sp|Q5YLB4|GYRB_NICBE ----> DNA gyrase subunit B, chloroplastic/mitochondrial
Intron 1 GTATGTCTTA ... CATGTATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.6 | 35 | 1 | 8 |
| A2 | 17.65 | 28 | 3 | 6 |
| A3 | 15.38 | 22 | 3 | 4 |
| A4 | 17.5 | 33 | 2 | 7 |
| A5 | 0 | 9 | 0 | 0 |
| A6 | 15.63 | 27 | 0 | 5 |
| A7 | 17.11 | 63 | 3 | 13 |
| A8 | 19.54 | 70 | 7 | 17 |
| A9 | 16.44 | 61 | 2 | 12 |
| A10 | 17.05 | 73 | 0 | 15 |
>TRINITY_DN100688_c1_g2_i2 from sample A4 / Example spliced isoformTTTGATTATCGGAGGTATTCCCGGTGCTTGGAGTTTGCTCAGGGAAAACGAGGTATCAGTGATCTGGGTATCCAGTATCATCTTTGCAGTAGCAGCAGGCGGTTCCGGGTGCCTTATTTACAGGCAAATGTTTCACAGTCTTCCATCACAGCCAGAAGAGCATGCACCTTCAGAAGGATTACAAATGCCATACCTGCAAG
ATATTCAACAACCATACGAGCTTTTATGTCATCAACTATTGCCACAGAACGTTCATCTGATACAGCTGCTGCAAAATCTTATGATGCTGGACAGATTCAGGTTTTGGAAGGGCTAGACCCAGTACGAAAGCGGCCAGGGATGTACATTGGAAGCACTGGATCTCGTGGTCTCCATCATTTGGTTTATGAAGTTTTGGACA
ATGCCATTGATGAGGCTCAAGCTGGGTTTGCCACAAGCATAGATGTTATTCTCTTCCTTGATGGGTCTGTTAGCATCACGGATGATGGTCGAGGGATTCCCACAGATTTACATCCTGTTACACACAAGTCTGCTTTAGAGACTGTTTTGACGGTGTTGCATGCTGGAGGCAAGTTTGGTGGGGAAAGCAGTGGTTATGAT
GTTTCTGGAGGACTGCATGGGGTTGGTGTTTCTGTAGTGAATGCTTTGTCTGAGAAATTGGAGGTGACAGTCTGGCGTGATGGAAAGGAATGGGATCAAACCTTTGTGCGTGGAAAGCCTGTGACTGAACTCACCTCTCTTGAAATTCCTGGTGAATCTAAATCTCGCCAAGGAACACGTGTAAGGTTTTGGCCTGATAA
GGAAGTCTTCATAACAACGACAAAGTTTGACTATAACACAATAGCTGGGCGTGTCAGAGAGCTTGCATTTCTGAACCCTCAGGTAAAGATTACCTTGAAGGAGGAGAATGAAGATGCAGCGAATGTAACATGTAATGAATATCACTATGCCGGGGGCTTAGTCGAATATGTCTGTTGGTTGAACCGTGACAAGGTGGCTA
TTCATGAACCTATTTCCTTCAAGTCGGAAACAGATGGAGTCATTGTTGACATAGCCCTCCAGTGGTGCTCTGATGCATATACAGACACCTTGTTGGGATATGCAAACAGTATCCGAACAAGTGATGGAGGTTCTCATATGGATGGTGTGAAATCTGCATTGACCAGAACACTTAATAGCCTTGGAAGGAAGTCAAATCTT
ATCAAGGAGAAGGATGAGAACCTGAGTGGTGAGCATGTGAGGGAAGGGTTGACAGGAATAATTTCAGTCAAAGTTCCACAACCAGAGTTTGAGGGCCAAACAAAAACAAGGTTAGGTAATCCAGAGGTGAGGAGGATCGTGGACCAAGCTGTTCAGGAAAATCTTACAGAGTATTTAGAATGTAATCCTCGAGTTCTAGA
