sp|P24805|TSJT1_TOBAC ----> Stem-specific protein TSJT1
Intron 1 GTTGACCAAA ... GATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.54 | 50 | 8.8 | 19 |
| A2 | 32.24 | 100.8 | 8.6 | 48 |
| A3 | 34.75 | 77 | 8.8 | 41 |
| A4 | 30.79 | 71.9 | 6.8 | 32 |
| A5 | 35.29 | 44 | 1.8 | 24 |
| A6 | 27.93 | 228.1 | 29.5 | 88.4 |
| A7 | 25 | 75 | 9.6 | 25 |
| A8 | 21.67 | 39.8 | 4.3 | 11 |
| A9 | 29.41 | 110.5 | 19.7 | 46 |
| A10 | 38.82 | 52 | 3.2 | 33 |
>TRINITY_DN124744_c3_g2_i4 from sample A1 / Example spliced isoformGATAATTCTCGTTCCGAAGATAAGCCCCCCCCAACGATCCGGAGGATTCAAGGCCTCCACAAGCTTTCTGTGCATATATATTGTGTGTTAGAGCTTCTTTGATATCAATGTTTATAGCTTCTCCCTAGTCTCAACTGTATCATAGATCTGTTCTAAGATTACTGGTGTGTATAGCAATTGCTCTAGGAATACAAGATGTT
GACGATATTTAACAGCACCGTGGCCTATGGACCAGAGGAGCTCAGATCTCCTACCGGAGAGATCAGTCCGAGCCCTGATCTGAAGAGGAGTTCTTCGGCTCTGCTGAGCTCTTTCCTGGATGCCTACCCGCAGTCAGTTTCTGTAAAAATGGACGAAATGGCTACCATGGCATACACACACAGTAATCAGTCGTTGTTCC
GACCAAGGTCGTTTGCTGTGAAGGACGATTGCTTCTGCCTGTTCGAAGGCACCCTGGAGAATCTGCCGAGTTTAAGGCAGCAATACGGCCTTTCAAAGTATGTAAACGAGGATTTGTTGGTCATAGAAGCCTACAAGACGTTCAGAGATCGCGCGCCTTATCCTGCGAGTAAGATGGTTGGACACTTGGAGGGGCAATTT
GCTTTTGTGATATTTGACAGATGCACCAGAACTGTATTCACTGCTGCTGATTCGAATGGGAAAGTTCCACTCTACTGGGGCATCACAGCTGATGGCTGCCTTGCGTTCTCAGACGATGCACAACTGTTAAAATCAGCTTGCGGAAAGTCGTTGGCAGCGTTCCCTCAAGGTAACTAACAACCTATACATTATGTATATTC
AGATGAAGAAAACAATTGGGCTAATCTAACAGGCAGGATCGCAAAAATTCCCAATATCTCATTGGAAAAATCCCATATTTCTCCACTATTTTTTCCTCTTTTGTTTTCCCAAGACCACTCAGATCAGATCAGTTGCCATCCAAGTACAAATAAAATTGCAGATATTTTAAACTGTTTATTCATGGGTGGATTATAATTTT
GAAAAGGAGACTTGATCAAACAGACCTTGAACTTCTCCAGTATCTAGGAGCATCTGAATGGAAAGCGCAGTAACTGGTGGCCAATTTCTAAATAACTTGTGTGGTGGCAGGTTGCTTTTACTCTAGTGCTCTAGGGCTGCGGAGCTATGAATACCCCAAGAACAAAGTGAAGGGTATTCCAAACATGGATGATGGTGAAA
TGTGTGGCACGGCCTTTAAGGTGGATGAAAACTTCGCTGCTTCGATGGTCTGAAACTGTACTGGTAGAGAAGTACCATGATGTTGAATCCCAAAAAAATGGATCAAAATACTGCGTGGCGATCATGGATTGTATATAATAGGGTGTTTTTGCAATTAGATTGTATATAATAGGGTGTTTTTCCAATTCTGTTTTAGAAGA
TTAGTATAATTTACATTACTTTGGTCATAGTATATGTAGAGAGGACTTAGGGGTGAAGCCTGCAACCAGTATTTTTTTTCAGTTCTGATTTAGAAGATTAGCATAATTTACATTACTTTGGTCATAGTATATGCAGAGAGGACTTAGAAGTGAAGCTTGCAACCGATTATATTGAATGGTAGGCTGGAAGAACAGAGAGG
