGAGTGATGCTCATTCATCACAATAGCCTCAAATCTTGAGTTCTGAGCAATGAAACCCCTTAAATCCACATCTGGCTGGACCTCTGTTGGAACGGCAGTGGAGATGAAATCCCACTCACGATTGAATTGTATTTGTGTTGGGAATTTAGGGTGCTCAAAGTCTACAATTTTCTTTTGTTAGT
TTGTAGTTACAAGTACTATAAAAAGTTACTGTTTTATTCAAGTTTGTGGGTACACAGTTTCTGCAAAATAGATTTATG
>TRINITY_DN44582_c0_g1_i7 from sample A9 / Example unspliced isoform:AAAGAGGCCAGTTGGACCCTCGACCTCGATGTCATTGCCGTGGTTGAACACAAGCTTGTCTGCATATCCGAGGTTTTGGGGAATGAGTAATAGAGGTTTTCTTAATGAGGGCGTACTTGTACAAGGGTTACACCAGTTTGAAGAAGAAATTCAATCTTTCAGCGATTTTTCCTTGTGGCTCCACTATTTACCAACGTTTC
ATATATAGATCCGAGCTTTCAGGAGAATGACGCAGCTAATAAAATAATCATGGGTCTGATACTAATGAAGGAGGGCGCAACTCTCACTTCCACCAATAAAATTCGTTCTGAGAAATAGGGATTTTTTCCATTTGGGAAGGATGCAGCCCCTTTGTGGAGTAGCTTGGACACTAGGTCCAGGGATATATTATGTTTACCGT
CAATTCTTAGCAAGAAGAGAGATGATATTAGTGTTAGGTATTTATGTTAAAGAATGGTGTACTAAGGACTGAATATATAATCTTTTATATTGCAAATGTGATCGCTACAGGCAGCCGAGAAGAGGGCATCGTCAGAGTTGACTAGGGTCCTTGGAGGGGACGATTTTCACTTCAAATTCATTATTGGCCTTTGAGGAGGG
CATATCCACTACTAGGAGGGATAAAGGGTATGAGAAGGTAGAGTGGGAGTAGCATCCAAGTCTGGGGTATCTAAATCGTGGCCTTGGTTGAAGAAGATCTAAACCATTACAGAGATATTGTGGCCAAGGGGACGCATTTCACTGTTGCTATTAGAGGGATTAGAAGAAGAGTAAAAATCAATTGGAGGTGCAGAAGGAAA
AATCAGGAAGGTCAAACAAGAAATTTGATAATGTTAAGGCTATTGATCCAAAAATTTGCCAAGAGGGAGGAAACGACTCAGGGAAAAGAGCATTTATTGCTGGAATAGCAGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGTGGAAATTCTAGTTGGCACGTGGGTTCCGGCCCTGAAG
ATTTTTGAAACCAGCTTGAAACAAGGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTCTGATGGAGATCTCTAAGATTTATCCTCTGGATGCTATTTATGACACTCCCAAGGATGTTCCTGAAGATGAAAATATATTAAGCAGACAATTCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGGTATTAAGTGAAA
TAGgttacctaaggggatgaaggccatttttatgctcttagtatcttttaagcaaattttcaaatctaatttatctggaaggacctagaatttggggcactaattaagttattctattctactacagATAAAAACAAACAAAAGGTATGCGGGAGCCTCAAATTGGATAGTTCAGGAAGTTGCAGAGTCTGTAAAACAGG
ACTTTGGAAGCATCGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGAAATGGCTACCTTGCATCTGTTCCAGCCTCAAGTTATTCCATTGTGTCATTGCTAAAGCACTTTATACTATAATGAATCCTGGCGGTCAACAATATCTCACATATATTGCATCAGAATGGA
TCATTCTGGGATATGGTGGAGGAATGAGTTCTGCAAAAGCTGCCCTGGAAAGTGATACTAGGGTGCTTGCTTTTGAAGCTGGAAGATGCTACAACATAAGAGTGAATACAATTTCAACAGGCCCCCTGAGAAGCAGAGCTGCAAAGGCCATTGGATTTATAGATACCATAATTGAATACTCAATAGCAAACGCTCCCTTG
CAAAAGGATTTGCTAGCTTGTAATGCAATTCCATCTTTTTGTAATTCCTCTTTTATGGGATTATGTTCAAGGCATATTGCAAGATCATGCAGCGAGCTTAGATTGTTTATCGGATAATCAGAAAACAGACTGAGCTTTTCTGCTGATATGTAGTACGTTGCAACTTGTTTTCATGATGAGATTGGAAACGCTGCAGCATT
TTTATCTTCACCATTAGCCGCTGCAATAACTGGGACAGTTGCATATGTTGACAATGGGTTGCATTCTATAGGAGTTGGAGTGGATAGTCCATCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGAAAGGCTCCAACAAGATACCATACCATATTTGTTTGGTATATAGCAAACAAGTCGTGAAATCAGTCTATCA
CAGGTTGCCACATCCAACAAGTGACTGGTGCCTTTCAAGTGGAATTTGAAAGCAAACTTCTATTCCTAATCCTACATTATGGGAAACCATCTCCCATTGATAAAGAGTATAATTGACTTTCTAGAAGCGAAATGTCTAACTTGGAGTGATGCTCATTCATCACAATAGCCTCAAATCTTGAGTTCTGAGCAATGAAACCC
CTTAAATCCACATCTGGCTGGACCTCTGTTGGAACGGCAGTGGAGATGAAATCCCACTCACGATTGAATTGTATTTGTGTTGGGAATTTAGGGTGCTCAAAGTCTACAATTTTCTTTTGTTAGTTTGTAGTTACAAGTACTATAAAAAGTTACTGTTTTATTCAAGTTTGTGGGTACACAGTTTCTGCAAAATAGATTTA
TG
Intron 2 GTTCGTATTT ... TGATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.6 | 55 | 11 | 52 |
| A2 | 47.9 | 62 | 0.3 | 57 |
| A3 | 45.53 | 67 | 2 | 56 |
| A4 | 46 | 27 | 0 | 23 |
| A5 | 46.91 | 43 | 0 | 38 |
| A6 | 43.72 | 112 | 0 | 87 |
| A7 | 45.77 | 173 | 0 | 146 |
| A8 | 45.12 | 90 | 0 | 74 |
| A9 | 45.61 | 124 | 0 | 104 |
| A10 | 45.11 | 101 | 0 | 83 |
>TRINITY_DN130862_c1_g1_i4 from sample A1 / Example spliced isoformCACAGCTCCGTTATACTAAAGGTTTTGCATAGATCAGACAGAAACTTGGGCTGTGGCATTGATGTCTTTTAAGTACCTGAAAGCCATGGCTGCTGCAACTGGCTCTGGGCTTCAATTAGCTAGGGCTGCACTTTTCTCTTCTCAGTCAAATTCGGCGCCCATGACTGCCCGCTCAGGAGTCTGTAATCTGACACCCATTA