ATCCATTCTCTCAAAGGCTTTGAATGCCTACAAGGCAGCTATGGCAGCAAAAAAGGCAAGAGAATTGGTACGAAGAAAAAGCGTTTTAAGGCCCTCTGCACTTCCCGGAAAGCTTGCTGATTGCTCTGCCTCTGATCCTCGTGAAGCTGAGATTTTTATAGTTGAAGGAGAGTCAGCAGGTGGTAGTGCAAAACAAGGAC
GAGATAGGCGATTTCAGGCTATCTTACCTCTGCGCGGTAAGATATTGAATGTTGAACGAAAGGATGAAGCAGCTATGTATAAAAATGAAGAAATTCAAAATCTCATCCTTGGATTAGGACTTGGGTTGAAGGGTGAGGATTTCAACAAAGATGCTTTACGATATCACAAGATCATCATACTTACAGATGCTGATGTAGAT
GGTGCTCATATTCGCACTCTTCTATTAACTTTTTTTTTCAGATATCAGAAAGCTCTTTTTGAGGAAGGTAACATTTATGTAGGAGTTCCACCACTATACAAGGTTGAGAGGGGTAAGCAAGCTCATTACTGTTTTGATGATGATAATTTAAAGGAATTGCAAAAGTCTTTTCCGTCAAATGCATCATATAACATTCAGCG
TTTCAAAGGATTAGGGGAGATGATGCCTTTACAATTATGGGAAACAACCTTGGATCCAGCAACAAGGAAGCTGAAGCAACTAACAGTGGAAGATGCTGCAGAAGCAAATATGGTTTTCTCTTTATTAATGGGAAATCAGGTGGGGCCACGAAAGGAACTTATTACGAAATCTGCATCTAAAATCGGCATTGAGAAGCTTG
ATATTTAATAGCAATCCCAAGAGATGATCTTGTGAAGTATATTCTCAACCATGTTACAGCTATTGAAAGTCATTTATTTAGAAAAAATGAATGTCTTAGAAGCCATATGTGCGGTTAATTTTGTTGCAAAATTTGAATCTCAAAGTAGATTTCCACGGTGATCTTCCTTTTATGTTTGTAGTATCACAAAGTAAGTTCAA
ATGGTAGCGTTGAAGGAATATTTTGGGGCGAGTGTCAAGCATAGTATATTCCAGCAGTGAACGACAGGCATTGTAAGAATTTGCAAATATATTATTATCATTTGTGGCGAGGCCATGAGATGGAAATGCCTGAAAAGTTAGTTGTCTTATTCAAAGATAGATTAAAAAATTATTAACCCATGTGCAA
>TRINITY_DN100688_c1_g2_i1 from sample A4 / Example unspliced isoform:CTATCTTACCTCTGCGCGGTAAGATATTGAATGTTGAACGAAAGGATGAAGCAGCTATGTATAAAAATGAAGAAATTCAAAATCTCATCCTTGGATTAGGACTTGGGTTGAAGgtatgtcttagataatatagtatgtctcttgatgtttacaagctattatccatcgttgttgtttcttttgactgcttctgttatatt
tctaacttgccatgtattagGGTGAGGATTTCAACAAAGATGCTTTACGATATCACAAGATCATCATACTTACAGATGCTGATGTAGATGGTGCTCATATTCGCACTCTTCTATTAACTTTTTTTTTCAGATATCAGAAAGCTCTTTTTGAGGAAGGTAACATTTATGTAGGAGTTCCACCACTATACAAGGT
Intron 2 GTGTGTCAAA ... GTATGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.81 | 60 | 13 | 1 |
| A2 | 17.14 | 58 | 12 | 0 |
| A3 | 20 | 56 | 14 | 0 |
| A4 | 24.19 | 47 | 15 | 1 |
| A5 | 18.18 | 27 | 6 | 0 |
| A6 | 21.74 | 72 | 20 | 0 |
| A7 | 16.09 | 146 | 28 | 0 |
| A8 | 13.2 | 171 | 26 | 0 |
| A9 | 14.2 | 145 | 24 | 2 |
| A10 | 14.04 | 147 | 24 | 0 |
