sp|Q9MA56|PDP4_ARATH ----> PWWP domain-containing protein 4
Intron 1 GTAATTAATC ... ACCCAACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.17 | 33 | 53 | 25 |
| A2 | 73.68 | 10 | 44 | 12 |
| A3 | 55.28 | 36 | 57 | 32 |
| A4 | 53.33 | 35 | 56 | 24 |
| A5 | 66.04 | 9 | 24 | 11 |
| A6 | 63.97 | 256 | 571 | 338 |
| A7 | 60.91 | 188 | 384 | 202 |
| A8 | 57.27 | 191 | 306 | 206 |
| A9 | 60.42 | 188 | 364 | 210 |
| A10 | 63.43 | 130 | 309 | 142 |
>TRINITY_DN123342_c1_g1_i6 from sample A2 / Example spliced isoformTGGCGATTTGCCTGCGCTTTTAGGGTTTTTAGCAGCCATCTGAAGCCCTATATCGCCATCTGTTGAAGAGGAGAATAAATTTTGGACTGGTTGGCTTTTTACTTAATTTTCTGAAGCTAAGATATGGACGAGCAATATTCCTTAAGGCAACACATGCCATTACAGTATTACAGTGCAACACCTTATCGGACTGCGCAGAT
TCTGCCCGCCATTACTCATGGAACGTTTGAGCAGCCTCCCACTTCTTCATATTGTCATGCACCTGCTGTATCTTTATCTGCCCATCATAATCAATTGGCCTACGGCCAGCAGCAGGAGGAAGTTGAGATTTGCTGGGCTAACCAGATGCGAGGAATCGACCAGCAAGCTGTCGATTTCAGAAATCACAGCCTCCCCCTGG
CGAGAATCAAGAAAATAATGAAGTCAGACGAGCATGTTAAGATGATATCTGCAGAGGCCCCGATGGTTTTTGTCAAGGCGTGCGAAATGTTCATCAATGAGCTTACTCTTAGGGCCTGGAATCACACTCAAGAAACCAAGAGACGAACCCTGCACAAAAGCGATATAGCTGCGGCAATAACTAGAAGTGATATATTCGAT
TTTCTGATCGATATTTTGCCGAGGGACGAGCTGAAGGAGCATCAGCACTCTGCGTCTCGTGGAGTAATTGTTGGGGAACCCATGGATCCTGCTATTTATATGCAGCAGCCACGGTCTTCTGTGGTCTGTATGCAGAATATGTTGCAGTGGGGATATATGCACACAGACCAATCCAGGCCACCCAATTCTGGTTAAGAGAT
GGACCTGATCATGAGTTGCAGGTTCATGGTTGCATGTTCTGTTTTTATTATCAGAAATGGCTGTTTGGCTCTTTGTTTGGAAGCTGCCTGCCCTGC
>TRINITY_DN123342_c1_g1_i1 from sample A2 / Example unspliced isoform:TGGCGATTTGCCTGCGCTTTTAGGGTTTTTAGCAGCCATCTGAAGCCCTATATCGCCATCTGTTGAAGAGGAGAATAAATTTTGGACTGGTTGGCTTTTTACTTAATTTTCTGAAGCTAAGATATGGACGAGCAATATTCCTTAAGGCAACACATGCCATTACAGTATTACAGTGCAACACCTTATCGGACTGCGCAGAT
TCTGCCCGCCATTACTCATGGAACGTTTGAGCAGCCTCCCACTTCTTCATATTGTCATGCACCTGCTGTATCTTTATCTGCCCATCATAATCAATTGGCCTACGGCCAGCAGCAGGAGGAAGTTGAGATTTGCTGGGCTAACCAGATGCGAGGAATCGACCAGCAAGCTGTCGATTTCAGAAATCACAGCCTCCCCCTGG
CGAGAATCAAGAAAATAATGAAGTCAGACGAGCATGTTAAGATGATATCTGCAGAGGCCCCGATGGTTTTTGTCAAGGCGTGCGAAATGTTCATCAATGAGCTTACTCTTAGGGCCTGGAATCACACTCAAGAAACCAAGAGACGAACCCTGCACAAAAGCGATATAGCTGCGGCAATAACTAGAAGTGATATATTCGAT
TTTCTGATCGATATTTTGCCGAGGGACGAGCTGAAGGAGCATCAGgtaattaatcttggaaaccctaaatcttctctctcagttggaagcagcagctctaaccccggtggtgctaattctttaacttatcattatttacccaaccagCACTCTGCGTCTCGTGGAGTAATTGTTGGGGAACCCATGGATCCTGCTATTTA
TATGCAGCAGCCACGGTCTTCTGTGGTCTGTATGCAGAATATGTTGCAGTGGGGATATATGCACACAGACCAATCCAGGCCACCCAATTCTGGTTAAGAGATGGACCTGATCATGAGTTGCAGGTTCATGGTTGCATGTTCTGTTTTTATTATCAGAAATGGCTGTTTGGCTCTTTGTTTGGAAGCTGCCTGCCCTGC
Intron 2 GTATGGGCCG ... GATACCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.65 | 32 | 100 | 70 |
| A2 | 68.12 | 33 | 99 | 42 |
| A3 | 70.25 | 36 | 88 | 82 |
| A4 | 66.85 | 30 | 81 | 40 |
| A5 | 78.85 | 11 | 49 | 33 |
| A6 | 65.35 | 22 | 64 | 19 |
| A7 | 66.67 | 28 | 77 | 35 |
| A8 | 65.71 | 18 | 55 | 14 |
| A9 | 67.21 | 20 | 64 | 18 |
| A10 | 71.11 | 26 | 98 | 30 |
>TRINITY_DN134916_c0_g1_i8 from sample A1 / Example spliced isoformGCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTTGACCTGGCAACCCATTTATCATATTTGAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTCCGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAG
GGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATAGGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATC
AGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGCAAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTC
TGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCGAGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTC
TCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTATACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCA
ATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTCCACAAACTCCGATGATGCTGGCGCAGATGATATTTCG
GATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGTTCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGC
CACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAAACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCAC
AAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGAAGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGG
AGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCAAGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGA
TAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCCTTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCAT
CACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGCATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTT
TCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTCAATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTT
GCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTACCCAAGAGAAAAAAATCATAAGAATATGACAAGATTGT
CTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCCCATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTA
TGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTCTGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGT
TCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTAACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCT
ATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCACAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAA
TCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTTTGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGG
GTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTGAAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCAT
CAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAGCACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTA
GATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATATCACATCAGATGTTGTACCTTCTGATGCAATGCAATGA
TATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATTTTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAA
CCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGATTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACT
TCCACTCGCCAGATTATTTCACTGG
>TRINITY_DN134916_c0_g1_i3 from sample A1 / Example unspliced isoform:GCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGgtatgggccgaaatccttttaaatttgaatcgctgttcgtagaatttgtcattgtttcagttgagtgtatccaacactatggt
ttccctccggaacgagggcaggcggatgaggaaattggtggagaccccaactgggcacaatttacagggtcccagatccgaaaacggtgaagaaaagggaaaagaggataaacgatttagggtttcgggcgcagcagagggttcgatacccaagGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTC
CGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATA
GGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGC
AAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCG
AGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTAT
ACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTC
CACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGT
TCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAA
ACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGA
AGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCA
AGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCC
TTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGC
ATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTC
AATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTAC
CCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCC
CATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTC
TGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTA
ACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCA
CAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTT
TGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTG
AAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAG
CACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATAT
CACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATT
TTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGA
TTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGGTAAATTCCATAAGTTCCCAGTTTGAAGTTTTTAGTTCTGTCCTACCTTCATGATATGTTTACATGGTCAATTCTTGAGGTCATCCCCAAAGGATGGGGAGTTGGTACTTATGTTTTTCAGTTTGTGTTCAGTAATTCT
TCCAATTTGTTTCAAAAGAATGCCACTAATGGTTTTACGTTGTTACGATATATGATAATGTTTAACAACCATGCTTATATTTTGCAATGCTGGTTCAAAGTTTTAATAAATACATTTGACAAGCATGGATATACTTTCTATTGTTGGCCTAAATTACTTGAAGTTGCAACATACATAAAGTTTGGAGCAAACCTTTTTTC
TGAACTGCAGTCAGCGCTCTATTCTGTTGACTGTTATCGTACTTGGCAAGTAATACAGTTTTATTGTTACCTCTTTGATACGTATTTCTAATTACTTTTATTGAACAACTTGATTCTGAAGGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCT
TGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGGTAAGCTGTTATATCCATATCCGTGGCTAAGATGGATCTACACCAGTTTAATTTAAATCTAGCAAGATAAATAAGATGTTGATTCCTGTTTTCACGTTATGGTAAACTAATGTTCACCTTTGTTTTCAGTATTTTTAGTGTTGCTTATGGATGAGTGGAGACT
TGAAGTGCTGAAGATCTCTTTCCACTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCAAAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTACATGACTAGATT
GGTACATAAAATTTTATTGATGGTACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTTTGGTAACAGTTGTGATGTGGAAATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCCACTTTGTCATT
GTTCAAAGGAGTGAACTCGGCTTTGAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGTTATTCTAGCTCTCTAATTACTATTCAAACATACATACATGGCTGGAGATGAACAGTCGTATAGATAGAGATAGACATATATATAGAGATGCACACTAAGAGAAAATAACGATCATATAACAGGTGGA
AAACGCTGTTTCACACTTTTACTGTATACTTAATACTGGTGATTCGGTGAGTTGTACAAAATAATGTCAAAGTTAAATGTGGCATTCACAGGGTAGCACCACGTAACCATGTAGGCATATAACAAGTGGGTAGATTCACCAATGGGTAGATCGCACAGACATGTTACAGGTGATTATATAGATGGATAATATATAGACAT
TGAAATTCGCTTTGCCCAGCTAAAAAATCTCAACATTGTGATTTAAAT
Intron 3 GTAATTAATC ... TTATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.29 | 44 | 58 | 65 |
| A2 | 57.53 | 31 | 46 | 38 |
| A3 | 60.85 | 46 | 85 | 58 |
| A4 | 59.8 | 41 | 65 | 57 |
| A5 | 61.06 | 22 | 39 | 30 |
| A6 | 59.51 | 382 | 622 | 501 |
| A7 | 55.43 | 279 | 395 | 299 |
| A8 | 55.71 | 260 | 343 | 311 |
| A9 | 59.94 | 277 | 444 | 385 |
| A10 | 55.66 | 239 | 342 | 258 |
>TRINITY_DN123342_c1_g1_i3 from sample A2 / Example spliced isoformTTTAGGGTTTCAAGCAGCTATTTTAAGCCCCATTTCGCCATCTGTAGAAGAGCAACAGAGATTTTGGAATTGTCGGATTTCATTTCTAGGTTCTGATTATCTTTTGAAGCTATGGACCAGCAATTCTCAGTGCAACACATGGCCTTACAATATCACGGGGCAACGCCTTATCAGGCTGCGCAGATTCTTCCCCCCATTGG
TCATGGAACGTTTCAGCAGCCTCCCAATTCTTCATATGCTCATGCACCGGCTTTTTCTTTATCTGCTCATCATAATCAATTGGCCTACCAGCAGCAGCAGCAGGAAGCTCAGATTCCCTGGGCCAACCAGGTGCAGGGAATCGATCAAGCTGTCGATTTCAGAAATCACAGCCTCCCCCTGGCGAGAATCAAGAAAATAA
TGAAGTCGGACGAGCATGTCAGGATGATATCTGCAGAGGCTCCGATGGTTTTTGCCAAGGCTTGCGAGATGTTCATCAATGAACTTACTCTCAGGGCCTGGAATCAGACAGAAGAAACCAAGCGACGGACCCTGCAGAAAATCGATATAGCTGCGGCAATAACTAGAAGTGATATATTCGATTTTCTAATCGATATTTTG
CCGAGAGATGAGTTGAAGGAGGATCAGAATATGTCACGGCAGGGATAATATATGCACGCAGACTAATCAAGATCATCCAGTTCTGGTTAAAAGCAGCGCCTGATGATGAGTCGGCTCATGGCTGCATGCTCTTTTCTTTTATTATCAGAAATGGCTGTTCTTTTCTAAGCTGATTGCCCTGCGGCGGATCATCTGCCTCC
TGTTCTTTCTCCTCATTCTGTTTTCCAAGATTACTCTGCAAGTTTTCTTTTATGAATTCGATTCTGCGCTGTAAATATACTGTTTCTCTGCAACGAAAGCGCAGGTAGAAGAAGATTTAAACTGTTATATTTGTTTTAAGGTTTTCCGTAGTATTTCTGTAAATGGTTCAATTATCATTTATCCAGCTTTCATGGCTTTC
ATAGCTTCTATTCTCGAGTTTCCAGTTCAGAGATTTTACAGCGATAAAATCTAACCTGAGTTTATGATCTAAGTTCAACTTGGTTAAGCGCCATGTATAAATATTTTGGATTCCAGCTGGCTGGCATCGAAAAGACTTCATATCTGTTTTGATTCCCAATAGATAAGGTATTTACACCGAACTCCATCTTTGATGTATAT
AAATATATTATTGCTTGTGAAGCATTGATTTCTACATGATGTATATAAATATATTATTGCTTCAGTAAATTAATGTAATGTGAAGCGTTGATTTTTCCTGCGTACGTTTTTATTATTGTACGTTTTTATTATTGTATTGAAG
>TRINITY_DN123342_c1_g1_i4 from sample A2 / Example unspliced isoform:TTTAGGGTTTCAAGCAGCTATTTTAAGCCCCATTTCGCCATCTGTAGAAGAGCAACAGAGATTTTGGAATTGTCGGATTTCATTTCTAGGTTCTGATTATCTTTTGAAGCTATGGACCAGCAATTCTCAGTGCAACACATGGCCTTACAATATCACGGGGCAACGCCTTATCAGGCTGCGCAGATTCTTCCCCCCATTGG
TCATGGAACGTTTCAGCAGCCTCCCAATTCTTCATATGCTCATGCACCGGCTTTTTCTTTATCTGCTCATCATAATCAATTGGCCTACCAGCAGCAGCAGCAGGAAGCTCAGATTCCCTGGGCCAACCAGGTGCAGGGAATCGATCAAGCTGTCGATTTCAGAAATCACAGCCTCCCCCTGGCGAGAATCAAGAAAATAA
TGAAGTCGGACGAGCATGTCAGGATGATATCTGCAGAGGCTCCGATGGTTTTTGCCAAGGCTTGCGAGATGTTCATCAATGAACTTACTCTCAGGGCCTGGAATCAGACAGAAGAAACCAAGCGACGGACCCTGCAGAAAATCGATATAGCTGCGGCAATAACTAGAAGTGATATATTCGATTTTCTAATCGATATTTTG
CCGAGAGATGAGTTGAAGGAGGATCAGgtaattaatcttggaaaccctaaatcttctctctcagttggtgctaattctttccctaattattatttaccgaaccagcactctgcgcctggtggagtactgattgttaggaaagccatggatcctgctatttatatgcagAATATGTCACGGCAGGGATAATATATGCACGC
AGACTAATCAAGATCATCCAGTTCTGGTTAAAAGCAGCGCCTGATGATGAGTCGGCTCATGGCTGCATGCTCTTTTCTTTTATTATCAGAAATGGCTGTTCTTTTCTAAGCTGATTGCCCTGCGGCGGATCATCTGCCTCCTGTTCTTTCTCCTCATTCTGTTTTCCAAGATTACTCTGCAAGTTTTCTTTTATGAATTC
GATTCTGCGCTGTAAATATACTGTTTCTCTGCAACGAAAGCGCAGGTAGAAGAAGATTTAAACTGTTATATTTGTTTTAAGGTTTTCCGTAGTATTTCTGTAAATGGTTCAATTATCATTTATCCAGCTTTCATGGCTTTCATAGCTTCTATTCTCGAGTTTCCAGTTCAGAGATTTTACAGCGATAAAATCTAACCTGA
GTTTATGATCTAAGTTCAACTTGGTTAAGCGCCATGTATAAATATTTTGGATTCCAGCTGGCTGGCATCGAAAAGACTTCATATCTGTTTTGATTCCCAATAGATAAGGTATTTACACCGAACTCCATCTTTGATGTATATAAATATATTATTGCTTGTGAAGCATTGATTTCTACATGATGTATATAAATATATTATTG
CTTCAGTAAATTAATGTAATGTGAAGCGTTGATTTTTCCTGCGTACGTTTTTATTATTGTACGTTTTTATTATTGTATTGAAG