TCTCATTTGCTTCCTCTCGAGGAACCCTTCTGCAATCCTCTTCTTTTCTCCCTTCTACTTTGCAGCTATCTAGGACCATTAAAACAGAGGCTGTTAAGCTCAGAAGAGGACCTACAGAGATCCGGGCTGTTGCCAATGATAACGGAGCGCCCTCTGGACTTTCCATTGATTTGAGAGGAAAAAGAGCATTTATTGCTGGA
ATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCCTGAAACGAGGCAAGTTTGATGAATCACGTGTGCTGCCGAATGGTTCTATGATGGAGATCTCTAAGATTTATCCTCTGGATGCTATCTA
TGATACTCTCGAGGATGTTCCTGAAGATGTAAAAGCAAACAAGAGGTATGCGGGAGCTTCAAATTGGACAGTTCAGGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGAAAGGGGTACCTTGCAGCTG
TTTCAGCTTCAAGTTATTCCTTTGTGTCACTGCTGAAGCACTTTATACCTATAATGAATCCTGGCGGGTCGACGATATCTCTCACATATATTGCATCAGAAAGGATCATTCCGGGATACGGTGGAGGAATGAGTTCTGCAAAAGCTGCTCTCGAAAGTGACACTAGGGTGCTTGCTTTTGAAGCTGGAAGACGCTACGGC
GTAAGAGTGAATACAATTTCAGCAGGCCCCTTGAGAAGCAGAGCTGCAAGGGCCATTGGATTTATAGATACTATAATTGAATACTCAATGGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCCGATGAGATTGGGAACGCTGCAGCATTTTTAGCTTCACCATTGGCCTCTGCAATAACTGGCACAGTTGCATATGTTGA
CAATGGGTTGCATGCTATGGGAGTTGGAGTGGATAGTCCAGCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGCAAGACTCCAGCATGATACCATACCATATTTGTTTGGTATATAGCAAACAAGTCATGAAATCAGTCTATCACAGGTTGCCACATCTAACAAGTGACCGGTGCCTTTCAAGTGGAATATGGGT
GGTCTCTAGCTATGGTAGAGTTTTTTTATTTGATTCTTTAGTCCTGTAAGGCAGTTTGTTTGTTAGTATAAACTCTAAAAATTGAGCATTGAGGATTGTAAGTTCTTTTCTCGCTAAGAAAGGCTATTTATAAAGCAATGGATTCATGGAGGAATTATAGAGAGGTATATCCCCTTCAGGTTAAATTGAAGGCATCTTTG
CATATGTTCTCACTAGTTATGGCAATTTAGAATAATGCTCCATCAGGTGGAGGGGTTTGATCTCCTTTTAATATGAAGACATTGTTAAAGAGTTTATGGGGCAAGCAATCGAAAAGTTCCTG
>TRINITY_DN130862_c1_g1_i9 from sample A1 / Example unspliced isoform:GGCATTGATGTCTTTTAAgttcgtatttgtgctctatagtggtttttaattctaatacgatgtagtggtttttaatgctaatatgatggagtggtttttaatacaaatatcatgatgtacagGTACCTGAAAGCCATGGCTGCTGCAACTGGCTCTGGGCTTCAATTAGCTAGGGCTGCACTTTTCTCTTCTCAGTCAAA
TTCGGCGCCCATGACTGCCCGCTCAGGAGTCTGTAATCTGACACCCATTATCTCATTTGCTTCCTCTCGAGGAACCCTTCTGCAATCCTCTTCTTTTCTCCCTTCTACTTTGCAGCTATCTAGGACCATTAAAACAGAGGCTGTTAAGCTCAGAAGAGGACCTACAGAGATCCGGGCTGTTGCCAATGATAACGGAGCGC
CCTCTGGACTTTCCATTGATTTGAGAGGAAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGTTCGTCAGAATAAGCTTGAGACTGTCTTTCTTTTCAGTTTTTTAGTCAGTAAAAAATGAAAG
CTTGTCTTTAAGACTAATTTATATTATGTTTAATCTAGAAACCTCGCTATG
Intron 3 GTCCAGGGAT ... ATCGCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 93.33 | 1 | 16 | 12 |
| A2 | 90.91 | 2 | 18 | 22 |
| A3 | 81.25 | 3 | 14 | 12 |
| A4 | 100 | 0 | 5 | 10 |
| A5 | 54.29 | 8 | 12 | 7 |
| A6 | 64.71 | 3 | 7 | 4 |
| A7 | 70.83 | 7 | 13 | 21 |
| A8 | 75 | 4 | 12 | 12 |
| A9 | 77.78 | 5 | 17 | 18 |
| A10 | 78.95 | 6 | 13 | 32 |
>TRINITY_DN45639_c0_g1_i2 from sample A8 / Example spliced isoformAAAGAGGCCAGTTGGACCCTCGACCTCGATGTCATTGCCGTGGTTGAACACAAGCTTGTCTGCATATCCGAGGTTTTGGGGAATGAGTAATAGAGGTTTTCTTAATGAGGGCGTACTTGTACAAGGGTTACACCAGTTTGAAGAAGAAATTCAATCTTTCAGCGATTTTTCCTTGTGGCTCCACTATTTACCAACGTTTC
ATATATAGATCCGAGCTTTCAGGAGAATGACGCAGCTAATAAAATAATCATGGGTCTGATACTAATGAAGGAGGGCGCAACTCTCACTTCCACCAATAAAATTCGTTCTGAGAAATAGGGATTTTTTCCATTTGGGAAGGATGCAGCCCCTTTGTGGAGTAGCTTGGACACTAGGCAGCCGAGAAGAGGGCATCGTCAGA
GTTGACTAGGGTCCTTGGAGGGGACGATTTTCACTTCAAATTCATTATTGGCCTTTGAGGAGGGCATATCCACTACTAGGAGGGATAAAGGGTATGAGAAGGTAGAGTGGGAGTAGCATCCAAGTCTGGGGTATCTAAATCGTGGCCTTGGTTGAAGAAGATCTAAACCATTACAGAGATATTGTGGCCAAGGGGACGCA
TTTCACTGTTGCTATTAGAGGGATTAGAAGAAGAGTAAAAATCAATTGGAGGTGCAGAAGGAAAAATCAGGAAGGTCAAACAAGAAATTTGATAATGTTAAGGCTATTGATCCAAAAATTTGCCAAGAGGGAGGAAACGACTCAGGGAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCAT
AGCAAAGTCCCTTGCTGCTGCTGGTGTGGAAATTCTAGTTGGCACGTGGGTTCCGGCCCTGAAGATTTTTGAAACCAGCTTGAAACAAGGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTCTGATGGAGATCTCTAAGATTTATGACACTCCCAAGGATGTTCCTGAAGATGAAAATATATTAAGCAGACAAT
TCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGGTATTAAGTGAAATAGGTTACCTAAGGGGATGAAGGCCATTTTTATGCTCTTAGTATCTTTTAAGCAAATTTTCAAATCTAATTTATCTGGAAGGACCTAGAATTTGGGGCACTAATTAATTTATTCTATTCTACTACAGATAAAAACAAACAAAAGGTATGCGGGA
GCCTCAAATTGGATAGTTCAGGAAGTTGCAGAGTCTATAAAACAGGACTTTGGAAGCATCGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGAAATGGCTACCTTGCATCTGTTCCAGCCTCAAGTTATTCCATTGTGTCATTGCTAAAGCACTTTATACTATAATG
AATCCTGGCGGTCAACAATATCTCACATATATTGCATCAGAATGGATCATTCTGGGATATGGTGGAGGAATGAGTTCTGCAAAAGCTGCCCTGGAAAGTGATACTAGGGTGCTTGCTTTTGAAGCTGGAAGATGCTACAACATAAGAGTGAATACAATTTCAACAGGCCCCCTGAGAAGCAGAGCTGCAAAGGCCATTGG
ATTTATAGATACCATAATTGAATACTCAATAGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCTTGTAATGCAATTCCATCTTTTTGTAATTCCTCTTTTATGGGATTATGTTCAAGGCATATTGCAAGATCATGCAGCGAGCTTAGATTGTTTATCGGATAATCAGAAAACAGACTGAGCTTTTCTGCTGATATGTAGT
ACGTTGCAACTTGTTTTCATGATGAGATTGGAAACGCTGCAGCATTTTTATCTTCACCATTAGCCGCTGCAATAACTGGGACAGTTGCATATGTTGACAATGGGTTGCATTCTATAGGAGTTGGAGTGGATAGTCCATCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGAAAGGCTCCAACAAGATACCATACC
ATATTTGTTTGGTATATAGCAAACAAGTCGTGAAATCAGTCTATCACAGGTTGCCACATCCAACAAGTGACTGGTGCCTTTCAAGTGGAATTTGAAAGCAAACTTCTATTCCTAATCCTACATTATGGGAAACCATCTCCCATTGATAAAGAGTATAATTGACTTTCTAGAAGCGAAATGTCTAACTTGGAGTGATGCTC
ATTCATCACAATAGCCTCAAATCTTGAGTTCTGAGCAATGAAACCCCTTAAATCCACATCTGGCTGGACCTCTGTTGGAACGGCAGTGGAGATGAAATCCCACTCACGATTGAATTGTATTTGTGTTGGGAATTTAGGGTGCTCAAAGTCTACAATTTTCTTTTGTTAGTTTGTAGTTACAAGTACTATAAAAAGTTACT
GTTTTATTCAAGTTTGTGGGTACACAGTTTCTGCAAAATAGATTTATGGGCTAGTATGAGTTTATAGTTTCTTATAATATAGATTGGCAAGATTTTTTGGAGTAATTGGGAAGCATATAGAGTCCAAATGGATTACACCAATCCCCAAAAACTAATAGTTCAAGACTTTAGTGAGAAACTAGCCCTTAAACTAATATAAT
CACCAAAATGACTTCTCATATTT
>TRINITY_DN45639_c0_g1_i3 from sample A8 / Example unspliced isoform:AAAGAGGCCAGTTGGACCCTCGACCTCGATGTCATTGCCGTGGTTGAACACAAGCTTGTCTGCATATCCGAGGTTTTGGGGAATGAGTAATAGAGGTTTTCTTAATGAGGGCGTACTTGTACAAGGGTTACACCAGTTTGAAGAAGAAATTCAATCTTTCAGCGATTTTTCCTTGTGGCTCCACTATTTACCAACGTTTC
ATATATAGATCCGAGCTTTCAGGAGAATGACGCAGCTAATAAAATAATCATGGGTCTGATACTAATGAAGGAGGGCGCAACTCTCACTTCCACCAATAAAATTCGTTCTGAGAAATAGGGATTTTTTCCATTTGGGAAGGATGCAGCCCCTTTGTGGAGTAGCTTGGACACTAGgtccagggatatattatgtttaccgt
caattctaaagcaagaagagagatgatattagtgttaggtatttatgttaaagaatggtgtactaaggactgaatatataatcttttatattgcaaatgtgatcgctacagGCAGCCGAGAAGAGGGCATCGTCAGAGTTGACTAGGGTCCTTGGAGGGGACGATTTTCACTTCAAATTCATTATTGGCCTTTGAGGAGG
GCATATCCACTACTAGGAGGGATAAAGGGTATGAGAAGGTAGAGTGGGAGTAGCATCCAAGTCTGGGGTATCTAAATCGTGGCCTTGGTTGAAGAAGATCTAAACCATTACAGAGATATTGTGGCCAAGGGGACGCATTTCACTGTTGCTATTAGAGGGATTAGAAGAAGAGTAAAAATCAATTGGAGGTGCAGAAGGAA
AAATCAGGAAGGTCAAACAAGAAATTTGATAATGTTAAGGCTATTGATCCAAAAATTTGCCAAGAGGGAGGAAACGACTCAGGGAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGTGGAAATTCTAGTTGGCACGTGGGTTCCGGCCCTGAA
GATTTTTGAAACCAGCTTGAAACAAGGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTCTGATGGAGATCTCTAAGATTTATGACACTCCCAAGGATGTTCCTGAAGATGTAAATATCATAATCCTATCACAACCATAATTAGATATTTTTTTTGTTTAAATCTTTGATTCCATTCCTGATTTGTCGATATGCT
GAGCTTTAAAGTTTGTCTACTTTGGTACAGGAAAATATATTAAGCAGACAATTCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGGTATTAAGTGAAATAGGTTACCTAAGGGGATGAAGGCCATTTTTATGCTCTTAGTATCTTTTAAGCAAATTTTCAAATCTAATTTATCTGGAAGGACCTAGAATTTGGGGCACTA
ATTAATTTATTCTATTCTACTACAGATAAAAACAAACAAAAGGTATGCGGGAGCCTCAAATTGGATAGTTCAGGAAGTTGCAGAGTCTATAAAACAGGACTTTGGAAGCATCGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGAAATGGCTACCTTGCATCTGTTC