>TRINITY_DN41991_c0_g2_i5 from sample A9 / Example spliced isoformGTAGAAAATCCTGCAGGTATGACATTTGTAATCCTCTCTTTTTAGAGGCACAGCTTTGTTTGAATTTAAGCTTCAAGGCAGAGCAACTTTGTATTCTGGAGGCAGAGCAGCAGCCGCCTTGCAACAACAATACCATACCCAATGGCAATGGCGATGATCAAGCTTCCTGCTACGACATCTCTACGCCTGCTTGTCGCCAC
CCGACAACTCTGCATAAGCAACACCAGGTTCAGGGCGTCTCACTTGCGACTCATTTCTGTCAGGGCAAATGTTTCAGAGTCTTCCATCACAACCAGAAGAGCATGCACGTTCAGAAGGATTACAAATGTCATACCTGCAGGATATTCTACCACCATCCGGGCTTTTACGTTATCAGCTGTTTCAACAGAATCTTCATCTG
ATTCACCTGCTGCAAAATCTTATGATGCTGGACAGATTCAGGTTTTGGAAGGTTTAGATCCAGTACGAAAGCGGCCAGGGATGTACATTGGAAGCACTGGGCCTCGTGGTCTCCATCATCTGGTTTATGAAGTTTTGGACAATGCCATTGATGAGGCTCAAGCTGGTTATGCCACAAACATAGATGTTATTATCTTCCTT
GATGGTTCTGTTAGCATCACTGATGATGGTCGAGGGATTCCCACAGATTTACATCCTGTTACACACAAGTCTGCTTTAGAGACTGTTTTGACGGTGTTGCATGCTGGAGGCAAGTTTGGTGGAGAAAGCAGTGGTTATAATGTTTCTGGAGGATTGCATGGTGTTGGTCTTTCTGTAGTGAATGCGTTATCTGAGAAATT
GGAAGTGACTGTCTGGCGTGATGGAAAGGAGTGGGATCAGACCTATGTGTGTGGAAAACCAGTGACTGAATTAACCTCTCATGAAATTTTAGGTGAATCCAAGTTTCGTCAAGGAACACGTGTAAGGTTTTGGCCAGATAAAGAAGTCTTCACCACCACCACAGAGTTTGACTATAACACAATAGCTGGACGTGCTAGAG
AGCTTGCATTTTTGAACCCTCAGGTAAAGATCACCTTGAAGCAGGAGAATAAAGATGCAGGAAATGTAACCTATAATGAATATCACTATGCGGGGGGCTTAGTTGAATATGCCTGTTGGTTGAACCGTGACAAGGCACCTATTCATAAACCTATTTCCTTTACCAGGGAAAAGGATGGAGTTATTGTTGACGTAGCCCTT
CAGTGGTGCTCTGATGCATACACAGACACTTTGCTAGGATATGCAAACAGTATCCGAACAACTGATGGAGGTTCTCACATGGATGGTTTGAAATCCGCATTGACAAGAACATTTAATATCCTTGGACGGAAGTCAAAACTTATAAAGGAGAAAGATGAGAACCTGAGTGGTGAACATGTGAGGGAAGGGTTGACAGGTGT
AGTTTCGGTCAAAGTTCCAAAACCAGAGTTTGAGGGGCAAACAAAAACAAGGTTAGGAAATCCAGAGGTGCGGAGGATCGTGGACCAAGCTGTTCAGGAGTATCTTACAGAGTACTTGGAATGTAATCCTGGAGCTCTTGAATCAATTCTTTCAAAAGCTCTTAATGCATACAAGGCAGCAATGGCAGCAAGAAAAGCAA
GAGAGTTGGTAAGAAGAAAAAGCATTTTGAGACCCTCTGCACTTCCTGGAAAGCTTGCCGACTGCTCTGCTTCAGATCCTCGTGAAGCTGAGATTTTTATAGTTGAAGGAGAGTCGGCAGGAGGTAGCGCAAAACAAGGACGAGATAGACGATTTCAGGCTATCTTACCTTTGCGTGGTAAGATATTGAACGTTGAGCGC