Intron 4 GCGGATGAGG ... GATACCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.63 | 32 | 17 | 70 |
| A2 | 56 | 33 | 13 | 42 |
| A3 | 69.49 | 36 | 11 | 82 |
| A4 | 57.14 | 30 | 14 | 40 |
| A5 | 75 | 11 | 6 | 33 |
| A6 | 46.34 | 22 | 8 | 19 |
| A7 | 55.56 | 28 | 9 | 35 |
| A8 | 43.75 | 18 | 3 | 14 |
| A9 | 47.37 | 20 | 4 | 18 |
| A10 | 53.57 | 26 | 17 | 30 |
>TRINITY_DN134916_c0_g1_i8 from sample A1 / Example spliced isoformGCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTTGACCTGGCAACCCATTTATCATATTTGAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTCCGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAG
GGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATAGGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATC
AGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGCAAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTC
TGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCGAGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTC
TCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTATACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCA
ATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTCCACAAACTCCGATGATGCTGGCGCAGATGATATTTCG
GATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGTTCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGC
CACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAAACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCAC
AAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGAAGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGG
AGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCAAGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGA
TAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCCTTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCAT
CACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGCATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTT
TCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTCAATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTT
GCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTACCCAAGAGAAAAAAATCATAAGAATATGACAAGATTGT
CTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCCCATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTA
TGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTCTGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGT
TCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTAACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCT
ATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCACAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAA
TCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTTTGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGG
GTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTGAAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCAT
CAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAGCACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTA
GATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATATCACATCAGATGTTGTACCTTCTGATGCAATGCAATGA
TATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATTTTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAA
CCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGATTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACT
TCCACTCGCCAGATTATTTCACTGG
>TRINITY_DN134916_c0_g1_i1 from sample A1 / Example unspliced isoform:GCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGgcggatgaggaaattggtggagaccccaactgggcacaatttacagggtcccagatccgaaaacggtgaagaaaagggaaaag
aggataaacgatttagggtttcgggcgcagcagagggttcgatacccaagGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTCCGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAG
GCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATAGGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAG
TATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGCAAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCA
TGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCGAGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTG
ACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTATACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATC
TGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTCCACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATG
AAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGTTCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGAT
ATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAAACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCA
CATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGAAGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTG
AAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCAAGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCA
GCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCCTTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACC
CAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGCATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATAC
TTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTCAATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTA
GATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTACCCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGA
TCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCCCATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCC
TTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTCTGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAG
CTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTAACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTC
TGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCACAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAA
TTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTTTGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAAT
AGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTGAAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGA
AACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAGCACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTA
ATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATATCACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGT
GTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATTTTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTT
ACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGATTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGG
Intron 5 GTAAGCTGTT ... TTGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 12 | 5 | 12.4 |
| A2 | 8.7 | 21 | 2 | 6.4 |
| A3 | 21.31 | 14.8 | 4 | 1.8 |
| A4 | 6.25 | 15 | 1 | 6.4 |
| A5 | 18.18 | 18 | 4 | 0 |
| A6 | 11.49 | 69.3 | 9 | 20.6 |
| A7 | 24.62 | 82.7 | 27 | 24.1 |
| A8 | 21.82 | 114.7 | 32 | 58.6 |
| A9 | 12.05 | 73 | 10 | 30.4 |
| A10 | 29.41 | 36 | 15 | 11.8 |
>TRINITY_DN134916_c0_g1_i2 from sample A1 / Example spliced isoformGCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGGTATGGGCCGAAATCCTTTTAAATTTGAATCGCTGTTCGTAGAATTTGTCATTGTTTCAGTTGAGTGTATCCAACACTATGGT
TTCCCTCCGGAACGAGGGCAGGCGGATGAGGAAATTGGTGGAGACCCCAACTGGGCACAATTTACAGGGTCCCAGATCCGAAAACGGTGAAGAAAAGGGAAAAGAGGATAAACGATTTAGGGTTTCGGGCGCAGCAGAGGGTTCGATACCCAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTC
CGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATA
GGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGC
AAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCG
AGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTAT
ACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTC
CACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGT
TCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAA
ACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGA
AGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCA
AGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCC
TTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGC
ATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTC
AATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTAC
CCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCC
CATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTC
TGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTA
ACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCA
CAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTT
TGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTG
AAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAG
CACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATAT
CACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATT
TTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGA
TTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCTTGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGTATTTTTAGTGTTGCTTATGGAT
GAGTGGAGACTTGAAGTGCTGAAGATCTCTTTCCACTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCAAAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTAC
ATGACTAGATTGGTACATAAAATTTTATTGATGGTACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTTTGGTAACAGTTGTGATGTGGAAATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCC
ACTTTGTCATTGTTCAAAGGAGTGAACTCGGCTTTGAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGTTATTCTAGCTCTCTAATTACTATTCAAACATACATACATGGCTGGAGATGAACAGTCGTATAGATAGAGATAGACATATATATAGAGATGCACACTAAGAGAAAATAACGATCATA
TAACAGGTGGAAAACGCTGTTTCACACTTTTACTGTATACTTAATACTGGTGATTCGGTGAGTTGTACAAAATAATGTCAAAGTTAAATGTGGCATTCACAGGGTAGCACCACGTAACCATGTAGGCATATAACAAGTGGGTAGATTCACCAATGGGTAGATCGCACAGACATGTTACAGGTGATTATATAGATGGATAA
TATATAGACATTGAAATTCGCTTTGCCCAGCTAAAAAATCTCAACATTGTGATTTAAAT
>TRINITY_DN134916_c0_g1_i3 from sample A1 / Example unspliced isoform:GCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGGTATGGGCCGAAATCCTTTTAAATTTGAATCGCTGTTCGTAGAATTTGTCATTGTTTCAGTTGAGTGTATCCAACACTATGGT
TTCCCTCCGGAACGAGGGCAGGCGGATGAGGAAATTGGTGGAGACCCCAACTGGGCACAATTTACAGGGTCCCAGATCCGAAAACGGTGAAGAAAAGGGAAAAGAGGATAAACGATTTAGGGTTTCGGGCGCAGCAGAGGGTTCGATACCCAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTC
CGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATA
GGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGC
AAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCG
AGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTAT
ACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTC
CACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGT
TCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAA
ACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGA
AGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCA
AGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCC
TTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGC
ATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTC
AATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTAC
CCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCC
CATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTC
TGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTA
ACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCA
CAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTT
TGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTG
AAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAG
CACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATAT
CACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATT
TTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGA
TTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGGTAAATTCCATAAGTTCCCAGTTTGAAGTTTTTAGTTCTGTCCTACCTTCATGATATGTTTACATGGTCAATTCTTGAGGTCATCCCCAAAGGATGGGGAGTTGGTACTTATGTTTTTCAGTTTGTGTTCAGTAATTCT
TCCAATTTGTTTCAAAAGAATGCCACTAATGGTTTTACGTTGTTACGATATATGATAATGTTTAACAACCATGCTTATATTTTGCAATGCTGGTTCAAAGTTTTAATAAATACATTTGACAAGCATGGATATACTTTCTATTGTTGGCCTAAATTACTTGAAGTTGCAACATACATAAAGTTTGGAGCAAACCTTTTTTC
TGAACTGCAGTCAGCGCTCTATTCTGTTGACTGTTATCGTACTTGGCAAGTAATACAGTTTTATTGTTACCTCTTTGATACGTATTTCTAATTACTTTTATTGAACAACTTGATTCTGAAGGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCT
TGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGgtaagctgttatatccatatccgtggctaagatggatctacaccagtttaatttaaatctagcaagataaataagatgttgattcctgttttcacgttatggtaaactaatgttcacctttgttttcagTATTTTTAGTGTTGCTTATGGATGAGTGGAGACT
TGAAGTGCTGAAGATCTCTTTCCACTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCAAAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTACATGACTAGATT
GGTACATAAAATTTTATTGATGGTACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTTTGGTAACAGTTGTGATGTGGAAATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCCACTTTGTCATT
GTTCAAAGGAGTGAACTCGGCTTTGAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGTTATTCTAGCTCTCTAATTACTATTCAAACATACATACATGGCTGGAGATGAACAGTCGTATAGATAGAGATAGACATATATATAGAGATGCACACTAAGAGAAAATAACGATCATATAACAGGTGGA