CAGCCTCAAGTTATTCCATTGTGTCATTGCTAAAGCACTTTATACTATAATGAATCCTGGCGGTCAACAATATCTCACATATATTGCATCAGAATGGATCATTCTGGGATATGGTGGAGGAATGAGTTCTGCAAAAGCTGCCCTGGAAAGTGATACTAGGGTGCTTGCTTTTGAAGCTGGAAGACGCTACAACATAAGAG
TGAATACAATTTCAACAGGCCCCCTGAGAAGCAGAGCTGCAAAGGCCATTGGATTTATAGATACCATAATTGAATACTCAATAGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCTGATGAGATTGGAAACGCTGCAGCATTTTTATCTTCACCATTAGCCGCTGCAATAACTGGGACAGTTGCATATGTTGACAATGGG
TTGCATGCTATGGGAGTTGGAGTGGATAGTCCAGCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGCAAGACTCCAGCATGATACCATACCATATTTGTTTGGTATATAGCAAACAAGTCGTGAAATCAGTCTATCACAGGTTGCCACATCTAACAAGTGACCGGTGCCTTTCAAGTGGAATATGGGTGGTCTCT
AGCTATGGTAGAGTTTTTTTATTTGATTCTTTAGTCCTGTAAGGCAGTTTGTTTGTTAGTATAAACTCTAAAAATTGAGCATTGAGGATTGTAAGTTCTTTTCTCGCTAAGAAAGGCTATTTATAAAGCAATGGATTCATGGAGGAATTATAGAGAGGTATATCCCCTTCAGGTTAAATTGAAGGCATCTTTGCATATGT
TCTCACTAGTTATGGCAATTTAGAATAATGCTCCATCAGGTGGAGGGGTTTGATCTCCTTTTAATATGAAGACATTGTTAAAGAGTTTATGGGGCAAGCAATCGAAAAGTTCCTGTAGCCTGTAGATATTGGTCTTACATTTTAATGTTTTATTTGTTTGTTGCTTGGCCTATTTTTTGGAAAATTATTTTCAAAATATT
TTGAGGCAATCCTTTGTGTATACTTGGCGCA
Intron 4 GTAAGGACTC ... TAAAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.11 | 208 | 93 | 2 |
| A2 | 27.56 | 151.7 | 57 | 0 |
| A3 | 29.25 | 207 | 85 | 0 |
| A4 | 25.13 | 157.7 | 52 | 1 |
| A5 | 24.29 | 103.3 | 33 | 2 |
| A6 | 25.77 | 417.7 | 144 | 0 |
| A7 | 26.71 | 432.7 | 156 | 0 |
| A8 | 27.77 | 301 | 115 | 0 |
| A9 | 25.1 | 468.3 | 156 | 0 |
| A10 | 26.39 | 331.7 | 118 | 0 |
>TRINITY_DN108247_c0_g1_i2 from sample A5 / Example spliced isoformTGGGAAAATATCTTCCGTGCCCACATCTTCTCGTTTGTTTTCCCGGCCTGAAAACATTAGTGGGTTTTGATCTAAGAACTTTTAAGCAGCTGCAGCCACAATCAAGGTACCTGAAAGCCATGGCTGCTGCAACTGGCTCTGGGCTTCAATTAGCTAGGGCTGCACTTTTCTCTTCTCAGTCAAATTCGGCGCCCATGACT
GCCCGCTCAGGAGTCTGTAATCTGACACCCATTATCTCATTTGCTTCCTCTCGAGGAACCCTTCTGCAATCCTCTTCTTTTCTCCCTTCTACTTTGCAGCTATCTAGGACCATTAAAACAGAGGCTGTTAAGCTCAGAAGAGGACCTACAGAGATCCGGGCTGTTGCTAATGATAACGGAGCGCCCTCTGGACTTTCCAT
TGATTTGAGAGGAAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCCTGAAACGAGGCAAGTTTGATGAATCACGTGTGCTGCCGAATGGTTCTATGATGG
AGATCTCTAAGATTTATCCTCTGGATGCTATCTATGATACTCTCGAGGATGTTCCTGAAGATGTAAAAGCAAACAAGAGGTATGCGGGAGCTTCAAATTGGACAGTTCAGGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCACTTGCAAATGGTCCAGAGGTCAGTAAACCTCTT
CTTGAGACATCAAGAAAGGGGTACCTTGCAGCTGTTTCAGCTTCAAGTTATTCCTTTGTGTCACTGCTGAAGCACTTTATACCTATAATGAATCCTGGCGGGTCGACGATATCTCTCACATATATTGCATCAGAAAGGATCATTCCGGGATACGGTGGAGGAATGAGTTCTGCAAAAGCTGCTCTCGAAAGTGACACTAG
GGTGCTTGCTTTTGAAGCTGGAAGACGCTATGGCGTAAGAGTGAATACAATTTCAGCAGGCCCCTTGAGAAGCAGAGCTGCAAGGGCCATTGGATTTATAGATACTATAATTGAATACTCAATGGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCCGATGAGATTGGGAACGCTGCAGCATTTTTAGCTTCACCATTGG
CCTCTGCAATAACTGGCACAGTTGCATATGTTGACAATGGGTTGCATGCTATGGGAGTTGGAGTGGATAGTCCAGCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGCAAGACTCCAGCATGATACTATACCATATTTCTTTCGTATATAGTTAATGAGCAATCTATCACAGGTTGCCACATCTAACAAGTGTTC
TGTGCCTTTCAAGTGGAATGTGGGTAATCTCTAGTTACGATGTAGTTTTTTGATTTGATGCTTTAGTCCAGTGAGGCAGTTTGTTTGTTAGCATAAACCCTAAACCTTGAGCATGGGAAATGTAAGTAATTTTCCCGCAAAGAAAGGCTATTTAGAAAGCAATGGATTCATGGGGAAATTTTCTCGCCAAGAAAGGCTAT
CTAGAAAGCAATGGATTCATGGAGAAATTTTATCGAGGTATAATCCTCTTTGTTCAGATTAATTTGAAGGCATCTTTGCATTTCTTCTCTATAGGTATGGCATAGAATAATGTTGCATCAGGCGGAGGGGTTTCATCTCCACTTAATTTGAAGAGACCGTTAAAGACATTATGGAGCAAGCAAAAGAAAAGTTGCCGTAG
CCTGGAGATTTGGTGTTCCACATTTTGTTTGTTTGGCCTATTTTTTGGAAAATATTATCAAGAGGTTTTGAATTGCTAAAACTAGGTTCAGGCAATCATTTGGATACTTTTTGCTGGAATTTAAAAAACAATAAATTTTATTAAAAACGAACACGAAATATTCTCGATATTTTGTACAAAATTTCCTACCGTTGTCTTAC
AGGGTACAAAATTTCCTTCCGCTGTCTTACAGGGTTTTAATAAAGCGGAGTTCTTATGCACCG