AAGGATGAAGCAGCTATGTATAAGAATGAAGAAATTCAAAATCTTATCCTTGGATTAGGACTTGGACTGAAGGGTGAGGATTTCAAGAAAGATGCTTTGCGATATCATAAGGTTATCATACTTACAGATGCTGATGTCGATGGTGCTCATATTCGCACCCTTCTATTAACATTCTTTTTCAGATATCAGAGAGCTCTTTT
TGAGGAAGGCTACATATATGTAGGAGTTCCACCACTATACAAGGTCGAGAGGGGTAGGCAAGCTCATTATTGTTTCGATGATAATGAGTTGAAGAAATTGCAAAAGACTTTTCCGTCAAATGCTTCCTATAACATTCAGCGTTTCAAAGGTTTAGGAGAGATGATGCCTTTACAATTATGGGAAACAACTTTGGATCCAG
CAACAAGGAAGCTGAAGCAAGTAACAGTGGAAGATGCTGCAGAAGCAAATATGGTTTTCTCTTTATTAATGGGAAATCGGGTGGAGCCACGAAAGGAACTCATTGAAAATTCTGCATCTAAAATCAACATAGAAAAGCTTGATATTTAATAGCAATTTCAAGAATGAGGACCTTGTGAAGTATTTGTCAACCATGTTACA
CCTATGGGAAGTCATTTATTTGGAAAATAATGTCTTAGAAGCTTTAAGGGCTGTTAATTTTGTTACAAAATTTGGATCCCAGAATAGATATCGGCAGTGAAGTTCCTCTTATGTTTGTATCATCACAACGTAAAGTTCAAAGGGTGGCATTGGAGGAATTTTTTGGGAGATGTGAGGGGCAAGCATGCAGTAAACGACAG
ATGTTGTAAGAGTTTGCAAATGCATGATTGTCATTTTGGGTGAGGCCATGAGATGGAAATGCCTTAAATAAGTCAATTGCTTATCCATGTTGAGCGTGAGGAACTTGGCCCTTTTTTAAAGCAGGGTGATTTACCTTGATAAAAACTTGGAGCAAATTGAAACCATGGTGAGACAAGTTCTTGCAACTGTATCGGTGGTT
GTGTTCTTGAAGCTTCCCATTACATTACTACATGTCATTGCTTCCTTTAGGTTCTCTCATGTAAATCTCCTTGGTAATTAATTTGGGGGTATATTTATTGCTTCCAACCACTGATTTGGTGGATGGTTGTGGGTTATTCTTTTTCAATTTCCTGAAAAGGTTGAGCTATTGGCATTATATTTTTCCCAAGTGTTTGTATG
ACATCAGTAGAAGACTCATAGTCTCCGTGCCTTGACTTTTGTATCAGGGTTCCTTTTTAATGGAAATTTCCTTCGCAATGAAAA
>TRINITY_DN41991_c0_g2_i1 from sample A9 / Example unspliced isoform:GGCAGGAGGTAGCGCAAAACAAGGACGAGATAGACGATTTCAGGCTATCTTACCTTTGCGTGGTAAGATATTGAACGTTGAGCGCAAGGATGAAGCAGCTATGTATAAGAATGAAGAAATTCAAAATCTTATCCTTGGATTAGGACTTGGACTGAAGGGTGAGGATTTCAAGAAAGATGCTTTGCGATATCATAAGGTTA
TCATACTTACAGATGCTGATGTCGATGGTGCTCATATTCGCACCCTTCTATTAACATTCTTTTTCAGATATCAGAGAGCTCTTTTTGAGGAAGGCTACATATATGTAGGAGTTCCACCACTATACAAGGTCGAGAGGGGTAGGCAAGCTCATTATTGTTTCGATGATAATGAGTTGAAGAAATTGCAAAAGACTTTTCCG
TCAAATGCTTCCTATAACATTCAGCGTTTCAAAGgtgtgtcaaatcatgttaatatggaaaatttacttttgttatctgtgtcatgttacggagttggaagggaagcagtttaaattttggtattcttgacatcaatgctagtctgttcagtgtggggatggtttgcatgaaacttttagcttatgttgattgttggtat
ggacagGTTTAGGAGAGATGATGCCTTTACAATTATGGGAAACAACTTTGGATCCAGCAACAAGGAAGCTGAA