AAACGCTGTTTCACACTTTTACTGTATACTTAATACTGGTGATTCGGTGAGTTGTACAAAATAATGTCAAAGTTAAATGTGGCATTCACAGGGTAGCACCACGTAACCATGTAGGCATATAACAAGTGGGTAGATTCACCAATGGGTAGATCGCACAGACATGTTACAGGTGATTATATAGATGGATAATATATAGACAT
TGAAATTCGCTTTGCCCAGCTAAAAAATCTCAACATTGTGATTTAAAT
Intron 6 GTATGGGCCG ... ACGAGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.01 | 17 | 100 | 45 |
| A2 | 83.95 | 13 | 99 | 37 |
| A3 | 85.99 | 11 | 88 | 47 |
| A4 | 82.93 | 14 | 81 | 55 |
| A5 | 86.67 | 6 | 49 | 29 |
| A6 | 86.21 | 8 | 64 | 36 |
| A7 | 86.57 | 9 | 77 | 39 |
| A8 | 93.02 | 3 | 55 | 25 |
| A9 | 92.31 | 4 | 64 | 32 |
| A10 | 78.88 | 17 | 98 | 29 |
>TRINITY_DN134916_c0_g1_i1 from sample A1 / Example spliced isoformGCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGGCGGATGAGGAAATTGGTGGAGACCCCAACTGGGCACAATTTACAGGGTCCCAGATCCGAAAACGGTGAAGAAAAGGGAAAAG
AGGATAAACGATTTAGGGTTTCGGGCGCAGCAGAGGGTTCGATACCCAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTCCGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAG
GCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATAGGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAG
TATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGCAAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCA
TGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCGAGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTG
ACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTATACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATC
TGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTCCACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATG
AAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGTTCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGAT
ATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAAACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCA
CATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGAAGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTG
AAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCAAGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCA
GCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCCTTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACC
CAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGCATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATAC
TTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTCAATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTA
GATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTACCCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGA
TCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCCCATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCC
TTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTCTGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAG
CTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTAACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTC
TGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCACAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAA
TTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTTTGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAAT
AGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTGAAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGA
AACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAGCACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTA
ATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATATCACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGT
GTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATTTTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTT
ACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGATTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGG
>TRINITY_DN134916_c0_g1_i2 from sample A1 / Example unspliced isoform:GCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGgtatgggccgaaatccttttaaatttgaatcgctgttcgtagaatttgtcattgtttcagttgagtgtatccaacactatggt
ttccctccggaacgagggcagGCGGATGAGGAAATTGGTGGAGACCCCAACTGGGCACAATTTACAGGGTCCCAGATCCGAAAACGGTGAAGAAAAGGGAAAAGAGGATAAACGATTTAGGGTTTCGGGCGCAGCAGAGGGTTCGATACCCAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTC
CGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATA
GGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGC
AAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCG
AGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTAT
ACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTC
CACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGT
TCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAA
ACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGA
AGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCA
AGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCC
TTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGC
ATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTC
AATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTAC
CCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCC
CATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTC
TGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTA
ACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCA
CAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTT
TGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTG
AAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAG
CACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATAT
CACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATT
TTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGA
TTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCTTGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGTATTTTTAGTGTTGCTTATGGAT
GAGTGGAGACTTGAAGTGCTGAAGATCTCTTTCCACTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCAAAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTAC
ATGACTAGATTGGTACATAAAATTTTATTGATGGTACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTTTGGTAACAGTTGTGATGTGGAAATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCC
ACTTTGTCATTGTTCAAAGGAGTGAACTCGGCTTTGAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGTTATTCTAGCTCTCTAATTACTATTCAAACATACATACATGGCTGGAGATGAACAGTCGTATAGATAGAGATAGACATATATATAGAGATGCACACTAAGAGAAAATAACGATCATA