>TRINITY_DN108247_c0_g1_i5 from sample A5 / Example unspliced isoform:TGGGAAAATATCTTCCGTGCCCACATCTTCTCGTTTGTTTTCCCGGCCTGAAAACATTAGTGGGTTTTGATCTAAGAACTTTTAAGCAGCTGCAGCCACAATCAAGGTACCTGAAAGCCATGGCTGCTGCAACTGGCTCTGGGCTTCAATTAGCTAGGGCTGCACTTTTCTCTTCTCAGTCAAATTCGGCGCCCATGACT
GCCCGCTCAGGAGTCTGTAATCTGACACCCATTATCTCATTTGCTTCCTCTCGAGGAACCCTTCTGCAATCCTCTTCTTTTCTCCCTTCTACTTTGCAGCTATCTAGGACCATTAAAACAGAGGCTGTTAAGCTCAGAAGAGGACCTACAGAGATCCGGGCTGTTGCTAATGATAACGGAGCGCCCTCTGGACTTTCCAT
TGATTTGAGAGGAAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCCTGAAACGAGGCAAGTTTGATGAATCACGTGTgtaaggactctttgaaacatatt
tattagtttgcaaggtgttttttattcatgcatgttaaggcaaaagtctcagtttgtttataaattaaacatctatttggaataaccaaagctacaatttttaaagtgcagGCTGCCGAATGGTTCTATGATGAAG
Intron 5 GTACTTTTAC ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.6 | 196 | 42 | 66 |
| A2 | 21.66 | 170 | 42 | 52 |
| A3 | 19.76 | 266 | 61 | 70 |
| A4 | 21.32 | 203 | 66 | 44 |
| A5 | 20.44 | 109 | 27 | 29 |
| A6 | 20.02 | 735 | 143 | 225 |
| A7 | 21.78 | 756 | 215 | 206 |
| A8 | 19.95 | 678 | 165 | 173 |
| A9 | 20.75 | 630 | 167 | 163 |
| A10 | 20.5 | 545 | 147 | 134 |
>TRINITY_DN44582_c0_g1_i10 from sample A9 / Example spliced isoformGGGAAAATATCTTCCGTGCCCACATCTTCTCGTTTGTTTTCCCGGCCTGAAAACATTAGTGGGTTTTGATCTAAGAACTTTTAAGCAGCTGCAGCCACAATCAAGGTACCTGAAAGCCATGGCTGCTGCAACTGGCTCTGGGCTTCAGTTAGCTAGGGCTGCACTTTTCTCTTCTCAGTCAAATTCGGCGCCCATGACTG
CCCGCTCAGGAGTCTGTAATCTGACACCCATTATCTCATTTGCTTCCTCTCGAGGAACCCTTCTGCAATCCTCTTCTTTTCTCCCTTCTACTTTGCAGCTATCTAGGACCATTAAAACAGAGGCTGTTAAGCTCAGAAGAGGACCTACAGAGATCCGGGCTGTTGCCAATGATAACGGAGCGCCCTCTGGACTTTCCATT
GATTTGAGAGGAAAAAGAGCATTTATTGCTGGAATAGCAGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCCTGAAACGAGGCAAGTTTGATGAATCACGTGTGCTGCCGAATGGTTCTATGATGGA
GATCTCTAAGATTTATCCTCTGGATGCTATCTATGATACTCTCGAGGATGTTCCTGAAGATGTAAAAGCAAACAAGAGGTATGCGGGAGCTTCAAATTGGACAGTTCAGGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTC
TTGAGACATCAAGAAAGGGGTACCTTGCAGCTGTTTCAGCTTCAAGTTATTCCTTTGTGTCACTGCTGAAGCACTTTATACCTATAATGAATCCTGGCGGGTCGACGATATCTCTCACATATATTGCATCAGAAAGGATCATTCCGGGATACGGTGGAGGAATGAGTTCTGCAAAAGCTGCTCTCGAAAGTGACACTAGG
GTTCTTGCTTTTGAAGCTGGAAGACGCTACGGCGTAAGAGTGAATACAATTTCAGCAGGTCCCTTGAGAAGCAGAGCTGCAAGGGCCATTGGATTTATAGATACTATAATTGAATACTCAATGGCAAATGCTCCCTTGCAAAAGGATTTGCTAGCCGATGAGATTGGGAACGCTGCAGCATTTTTAGCTTCACCATTGGC
CTCTGCAATAACTGGCACAGTTGCATATGTTGACAATGGGTTGCATGCTATGGGAGTTGGAGTGGATAGTCCAGCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGCAAGACTCCAGCATGATACTATACCATATTTCTTTCGTATATAGTTAATGAGCAATCTATCACAGGTTGCCACATCTAACAAGTGTTCT
GTGCCTTTCAAGTGGAATGTGGGTAATCTCTAGTTACGATGTAGTTTTTTGATTTGATGCTTTAGTCCAGTGAGGCAGTTTGTTTGTTAGCATAAACCCTAAACCTTGAGCATGGGAAATGTAAGTAATTTTCCCGCAAAGAAAGGCTATTTAGAAAGCAATGGATTCATGGGGATATTTTCTCGCCAAGAAAGGCTATC
TAGAAAGCAATGGATTCATGGAGAAATTTTATCGAGGTATAATCCTCTTTGTTCAGATTAATTTGAAGGCATCTTTGCATTTCTTCTCTATAGGTATGGCATAGAATAATGTTGCATCAGGCGGAGGGGTTTCATCTCCACTTAATTTGAAGAGACCGTTAAAGACATTATGGAGCAAGCAAAAGAAAAGTTGCCGTAGC
CTGGAGATTTGGTGTTCCACATTTTGTTTGTTTGGCCTATTTTTTGGAAAATATTATCAAGAGGTTTTGAATTGCTAAAACTAGGTTCAGGCAATCATTTGGATACTTTTTGCTGGAATTTAAAAAACAATAAATTTTATTAAAAACGAACACGAAATATTCTCGATATTTTGTACAAAATTTCCTACCGTTGTCTTACA
GGGTACAAAATTTCCTTCCGCTGTCTTACAGGGTTTTAATAAAGCGGAGTTCTTATGTACCGAATCTAGAAGCTACTACAGATTGAATCTGCTCATATTATTGTTAATATCTGTTTCAAAGTGTAAAATATACTTCCAGCATCCCTTTCTTCCGACATGGGTCAAGGTCTACCTAACTCGAACAACAACGTTAC
>TRINITY_DN44582_c0_g1_i21 from sample A9 / Example unspliced isoform:GGGAAAATATCTTCCGTGCCCACATCTTCTCGTTTGTTTTCCCGGCCTGAAAACATTAGTGGGTTTTGATCTAAGAACTTTTAAGCAGCTGCAGCCACAATCAAGGTACCTGAAAGCCATGGCTGCTGCAACTGGCTCTGGGCTTCAGTTAGCTAGGGCTGCACTTTTCTCTTCTCAGTCAAATTCGGCGCCCATGACTG