TGAAGCTTGCAACCAATCATATTCAATGGTTTGCTTGGATCAAGTTCAGTATAGTATTATGATATTGACATAATTATAGCTTGCCACTATGACCTTTATGTAAGGGTATTGACTCTTAAATGCCCAACTTTTGAGTTGTAATATAAAATCACATCAGGATGTTGAAGCAGATATTCATTTACAATATTTGTTTGCAGTAT
ACACAGTTTACACTAAAAATAAAAAATCA
>TRINITY_DN124744_c3_g2_i1 from sample A1 / Example unspliced isoform:ATGTGTGGCACGGCCTTTAAGgttgaccaaagctatactcatattcatttcaatctctctttaaattgtttagaagtcaatctgctttgtcagttaaatgttttttatgttgtgatattggattttacagGTGGATGAAAACTTCGCTGCTTCGATGGTCTGAAACTGTACTGGTAGAGAAGTACCATGATGTTGAATCC
CAAAAAAATGGATCAAAATACTGCGTGGCGATCATGGATTGTATATAATAGGGTGTTTTTGCAATTAGATTGTATATAATAGGGTGTTTTTCCAATTCTGTTTTAGAAGATTAGTATAATTTACATTACTTTGGTCATAGTATATGTAGAGAGGACTTAGGGGTGAAGCCTGCAACCAGTATTTTTTTTCAGTTCTGATT
TAGAAGATTAGCATAATTTACATTACTTTGGTCATAGTATATGCAGAGAGGACTTAGAAGTGAAGCTTGCAACCGATTATATTGAATGGTAGGCTGGAAGAACAGAGAGGTGAAGCTTGCAACCAATCATATTCAATGGTTTGCTTGGATCAAGTTCAGTATAGTATTATGATATTGACATAATTATAGCTTGCCACTAT
GACCTTTATGTAAGGGTATTGACTCTTAAATGCCCAACTTTTGAGTTGTAATATAAAATCACATCAGGATGTTGAAGCAGATATTCATTTACAATATTTGTTTGCAGTATACACAGTTTACACTAAAAATAAAAAATCA
Intron 2 GTAACTAACA ... GTGGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.39 | 53 | 8 | 19 |
| A2 | 13.25 | 72 | 4.3 | 11 |
| A3 | 19.74 | 61 | 5 | 15 |
| A4 | 24 | 57 | 6.7 | 18 |
| A5 | 13.16 | 33 | 3 | 5 |
| A6 | 24.07 | 164 | 9.3 | 52 |
| A7 | 26.87 | 49 | 4 | 18 |
| A8 | 6 | 47 | 2.3 | 3 |
| A9 | 21.05 | 105 | 8.7 | 28 |
| A10 | 13.04 | 20 | 6.3 | 3 |
>TRINITY_DN124744_c3_g2_i3 from sample A1 / Example spliced isoformGATAATTCTCGTTCCGAAGATAAGCCCCCCCCAACGATCCGGAGGATTCAAGGCCTCCACAAGCTTTCTGTGCATATATATTGTGTGTTAGAGCTTCTTTGATATCAATGTTTATAGCTTCTCCCTAGTCTCAACTGTATCATAGATCTGTTCTAAGATTACTGGTGTGTATAGCAATTGCTCTAGGAATACAAGATGTT
GACGATATTTAACAGCACCGTGGCCTATGGACCAGAGGAGCTCAGATCTCCTACCGGAGAGATCAGTCCGAGCCCTGATCTGAAGAGGAGTTCTTCGGCTCTGCTGAGCTCTTTCCTGGATGCCTACCCGCAGTCAGTTTCTGTAAAAATGGACGAAATGGCTACCATGGCATACACACACAGTAATCAGTCGTTGTTCC
GACCAAGGTCGTTTGCTGTGAAGGACGATTGCTTCTGCCTGTTCGAAGGCACCCTGGAGAATCTGCCGAGTTTAAGGCAGCAATACGGCCTTTCAAAGTATGTAAACGAGGATTTGTTGGTCATAGAAGCCTACAAGACGTTCAGAGATCGCGCGCCTTATCCTGCGAGTAAGATGGTTGGACACTTGGAGGGGCAATTT
GCTTTTGTGATATTTGACAGATGCACCAGAACTGTATTCACTGCTGCTGATTCGAATGGGAAAGTTCCACTCTACTGGGGCATCACAGCTGATGGCTGCCTTGCGTTCTCAGACGATGCACAACTGTTAAAATCAGCTTGCGGAAAGTCGTTGGCAGCGTTCCCTCAAGGTTGCTTTTACTCTAGTGCTCTAGGGCTGCG