TAACAGGTGGAAAACGCTGTTTCACACTTTTACTGTATACTTAATACTGGTGATTCGGTGAGTTGTACAAAATAATGTCAAAGTTAAATGTGGCATTCACAGGGTAGCACCACGTAACCATGTAGGCATATAACAAGTGGGTAGATTCACCAATGGGTAGATCGCACAGACATGTTACAGGTGATTATATAGATGGATAA
TATATAGACATTGAAATTCGCTTTGCCCAGCTAAAAAATCTCAACATTGTGATTTAAAT
Intron 7 GTAAATTCCA ... GATTCTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.54 | 20 | 32 | 17.5 |
| A2 | 40.63 | 19 | 13 | 2.4 |
| A3 | 46.15 | 21 | 18 | 4.9 |
| A4 | 42.42 | 19 | 14 | 7.4 |
| A5 | 33.33 | 10 | 5 | 5.5 |
| A6 | 53.6 | 116 | 134 | 26.5 |
| A7 | 46.67 | 104 | 91 | 26.8 |
| A8 | 47.69 | 136 | 124 | 49.1 |
| A9 | 54.71 | 77 | 93 | 11.1 |
| A10 | 41.67 | 70 | 50 | 10.6 |
>TRINITY_DN134916_c0_g1_i2 from sample A1 / Example spliced isoformGCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGGTATGGGCCGAAATCCTTTTAAATTTGAATCGCTGTTCGTAGAATTTGTCATTGTTTCAGTTGAGTGTATCCAACACTATGGT
TTCCCTCCGGAACGAGGGCAGGCGGATGAGGAAATTGGTGGAGACCCCAACTGGGCACAATTTACAGGGTCCCAGATCCGAAAACGGTGAAGAAAAGGGAAAAGAGGATAAACGATTTAGGGTTTCGGGCGCAGCAGAGGGTTCGATACCCAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTC
CGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATA
GGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGC
AAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCG
AGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTAT
ACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTC
CACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGT
TCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAA
ACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGA
AGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCA
AGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCC
TTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGC
ATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTC
AATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTAC
CCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCC
CATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTC
TGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTA
ACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCA
CAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTT
TGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTG
AAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAG
CACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATAT
CACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATT
TTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGA
TTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCTTGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGTATTTTTAGTGTTGCTTATGGAT
GAGTGGAGACTTGAAGTGCTGAAGATCTCTTTCCACTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCAAAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTAC
ATGACTAGATTGGTACATAAAATTTTATTGATGGTACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTTTGGTAACAGTTGTGATGTGGAAATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCC
ACTTTGTCATTGTTCAAAGGAGTGAACTCGGCTTTGAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGTTATTCTAGCTCTCTAATTACTATTCAAACATACATACATGGCTGGAGATGAACAGTCGTATAGATAGAGATAGACATATATATAGAGATGCACACTAAGAGAAAATAACGATCATA
TAACAGGTGGAAAACGCTGTTTCACACTTTTACTGTATACTTAATACTGGTGATTCGGTGAGTTGTACAAAATAATGTCAAAGTTAAATGTGGCATTCACAGGGTAGCACCACGTAACCATGTAGGCATATAACAAGTGGGTAGATTCACCAATGGGTAGATCGCACAGACATGTTACAGGTGATTATATAGATGGATAA
TATATAGACATTGAAATTCGCTTTGCCCAGCTAAAAAATCTCAACATTGTGATTTAAAT
>TRINITY_DN134916_c0_g1_i3 from sample A1 / Example unspliced isoform:GCAGGAGAAAGCCGACGACGAAGATGGAAAAATAATTCGAATGCTTCGGGACCTACATGCGGCAATGAAGTATTCCGTTAGGCGTTCGACCTGGCAACCTATTTATCATATTTGAAGGTATGGGCCGAAATCCTTTTAAATTTGAATCGCTGTTCGTAGAATTTGTCATTGTTTCAGTTGAGTGTATCCAACACTATGGT
TTCCCTCCGGAACGAGGGCAGGCGGATGAGGAAATTGGTGGAGACCCCAACTGGGCACAATTTACAGGGTCCCAGATCCGAAAACGGTGAAGAAAAGGGAAAAGAGGATAAACGATTTAGGGTTTCGGGCGCAGCAGAGGGTTCGATACCCAAGGTTGAAGAAATGAGGGTTTCCATAGACGTCGATGCAGAGAATGTTC
CGTTACAGAGGTTGATGCGGAAGAGTGAGAAAACTAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCAGAGGCTAGTGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATA
GGGAAAATTTTGATCCGGAGTAAAGGCGGCGATCATCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGC
AAATGGAACTTCGAAATTTCGAGAAGGAGATATGGTCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCTCGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCG
AGCCAAATTATGTGCAAAAGTCGAAGCAATCTACGTCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTAT
ACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATTCAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTC
CACAAACTCCGATGATGCTGGCGCAGATGATATTTCGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGT
TCAAAAGGCAAGAGGGAATTCATGAACATCGCTCTGCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAA
ACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCCACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGA
AGCTGGGATGCCCAATGAAATTGGTTTAAAATCAGGGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCA
AGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCTGATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACACAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCC
TTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGCATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGC
ATTGGAAAATGGTGATAAAGACCTTCATGAAAGTGTTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATACTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTC
AATTGGATACTGAAACCAAGAAGACTGCTAAGGAGTTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTAC
CCAAGAGAAAAAAATCATAAGAATATGACAAGATTGTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCC
CATGTTGTCTGATCAATCAAAAGGTGATGAGTCCCTATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTC
TGACTTCATTGTCATCTTTGGAGGTATCCAAAAATGTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTA
ACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGCCTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCA
CAAATTATCAATCCTTTCAAGAGAGGATTCAAAAGAATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTT
TGGATGTTTCAGGAACAAGAATTTATTTTAATTCAGGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTG
AAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTCATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAGCTGGGAAATAG
CACTCTAAAAGAAACTGTCCGTGTAACCTTTCAATTAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATAT
CACATCAGATGTTGTACCTTCTGATGCAATGCAATGATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATT
TTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAAAACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGA
TTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTACTTCCACTCGCCAGATTATTTCACTGgtaaattccataagttcccagtttgaagtttttagttctgtcctaccttcatgatatgtttacatggtcaattcttgaggtcatccccaaaggatggggagttggtacttatgtttttcagtttgtgttcagtaattct
tccaatttgtttcaaaagaatgccactaatggttttacgttgttacgatatatgataatgtttaacaaccatgcttatattttgcaatgctggttcaaagttttaataaatacatttgacaagcatggatatactttctattgttggcctaaattacttgaagttgcaacatacataaagtttggagcaaaccttttttc
tgaactgcagtcagcgctctattctgttgactgttatcgtacttggcaagtaatacagttttattgttacctctttgatacgtatttctaattacttttattgaacaacttgattctgaagGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCT
TGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGGTAAGCTGTTATATCCATATCCGTGGCTAAGATGGATCTACACCAGTTTAATTTAAATCTAGCAAGATAAATAAGATGTTGATTCCTGTTTTCACGTTATGGTAAACTAATGTTCACCTTTGTTTTCAGTATTTTTAGTGTTGCTTATGGATGAGTGGAGACT
TGAAGTGCTGAAGATCTCTTTCCACTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCAAAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTACATGACTAGATT
GGTACATAAAATTTTATTGATGGTACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTTTGGTAACAGTTGTGATGTGGAAATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCCACTTTGTCATT
GTTCAAAGGAGTGAACTCGGCTTTGAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGTTATTCTAGCTCTCTAATTACTATTCAAACATACATACATGGCTGGAGATGAACAGTCGTATAGATAGAGATAGACATATATATAGAGATGCACACTAAGAGAAAATAACGATCATATAACAGGTGGA
AAACGCTGTTTCACACTTTTACTGTATACTTAATACTGGTGATTCGGTGAGTTGTACAAAATAATGTCAAAGTTAAATGTGGCATTCACAGGGTAGCACCACGTAACCATGTAGGCATATAACAAGTGGGTAGATTCACCAATGGGTAGATCGCACAGACATGTTACAGGTGATTATATAGATGGATAATATATAGACAT
TGAAATTCGCTTTGCCCAGCTAAAAAATCTCAACATTGTGATTTAAAT
Intron 8 GTAAGCTGTT ... TTGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.19 | 12 | 5 | 14 |
| A2 | 17.65 | 21 | 2 | 7 |
| A3 | 19.64 | 14.3 | 5 | 2 |
| A4 | 18.92 | 15 | 1 | 6 |
| A5 | 10 | 18 | 4 | 0 |
| A6 | 18.67 | 69.7 | 9 | 23 |
| A7 | 26.13 | 82 | 28 | 30 |
| A8 | 28.78 | 116.3 | 31 | 63 |
| A9 | 22.34 | 73 | 9 | 33 |
| A10 | 28.71 | 36 | 16 | 13 |
>TRINITY_DN48413_c1_g1_i1 from sample A10 / Example spliced isoformAGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCGGAGGCTAGGGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATAGGGAAAATTTTGATCCGGAGTAAAGGCGGAGATCA
TCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGCAAATGGAACCTCGAAATTTCGAGAAGGAGATATGG
TCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCACGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCGAGCCAAATTATGTGCAAAAGTCGAAGCAATCTACG
TCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTATACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATT
CAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTCCACAAACTCCGATGATGCTGGCGCAGATGATATTT
CGGATGAACTTGAGCTTCAACCTGAAGTTGTCTGCAGGGACTCTACAATTGAACCTCCTTCAGTAGATGAAAAGAAAGAAAGTCCAAGGCATGTTAAAGTGAAGTATCTAGCTAAGGGTTCTAGTTTGCCTGAGAAAACTGATAAAAAGAAAGAGAGGTACTCGTTCAAAAGGCAAGAGGGAATTCATGAACATCGCTCT
GCCACAAGTAGTGATACTCTCATGAATTATCTGGTGCAGGCAAATGGTCCTCAAATATTAGAAGCTGATATAAAAATGCCAGAAGGAGGATGTTTGACAGATGATGACATCAATAAGTATGTATTTAAAAAAAGAATTCACACTGGAGAAGCTAAGCTTGTTGAAACAAAAGAAGATATGAACCAGCTAAAGAAGAGCCC
ACAAAGAGGGAGAGGTTGTATTGGAGAGGCTCAAGCAAGAAAAAAGGAAGTTGCAAAGAAGGCTTCTCACATGGGACTTCTGGACAGGCAGAATGATTTGGACAAGTCTGTGCTTGCAAGGAAACCGGGTGAAATAGAAGAGCTGCATGAAATTCATATGTCTGAAGCTGGGATGCCCAATGAAATTGGTTTAAAATCAG
GGAGGATTCGGAAGTCAGACAATTTATTTTCCACAAAATGTTTGGTTGGAAGTTCTGTGTCTCGAGCTGAAGGTGGGAAGATTTCAACCAAAGCTTCTCAGAAGAAGAATGGGAAAAAAGTGGTCATGAGTCCAAACAGTTCTACTGACAATGCTATTTGTGGCAAGACTCTTGAAGCTCAAGGGGAAGTAATTATTGCT
GATAAATCATGTGAAGAAAAGCAACAGATGGGTCCAGTGGCAATGGTTGTTGATGAAATAGGTCTTCCAGCGAATTTCTTACAAGCAGAAGGCAGTGAAACTATTGATACATTAGATGAACTACTCAGAGTGCATAAAAATTTGGTGGGTGCTGAGAAGGAATCCTTCTCAGCAAATGGTGTGCAACAGGGGAAGGGAGC
ATCACTTGCAGCTAAAACGACTGAAAAGTCTGATTTTGGTGCTTTGGTCAGGGTATGCACTTCAATACCCAGAGACTCTTCTTTGAATGTGCATCCTTCAGCCTCTAAACCTGTGTCTTCGACTGTTACAGAGTGTCAGGAAACTGAAAAGAATGTGGGATGTGCATTGGAAAATGGTGATAAAGACCTTCATGAAAGTG
TTTCTCTCTCCAACCACTCCAGTAAAACCCAAGTATTGAATTCAGTTGAAATGGATGAACCAGGAATATTTAGATCTCATAAGCCAGATGATCAAATATCTGGGGGATTGGAGAATAGCCCTTGTGAAGGTTTCCTGGATATACAAGGGAAGGTTGATGACTGTCAATTGGATACTGAAACCAAGAAGACTGCTAAGGAG
TTGCTAGTATCCTCATCCGATATTGGTGAAACTGATGTTCTACCAAGTTCAGAGATGAGGGCCAGTTTAGATCATGCAGTTATTAAGAAAACAAAAGGCTTTAAGAGACTTGTGAAATTTGCAAAATCTTCAGGTTTGCAAGATACCCCTGGTAGTAGGAGTTACCCAAGAGAAAAAAATCATAAGAATATGACAAGATT
GTCTGATGAAATAGAGCCAACTGAGAAAAGGCGTAAGGTTTCTGAGATTGTGGAAAGTGTTGCTGAAGATCCTAAGCATGCAAGAACGGGTACAGCTGTGGTCAATTCTGCTTCTCATAATCACAGAAGGGCTGCATTGACAGAAGATGATAAAGGATGCTCCCCCATGTTGTCTGATCAATCAAAAGGTGATGAGTCCC
TATGCAGAGAAGTGCATTCTGAAAATTCTGGATCTCTTCTTTGTCCACTTATGAATGATTTTCTATCCCTTGCATTGGATCCTTTTTATGGGATTGAAAGGGACTGTCCTTTAAAGGTATCTCATTTCTTCCTAAAGTTCAGATCTCTGGTTTATCGGAAAAGTCTGACTTCATTGTCATCTTTGGAGGTATCCAAAAAT
GTTCAATCATTACATGAGGTCAGTGATGATCAGGAGACTAAAAACAGAGATGTTAGACAGGAGTCTGAGCTCTTGTTACCAATTCCAGAATCAAAGGATCCTAATGTCAAGGATGCCTTGGCTGATGAAAATGGCAATTCAGAACTAAATGAAGTTGCTCCCCTAACAAATTCCAAAGTGCAAAATTCTATGCCTCGGGC
CTATAAAAGTGGCAGAAGTCAAGGTCTTGAGGCAAAGGAAAACAGGAAACGGAAGTTGGATGTGCAGTCTGATGGTTCTGGTTCTGGTTCTTTGAAAAGGTTAAGGAAACTGAAAGATTTGGATTACATACCGTCAAGGAAGTCTCATTTAAAACCTAGTGTCCACAAATTATCAATCCTTTCAAGAGAGGATTCAAAAG
AATCAGTGCAGGAGCAGATAAAGCCTAGGAAATCCTCCTTTGAGAGGTCATCTGATTCATCTAAAGCAATTGAAGGACCGATGGCACTTTGCATGAAATTTCCTCAGGGATTTGCATTACCTTCTGTAGTGCAGCTGAAAGTAAAGTTTGCACGCTTTGGGCCTTTGGATGTTTCAGGAACAAGAATTTATTTTAATTCA
GGGTCTGCTCAGGTTGTGTTTAAACACAGCTCTGATGCAGAAACAGCCTATGATTATGCTACAGAGAATAGCTTGTTCGGTCAACCAGATGTCAGCTTTCGCCTAAAACAGATCTTTCAACCAAAGAATGAAGCTCCAGTATTGCAGAGCAAAAACGAGTCATTGAAATTGCCAAGAGTACAGATTGAAGAAGGCTCTTC
ATCAGTTCCAGCTGTAACACAAGAAGAGATGGCTCCCCCCAGATCATTGGATAGACACGGTGTTCCAGAAACACCAGTTGAGAGTACTCCTAAGTCCACACTTCAATCACGACCTGTGGGTCAATTGAAGTCCTGCTTAAAGAAGGCCGATGAACTGGGAAATAGCACTCTAAAAGAAACTGTCCGTGTAACCTTTCAAT
TAGATAGTGAGGAACTAATTCCTACAGTGGTGACTGCCATGGATGAAGATTCTCAAAAAGAAAATGTTAATCTACCTATATCTACATCTCTTCCTCTTGAGAGTAATGCAATTGTCAATCCACTTGTTGAGAATGATGCCACAAAATCTGCTCCTCCAGACATATCACATCAGATGTTGTACCTTCTGATGCAATGCAAT
GATATAGTGAACAATATTAGTTCTTCTTTGGGATATGTACCATTATATGAACTATGAATTCATAAGGGTGTTACTTTGTGTTCCATTATCCAATCTTCAGGGGTTGTATGTTTCCTCATAGTGGCCTAGACACTTCCAGGGTCTTTGTCGAGTACAACACTCATTTTGTTGCTTGTAAGTGCCCCTAAGGTTTGACCAAA