CCCGCTCAGGAGTCTGTAATCTGACACCCATTATCTCATTTGCTTCCTCTCGAGGAACCCTTCTGCAATCCTCTTCTTTTCTCCCTTCTACTTTGCAGCTATCTAGGACCATTAAAACAGAGGCTGTTAAGCTCAGAAGAGGACCTACAGAGATCCGGGCTGTTGCCAATGATAACGGAGCGCCCTCTGGACTTTCCATT
GATTTGAGAGGAAAAAGAGCATTTATTGCTGGAATAGCAGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCCTGAAACGAGGCAAGTTTGATGAATCACGTGTGCTGCCGAATGGTTCTATGATGGA
GATCTCTAAGATTTATCCTCTGGATGCTATCTATGATACTCTCGAGGATGTTCCTGAAGATGTAAAAGCAAACAAGAGGTATGCGGGAGCTTCAAATTGGACAGTTCAGGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTC
TTGAGACATCAAGAAAGGGGTACCTTGCAGCTGTTTCAGCTTCAAGTTATTCCTTTGTGTCACTGCTGAAGCACTTTATACCTATAATGAATCCTGGCGGGTCGACGATATCTCTCACATATATTGCATCAGAAAGGATCATTCCGGGATACGGTGGAGGAATGAGTTCTGCAAAAGCTGCTCTCGAAAGTGACACTAGG
GTTCTTGCTTTTGAAGCTGGAAGACGCTACGGCGTAAGAGTGAATACAATTTCAGCAGgtacttttacgaatatcatgatggaatcctttgaaattctcaatcatggccatgagttcagtgtcattgtgcatgtttaaattggctctttatctcttatctgctttagacttcgttatatgttttgcagGTCCCTTGAGAA
GCAGAGCTGCAAGGGCCATTGGATTTATAGATACTATAATTGAATACTCAATGGCAAATGCTCCCTTGCAAAAGGATTTGCTAGCCGATGAGATTGGGAACGCTGCAGCATTTTTAGCTTCACCATTGGCCTCTGCAATAACTGGCACAGTTGCATATGTTGACAATGGGTTGCATGCTATGGGAGTTGGAGTGGATAGT
CCAGCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGCAAGACTCCAGCATGATACTATACCATATTTCTTTCGTATATAGTTAATGAGCAATCTATCACAGGTTGCCACATCTAACAAGTGTTCTGTGCCTTTCAAGTGGAATGTGGGTAATCTCTAGTTACGATGTAGTTTTTTGATTTGATGCTTTAGTCCAG
TGAGGCAGTTTGTTTGTTAGCATAAACCCTAAACCTTGAGCATGGGAAATGTAAGTAATTTTCCCGCAAAGAAAGGCTATTTAGAAAGCAATGGATTCATGGGGATATTTTCTCGCCAAGAAAGGCTATCTAGAAAGCAATGGATTCATGGAGAAATTTTATCGAGGTATAATCCTCTTTGTTCAGATTAATTTGAAGGC
ATCTTTGCATTTCTTCTCTATAGGTATGGCATAGAATAATGTTGCATCAGGCGGAGGGGTTTCATCTCCACTTAATTTGAAGAGACCGTTAAAGACATTATGGAGCAAGCAAAAGAAAAGTTGCCGTAGCCTGGAGATTTGGTGTTCCACATTTTGTTTGTTTGGCCTATTTTTTGGAAAATATTATCAAGAGGTTTTGA
ATTGCTAAAACTAGGTTCAGGCAATCATTTGGATACTTTTTGCTGGAATTTAAAAAACAATAAATTTTATTAAAAACGAACACGAAATATTCTCGATATTTTGTACAAAATTTCCTACCGTTGTCTTACAGGGTACAAAATTTCCTTCCGCTGTCTTACAGGGTTTTAATAAAGCGGAGTTCTTATGTACCGAATCTAGA
AGCTACTACAGATTGAATCTGCTCATATTATTGTTAATATCTGTTTCAAAGTGTAAAATATACTTCCAGCATCCCTTTCTTCCGACATGGGTCAAGGTCTACCTAACTCGAACAACAACGTTAC
Intron 6 GTAAATATCA ... TTTGGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.36 | 7 | 4 | 1 |
| A2 | 25.11 | 9.2 | 3 | 3 |
| A3 | 44.55 | 2.5 | 2 | 1 |
| A4 | 54.55 | 3.8 | 4 | 6 |
| A5 | 28.15 | 10.4 | 4 | 0 |
| A6 | 59.98 | 3.4 | 5 | 1 |
| A7 | 37.44 | 20.1 | 12 | 3 |
| A8 | 49.17 | 11.5 | 11 | 4 |
| A9 | 32.44 | 20.9 | 10 | 0 |
| A10 | 27.88 | 18.3 | 7 | 1 |
>TRINITY_DN45639_c0_g1_i9 from sample A8 / Example spliced isoformAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGTGGAAATTCTAGTTGGCACGTGGGTTCCGGTTCGTCATAATAAGCTTGGGACTGTTGTAACTTTTTTCTTTTAGTCTTTGATGAATCAGCCCTGAAGATTTTTGAAACCAGCTTGAAACAA
GGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTCTGATGGAGATCTCTAAGATTTATGACACTCCCAAGGATGTTCCTGAAGATGAAAATATATTAAGCAGACAATTCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGATAAAAACAAACAAAAGGTATGCGGGAGCCTCAAATTGGA
>TRINITY_DN45639_c0_g1_i16 from sample A8 / Example unspliced isoform:AAAGAGGCCAGTTGGACCCTCGACCTCGATGTCATTGCCGTGGTTGAACACAAGCTTGTCTGCATATCCGAGGTTTTGGGGAATGAGTAATAGAGGTTTTCTTAATGAGGGCGTACTTGTACAAGGGTTACACCAGTTTGAAGAAGAAATTCAATCTTTCAGCGATTTTTCCTTGTGGCTCCACTATTTACCAACGTTTC
ATATATAGATCCGAGCTTTCAGGAGAATGACGCAGCTAATAAAATAATCATGGGTCTGATACTAATGAAGGAGGGCGCAACTCTCACTTCCACCAATAAAATTCGTTCTGAGAAATAGGGATTTTTTCCATTTGGGAAGGATGCAGCCCCTTTGTGGAGTAGCTTGGACACTAGGTCCAGGGATATATTATGTTTACCGT
CAATTCTAAAGCAAGAAGAGAGATGATATTAGTGTTAGGTATTTATGTTAAAGAATGGTGTACTAAGGACTGAATATATAATCTTTTATATTGCAAATGTGATCGCTACAGGCAGCCGAGAAGAGGGCATCGTCAGAGTTGACTAGGGTCCTTGGAGGGGACGATTTTCACTTCAAATTCATTATTGGCCTTTGAGGAGG
GCATATCCACTACTAGGAGGGATAAAGGGTATGAGAAGGTAGAGTGGGAGTAGCATCCAAGTCTGGGGTATCTAAATCGTGGCCTTGGTTGAAGAAGATCTAAACCATTACAGAGATATTGTGGCCAAGGGGACGCATTTCACTGTTGCTATTAGAGGGATTAGAAGAAGAGTAAAAATCAATTGGAGGTGCAGAAGGAA
AAATCAGGAAGGTCAAACAAGAAATTTGATAATGTTAAGGCTATTGATCCAAAAATTTGCCAAGAGGGAGGAAACGACTCAGGGAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGTGGAAATTCTAGTTGGCACGTGGGTTCCGGCCCTGAA
GATTTTTGAAACCAGCTTGAAACAAGGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTCTGATGGAGATCTCTAAGATTTATGACACTCCCAAGGATGTTCCTGAAGATgtaaatatcataatcctatcacaaccataattagatattttttttgtttaaatctttgattccattcctgatttgtcgatatgct
gagctttaaagtttgtctactttggtacagGAAAATATATTAAGCAGACAATTCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGGTATTAAGTGAAATAGGTTACCTAAGGGGATGAAGGCCATTTTTATGCTCTTAGTATCTTTTAAGCAAATTTTCAAATCTAATTTATCTGGAAGGACCTAGAATTTGGGGCACTA
ATTAATTTATTCTATTCTACTACAGATAAAAACAAACAAAAGGTATGCGGGAGCCTCAAATTGGATAGTTCAGGAAGTTGCAGAGTCTATAAAACAGGACTTTGGAAGCATCGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGAAATGGCTACCTTGCATCTGTTC
CAGCCTCAAGTTATTCCATTGTGTCATTGCTAAAGCACTTTATACTATAATGAATCCTGGCGGTCAACAATATCTCACATATATTGCATCAGAATGGATCATTCTGGGATATGGTGGAGGAATGAGTTCTGCAAAAGCTGCCCTGGAAAGTGATACTAGGGTGCTTGCTTTTGAAGCTGGAAGATGCTACAACATAAGAG
TGAATACAATTTCAACAGGCCCCCTGAGAAGCAGAGCTGCAAAGGCCATTGGATTTATAGATACCATAATTGAATACTCAATAGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCTTGTAATGCAATTCCATCTTTTTGTAATTCCTCTTTTATGGGATTATGTTCAAGGCATATTGCAAGATCATGCAGCGAGCTTAGA
TTGTTTATCGGATAATCAGAAAACAGACTGAGCTTTTCTGCTGATATGTAGTACGTTGCAACTTGTTTTCATGATGAGATTGGAAACGCTGCAGCATTTTTATCTTCACCATTAGCCGCTGCAATAACTGGGACAGTTGCATATGTTGACAATGGGTTGCATTCTATAGGAGTTGGAGTGGATAGTCCATCCTTTTCTGA
ACTTGCAATGCCACAAGCAGAAAAAAGAAAGGCTCCAACAAGATACCATACCATATTTGTTTGGTATATAGCAAACAAGTCGTGAAATCAGTCTATCACAGGTTGCCACATCCAACAAGTGACTGGTGCCTTTCAAGTGGAATTTGAAAGCAAACTTCTATTCCTAATCCTACATTATGGGAAACCATCTCCCATTGATA
AAGAGTATAATTGACTTTCTAGAAGCGAAATGTCTAACTTGGAGTGATGCTCATTCATCACAATAGCCTCAAATCTTGAGTTCTGAGCAATGAAACCCCTTAAATCCACATCTGGCTGGACCTCTGTTGGAACGGCAGTGGAGATGAAATCCCACTCACGATTGAATTGTATTTGTGTTGGGAATTTAGGGTGCTCAAAG
TCTACAATTTTCTTTTGTTAGTTTGTAGTTACAAGTACTATAAAAAGTTACTGTTTTATTCAAGTTTGTGGGTACACAGTTTCTGCAAAATAGATTTATGGGCTAGTATGAGTTTATAGTTTCTTATAATATAGATTGGCAAGATTTTTTGGAGTAATTGGGAAGCATATAGAGTCCAAATGGATTACACCAATCCCCAA
AAACTAATAGTTCAAGACTTTAGTGAGAAACTAGCCCTTAAACTAATATAATCACCAAAATGACTTCTCATATTT
Intron 7 GTAATTACTT ... CAATTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.89 | 174.9 | 0 | 49 |
| A2 | 12.97 | 161 | 2.6 | 24 |
| A3 | 16.86 | 147.9 | 1.8 | 30 |
| A4 | 16.52 | 161.7 | 3.8 | 32 |
| A5 | 20.77 | 99.2 | 0.4 | 26 |
| A6 | 20.51 | 422.4 | 0.8 | 109 |
| A7 | 15.79 | 496 | 3 | 93 |
| A8 | 17.11 | 373 | 0 | 77 |
| A9 | 17.1 | 441.3 | 0 | 91 |
| A10 | 15.91 | 348.7 | 0 | 66 |
>TRINITY_DN118547_c0_g1_i9 from sample A3 / Example spliced isoformAAATATCTTCCGTGCCCACATCTTCTCGTTTGTTTTCCCGGCCTGAAAACATTAGTGGGTTTTGATCTAAGAACTTTTAAGCAGCTGCAGCCACAATCAAGGTACCTGAAAGCCATGGCTGCTGCAACTGGCTCTGGGCTTCAGTTAGCTAGGGCTGCACTTTTCTCTTCTCAGTCAAATTCGGCGCCCATGACTGCCCG
CTCAGGAGTCTGTAATCTGACACCCATTATCTCATTTGCTTCCTCTCGAGGAACCCTTCTGCAATCCTCTTCTTTTCTCCCTTCTACTTTGCAGCTATCTAGGACCATTAAAACAGAGGCTGTTAAGCTCAGAAGAGGACCTACAGAGATCCGGGCTGTTGCCAATGATAACGGAGCGCCCTCTGGACTTTCCATTGATT
TGAGAGGAAAAAGAGCATTTATTGCTGGAATAGCGGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCCTGAAACGAGGCAAGTTTGATGAATCACGTGTGCTGCCGAATGGTTCTATGATGGAGATC
TCTAAGATTTATCCTCTGGATGCTATCTATGATACTCTCGAGGATGTTCCTGAAGATGTAAAAGCAAACAAGAGGTATGCGGGAGCTTCAAATTGGACAGTTCAGGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGA
GACATCAAGAAAGGGGTACCTTGCAGCTGTTTCAGCTTCAAGTTATTCCTTTGTGTCACTGCTGAAGCACTTTATACCTATAATGAATCCTGGCGGGTCGACGATATCTCTCACATATATTGCATCAGAAAGGATCATTCCGGGATATGGTGGAGGAATGAGTTCTGCAAAAGCTGCTCTCGAAAGTGACACTAGGGTTC