AACCAGGAATGATGCTTCAATGCCTGAATCATGGTTTACTGAAGAAGTGGCAGCAGGGTATCCCATTTTACCTGCACTTGTTTTCTTCTTTCCATTTATTCTCTTCCAGACATAGCTTTGTGGATATGTGATTACTCCTTGACCACCTACATGTTTTGGAGTTGATTGTTGTGCAAGTTAGAATGCAGATCGGTCTTCTA
CTTCCACTCGCCAGATTATTTCACTGGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCTTGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGTATTTTTAGTGTTGCTTACGGATGAGTGGAGACTTGAAGTGCTGAAGATCTCTTTCCA
CTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCAAAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTACATGACTAAATTGGTACATAAAATTTTATTGATGTT
ACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTTTGGTAACAGTTGTGATGTGGAGATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCCACTTTGTCATTGTTCAAAGGAGTGAACTCGGCTTT
GAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGT
>TRINITY_DN48413_c1_g1_i4 from sample A10 / Example unspliced isoform:AGGGTTTCTGTAGATGTCAATATGCTTGAAAGCGAGAGTATGATTGGCGGGGAAATAAAGCCTCCGGAGGCTAGGGTTATGGAGAATAATAAAGGCGGGGTCGATATGCCTAGCTTGCAATCGTCTTGTTCAGGCGCCGATGATGAGGAGGACAATATTCCCATAGGGAAAATTTTGATCCGGAGTAAAGGCGGAGATCA
TCAGAAGATACAACAGAAAAATGTTATAAACATGGATGATATTGATGATAATACTCCTTTAAAGAACAGTATTGCTATCAAAGAGGGCAAGATTTTAAGGAAAAGTATTGCTCTCAAAGAGGGCAAGAGCAGAGATAAAGTTGTTAAGGACAGTGACTGTGATGCAAATGGAACCTCGAAATTTCGAGAAGGAGATATGG
TCTGGGCAAAGGTGAAATCTCATCCGTGGTGGCCGGGGCAGGTTTACAATCCGGCATTTGCCTCGGCCATGGCACGCAGCAAAAGGAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATTGAATCTGATCTGGTGCCGTTCGAGCCAAATTATGTGCAAAAGTCGAAGCAATCTACG
TCTCGCACTTTCACTAAAGCGGTGGAGGAGTCTGTTGATGAGTTGGGAAGGCGAGCTGCCCTGGGCTTGACGTGTCCGTGCCGCAATTCTAGCTATTTCAAGCCAGCGAAGGTGAAGGGCTATGTAATGGTCGACATAGCAGGCTACGTGACGCCGGGGGTGTATACAGAGAGGCAAATTGAGGGGGCGAGGAATGAATT
CAATCCCGAGAACATGCTTTCTTTCGCTAGGCGTATGGCTGTGTCACCTTGGAGTACAGAAGACCAATCTGTTTCCGGGATAAAATGTGTTGCTGAAGTACTTGCATACCGAGCTGCGAATGTGACTTCCGGGGGCAAGGATTATCCAGAAGAGCTGAGGATTTCCACAAACTCCGATGATGCTGGCGCAGATGATATTT
CGGATGAACTTGAGCTTCAACCTGAAGGAATACAAAGTTCTTTGTCTGAGCCCATTTTTTAATGCCGACATTCTATTGCTATTGAAAGCTCCATTATTCCCAGCCTTGTAGAACTGCAAGGCTTCAATTTGGAAGGTATCAAGgtaagctgttatatccatatccgtggctaagatggatctacaccagtttaatttaaa
tctagcaagataaataagatgttgattcctgttttcacgttatggtaactaatgttcacctttgttttcagTATTTTTAGTGTTGCTTACGGATGAGTGGAGACTTGAAGTGCTGAAGATCTCTTTCCACTTGGGCTGTAGAGCTTCTCACCTCTCTCGGTCAATTATGGGTGGCAGTCATTGATTGTAAATCCCTGTCA
AAAGCTATATTTGCACAACTTGAAGGTTAAGACAGTAGAACTAGCAATTTTTTCAGCAGCAGTTAGCTTTACTTTTTGTTGCCTATGTAAGTACATGACTAAATTGGTACATAAAATTTTATTGATGTTACTAGTGGTATCTACAAGTTATTTTTGACCATCCCAGATTGTCTTGAAACACCGGTTGATCAGGTAATCTT
TGGTAACAGTTGTGATGTGGAGATCATATATTAGCTAAATTCAAAAACCTGTACGAAGTGTGGAGGAAAATCAATGGTAGGGTCATGGACTTCCACTTTGTCATTGTTCAAAGGAGTGAACTCGGCTTTGAATTTTTTATAAGTTGCTTTTTGTTTGATGATGGAAAATGTCTTTGGT
Intron 9 GTAAATTCTC ... CCTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.46 | 718 | 4 | 208 |
| A2 | 23.58 | 684 | 0 | 211 |
| A3 | 20.91 | 609 | 2 | 161 |
| A4 | 21.52 | 434 | 0 | 119 |
| A5 | 21.83 | 197 | 0 | 55 |
| A6 | 24.39 | 3261 | 3 | 1052 |
| A7 | 26.14 | 4066 | 2 | 1439 |
| A8 | 23.94 | 5938 | 0 | 1869 |
| A9 | 24.16 | 4617 | 0 | 1471 |
| A10 | 23.48 | 2995 | 0 | 919 |
>TRINITY_DN45040_c0_g3_i3 from sample A6 / Example spliced isoformACTAGGCATTCTTCAAATATAGAAGGATATTTTATAAGACAACGGCCGATCTAAGTGCGGCTATTGAATAGTGTTTTAAAGATTTTCAAACCCTAGCTAAATTCAAACCCGCGCCGCTTTAAGTTCGGGAGGAAGGAAGTAGGGTTTTACCTCTTAAACCCACGAAGTTGGCGATACAGCTTCTCTAAGATCATATTGGG
CGACCATTACATGATTACGAAGATTATTACAGGCAGTCGCAGAAGCTGCTGTGGTTTTGTTCTCATACTACGCGGAGCTTTTCAGTTCGGCGGTTGATTCGCTTTCACACTTTCAAATGGCCTTCTGGGGTGTTGAAGTGAAATGTGGCAAACCTGTTACTCTTAATTGTGATGGGGAGAAGGGGAGACTTCGCCTTGCC
CAGGCCACATTAGGGTTTGATTCCACTTCTTCCACAAAGAAGACTGTTGTCCAGTGTAATGTTGGTGATCGACCTGGTGTCCTCTTATGCTCCTTGTTACCTGGGAGGAAAGAGACATGTTCCTTAAATCTTATCTTTGACGAAGATGAAGAAGTCGTTTTCTCAGTTTTAGGACCTACTAGTGTACACCTTACGGGCTA
CTACATGCCTGTAAATGAGGCAAAAGGACCTTATGATTCGGATACATCTGGTGAAGATATAACTGGTGATAGTGAGGATTTTAGTGATAACACCACCGATGATGACTATGAAGAGGATTTTATTGACGATGACGACATAATGCTTCGTCCACGAATATCAAATTGTGGTGTTAAGATAGAGGAGATCGAGGATGAAGATC
TAGAGGAGCAAACCAAGGAAGTTGTGAAAAAGAAAAAGAAGAAGAAGGTCCTAGTTGGGACTGAAGAGGAGTCAGGCAGCAAACCTGCTGAGGGTGGCACGAAAAATGAATCAGATAAGCAACTTTCTGAAGAAGAGAATCAAGGTGTATCTGAAAGTGAAGATGAAGATGGATTTCCCATGCCCACAAAAAGGAAGAAC
AGGGAAAATGGTCAAACAGAGCCACCAAAGAAAAAACAAATGATAGATGATGATGGTGCGTCAAGTGATCCTACTGAGCATGCAGCTAAAGATACACCAGATGAGACTAAGAAATCCAAGAAGAAAAAGAAAAAGGTAAAAAACAAAAACAAGAAGGATGATGCTAAAGAAATCGAAGTTACCAATGGAACTCCTGAAAA
GGTCATTGATGATGCAGTGGAGAAGAGTGATGAACCGTTGCAAGTGAAGGAACACGGTCATAATGTCAGAACTTTCCCCAATGGTCTTGTGATTGAGGAACTGTCAATGGGGAAGCCTGATGGAAGGAAGGCTGTTCCAGGAAATAAGGTGTCTATGTATTATATTGGCAAGTTGAAGAAGAATGGGAAAATCTTTGACT
CGAATATTGGTCGCAAGCCATTCCAATTCCGCTTAGGTGTAGGAGAAGTGATAAGTGGATGGGATGTAGGTGTTAAGGGAATGCGTGTTGGTGACAAACGGAGACTGACTATACCTCCAGCAATGGGGTATGGAGCAAAGGGAGCTGGAGAAATACCAGGAAATGCCTGGTTAGTTTTTGATGTGGAGTTGGTTAATGTG
AAGTGAAAGTCTTTGATTGTGTTACCAAGTGAATTATAGTATAATTGGCAATTTTGATGATTGGCGGCATCATAAGGTCTGTTTGTTGAGCGATTTTTTGAGTCATTCTTTAATTCTGCCTGTATTATTAGCGTTAGACATTCTTTTATTCCGCTGTATTATTAGCGTGAGATATGTCATGGTTTATGTTTTCTAAAATG
CCACATTACGAATGAAGACAATTCAACGTGGGCTCGGCTGTTCTAGTTGTATATCTCTCTTCTGTCAAGGGTACAACCCAAATTTATATGTAAGAATGTTTTATGATTAGGTTGCTTTTATGATTTCCTTCAATTCACTACATTTAGTGAGTATATAAGTAACATGTAAATTGTGTTAGCATTTCCCCACAGTGCATGGT
TAGATAGTATGCAATTTTGTTTCAATTTTGATGTGCAAGTCATGGTAGCATTTACAGAGCTGCACTCACATACTCACAAGAAAATTAGAACCGATAGGAAATGTAATGATAGTATATTGTATATTGATTTGGGGTCAAGTTAGCCTGAAGTATGGGGTGAAGTAAATGCCAATTGATATTTTGCTTAGTATTGTCTGG
>TRINITY_DN45040_c0_g3_i5 from sample A6 / Example unspliced isoform:ATAACATTGTGGCTTTTGATTTTGTCCCCAGGTGTAGGAGAAGTGATAAGTGGATGGGATGTAGGTGTTAAGGgtaaattctctactatgccttatcttttgcaaccaagttagtgtggagtactttgtcatagtcatgaggtcttttatcttaccttatttcgtgtcctttgtcagGAATGCGTGTTGGTGACAAACGG
AGACTGACTATACCTCCAGCAATGGGGTATGGAGCAAAGGGAGCTGGAGAAATACCAGGAAATGCCTGGTTAGTTTTTGATGTGGAGTTGGTTAATGTGAAGTGAAAGTCTTTGATTGTGTTACCAAGTGAATTATAGTATAATTGGCAATTTTGATGATTGGCGGCATCATAAGGTCTGTTTGTTGAGCGATTTTTTGA
GTCATTCTTTAATTCTGCCTGTATTATTAGCGTTAGACATTCTTTTATTCCGCTGTATTATTAGCGTGAGATATGTCATGGTTTATGTTTTCTAAAATGCCACATTACGAATGAAGACAATTCAACGTGGGCTCGGCTGTTCTAGTTGTATATCTCTCTTCTGTCAAGGGTACAACCCAAATTTATATGTAAGAATGTTT
TATGATTAGGTTGCTTTTATGATTTCCTTCAATTCACTACATTTAGTGAGTATATAAGTAACATGTAAATTGTGTTAGCATTTCCCCACAGTGCATGGTTAGATAGTATGCAATTTTGTTTCAATTTTGATGTGCAAGTCATGGTAGCATTTACAGAGCTGCACTCACATACTCACAAGAAAATTAGAACCGATAGGAAA
TGTAATGATAGTATATTGTATATTGATTTGGGGTCAAGTTAGCCTGAAGTATGGGGTGAAGTAAATGCCAATTGATATTTTGCTTAGTATTGTCTGG