TTGCTTTTGAAGCTGGAAGACGCTACGGCGTAAGAGTGAATACAATTTCAGCAGGTCCCTTGAGAAGCAGAGCTGCAAGGGCCATTGGATTTATAGATACTATAATTGAATACTCAATGGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCCGATGAGATTGGGAACGCTGCAGCATTTTTAGCTTCACCATTGGCCTCT
GCAATAACTGGCACAGTTGCATATGTTGACAATGGGTTGCATGCTATGGGAGTTGGAGTGGATAGTCCAGCCTTTTCTGAACTTGCAATGCCACAAGCAGAAAAAAGCAAGACTCCAGCATGATACTATACCATATTTCTTTCGTATATAGTTAATGAGCAATCTATCACAGCTTGCCACATCTAACAAGTGTTCTGTGC
CTTTCAAGTGGAATGTGGGTAATCTCTAGTTACGATGTAGTTTTTTGATTTGATGCTTTAGTCCAGTGAGGCAGTTTGTTTGTTAGCATAAACCCTAAACCTTGAGCATGGGAAATGTAAGTAATTTTCCCGCAAAGAAAGGCTATTTAGAAAGCAATGGATTCATGGGGAAATTTTCTCGCCAAGAAAGGCTATCTAGA
AAGCAATGGATTCATGGAGAAATTTTATCGAGGTATAATCCTCTTTGTTCAGATTAATTTGAAGGCATCTTTGCATTTCTTCTCTATAGGTATGGCATAGAATAATGTTGCATCAGGCGGAGGGGTTTCATCTCCACTTAATTTGAAGAGACCGTTAAAGACATTATGGAGCAAGCAAAAGAAAAGTTGCCGTAGCCTGG
AGATTTGGTGTTCCACATTTTGTTTGTTTGGCCTATTTTTTGGAAAATATTATCAAGAGGTTTTGAATTGCTAAAACTAGGTTCAGGCAATCATTTGGATACTTTTTGCTGGAATTTAAAAAACAATAAATTTTATTAAAAACGAACACGAAATATTCTCGATATTTTGTACAAAATTTCCTACCGTTGTCTTACAGGGT
ACAAAATTTCCTTCCGCTGTCTTACAGGGTTTTAATAAAGCGGAGTTCTTATGTACCGAATCTAGAAGCTACTACAGATTGAATCTGC
>TRINITY_DN118547_c0_g1_i7 from sample A3 / Example unspliced isoform:AGCTTCAAATTGGACAGTTCAGgtaattacttttgtttaaataccttatgccatagatattatttcaagatgcatttggtcataaattaggatagacattgccttttgactttatttttatgattttggaaaatattctctgcacatttttgcatgatagagagatcgagcctttatatcccagggctaatattccaatt
gaaacaattcatagGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGAAAGGGGTACCTTGCAGCTGTTTCAGCTTCAAGTTATTCCTTTGTGTCACTGCTGAAGCACTTTATACCTATAATGAATCCT
GGCGGGTCGACGATATCTCTCACATATATTGCATCAGAAAGGATCATTCCGGGATATGGTGGAGGAATGAGTTCTGCAAAAGCTGCTCTCGAAAGTGACACTAGGGTTCTTGCTTTTGAAGCTGGAAGACGCTACGGCGTAAGAGTGAATACAATTTCAGCAGGTCCCTTGAGAAGCAGAGCTGCAAGGGCCATTGGATT
TATAGATACTATAATTGAATACTCAATGGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCCGATGAGATTGGGAACGCTGCAGCATTTTTAGCTTCACCATTGGCCTCTGCAATAACTGGCACAGTTGCATATGTTGACAATGGGTTGCAT
Intron 8 GTATTAAGTG ... TCTACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.6 | 12.4 | 3.6 | 21.7 |
| A2 | 49.58 | 17 | 10.1 | 16 |
| A3 | 59.42 | 13.1 | 2.4 | 18.2 |
| A4 | 53.37 | 8.1 | 3.9 | 8 |
| A5 | 49.7 | 11 | 14.1 | 10.5 |
| A6 | 57.23 | 17.2 | 1 | 20.8 |
| A7 | 55.04 | 27.9 | 11.6 | 31.6 |
| A8 | 57.99 | 24.9 | 4.6 | 32.8 |
| A9 | 53.53 | 29.2 | 8.2 | 30.6 |
| A10 | 58.35 | 25.6 | 6.5 | 34.5 |
>TRINITY_DN108504_c0_g1_i9 from sample A4 / Example spliced isoformAAGGATGTTCCTGAAGAGGAAAATATATTAAGCAGACAATTCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGATAAAAACAAACAAAAGGTATGCGGGAGCCTCAAATTGGATAGTTCAGGAAGTTGCAGAGTCTATAAAACAGGACTTTGGAAGCATCGATATTCTTGTGCACTCTCTTGCAAATGGTCCAGAGGTCA
GTAAACCTCTTCTTGAGACATCAAGAAATGGGTACCTTGCATCTGTTTCAGCCTCAAGTTATTCCTTTGTGTCATTGCTAAAGTACTTTATACCTATAATGAATCCTGGCGGGTCGACGATATCTCTCACATATATTGCATCAGAAAGGATCATTCCGGGATACGGTGGAGGAATGAGTTCTGCAAAAGCTGCTCTCGAA
AGTGACACTAGGGTTCTTGCTTTTGAAGCTGGAAGACGCTACGGCGTAAGAGTGAATACAATTTCAGCAGGCCCCTTGAGAAGCAGAGCTGCAAGGGCCATTGGATTTATAGATACTATAATTGAATACTCAATGGCAAACGCTCCCTTGCAAAAGGATTTGCTAGCCGATGAGATTGGGAACGCTGCAGCATTTTTAGC
TTCACCATTGGCCTCTGCAATAACTGGCACAGTTGCATATGTTGACAATGGGTTGCAT
>TRINITY_DN108504_c0_g1_i12 from sample A4 / Example unspliced isoform:AAGGATGTTCCTGAAGAGGAAAATATATTAAGCAGACAATTCTCAATCAAGCCTTCGTTTTTGTCAGATTTGGgtattaagtgaaataggttacctaaggggatgaaggccatttttatgctcttagtatcttttaagcaaattttcaaatctaatttatctggaaggacctagaatttggggcactaattaagttattc
tattctactacagATAAAAACAAACAAAAGGTATGCGGGAGCCTCAAATTGGATAGTTCAGGTAATTACTTTTGTTAAAATATTCTATGCTATAGCTATTATTTCAAGAG