GAGCTATGAATACCCCAAGAACAAAGTGAAGGGTATTCCAAACATGGATGATGGTGAAATGTGTGGCACGGCCTTTAAGGTGGATGAAAACTTCGCTGCTTCGATGGTCTGAAACTGTACTGGTAGAGAAGTACCATGATGTTGAATCCCAAAAAAATGGATCAAAATACTGCGTGGCGATCATGGATTGTATATAATAG
GGTGTTTTTGCAATTAGATTGTATATAATAGGGTGTTTTTCCAATTCTGTTTTAGAAGATTAGTATAATTTACATTACTTTGGTCATAGTATATGTAGAGAGGACTTAGGGGTGAAGCCTGCAACCAGTATTTTTTTTCAGTTCTGATTTAGAAGATTAGCATAATTTACATTACTTTGGTCATAGTATATGCAGAGAGG
ACTTAGAAGTGAAGCTTGCAACCGATTATATTGAATGGTAGGCTGGAAGAACAGAGAGGTGAAGCTTGCAACCAATCATATTCAATGGTTTGCTTGGATCAAGTTCAGTATAGTATTATGATATTGACATAATTATAGCTTGCCACTATGACCTTTATGTAAGGGTATTGACTCTTAAATGCCCAACTTTTGAGTTGTAA
TATAAAATCACATCAGGATGTTGAAGCAGATATTCATTTACAATATTTGTTTGCAGTATACACAGTTTACACTAAAAATAAAAAATCA
>TRINITY_DN124744_c3_g2_i4 from sample A1 / Example unspliced isoform:GATAATTCTCGTTCCGAAGATAAGCCCCCCCCAACGATCCGGAGGATTCAAGGCCTCCACAAGCTTTCTGTGCATATATATTGTGTGTTAGAGCTTCTTTGATATCAATGTTTATAGCTTCTCCCTAGTCTCAACTGTATCATAGATCTGTTCTAAGATTACTGGTGTGTATAGCAATTGCTCTAGGAATACAAGATGTT
GACGATATTTAACAGCACCGTGGCCTATGGACCAGAGGAGCTCAGATCTCCTACCGGAGAGATCAGTCCGAGCCCTGATCTGAAGAGGAGTTCTTCGGCTCTGCTGAGCTCTTTCCTGGATGCCTACCCGCAGTCAGTTTCTGTAAAAATGGACGAAATGGCTACCATGGCATACACACACAGTAATCAGTCGTTGTTCC
GACCAAGGTCGTTTGCTGTGAAGGACGATTGCTTCTGCCTGTTCGAAGGCACCCTGGAGAATCTGCCGAGTTTAAGGCAGCAATACGGCCTTTCAAAGTATGTAAACGAGGATTTGTTGGTCATAGAAGCCTACAAGACGTTCAGAGATCGCGCGCCTTATCCTGCGAGTAAGATGGTTGGACACTTGGAGGGGCAATTT
GCTTTTGTGATATTTGACAGATGCACCAGAACTGTATTCACTGCTGCTGATTCGAATGGGAAAGTTCCACTCTACTGGGGCATCACAGCTGATGGCTGCCTTGCGTTCTCAGACGATGCACAACTGTTAAAATCAGCTTGCGGAAAGTCGTTGGCAGCGTTCCCTCAAGgtaactaacaacctatacattatgtatattc
agatgaagaaaacaattgggctaatctaacaggcaggatcgcaaaaattcccaatatctcattggaaaaatcccatatttctccactattttttcctcttttgttttcccaagaccactcagatcagatcagttgccatccaagtacaaataaaattgcagatattttaaactgtttattcatgggtggattataatttt
gaaaaggagacttgatcaaacagaccttgaacttctccagtatctaggagcatctgaatggaaagcgcagtaactggtggccaatttctaaataacttgtgtggtggcagGTTGCTTTTACTCTAGTGCTCTAGGGCTGCGGAGCTATGAATACCCCAAGAACAAAGTGAAGGGTATTCCAAACATGGATGATGGTGAAA
TGTGTGGCACGGCCTTTAAGGTGGATGAAAACTTCGCTGCTTCGATGGTCTGAAACTGTACTGGTAGAGAAGTACCATGATGTTGAATCCCAAAAAAATGGATCAAAATACTGCGTGGCGATCATGGATTGTATATAATAGGGTGTTTTTGCAATTAGATTGTATATAATAGGGTGTTTTTCCAATTCTGTTTTAGAAGA
TTAGTATAATTTACATTACTTTGGTCATAGTATATGTAGAGAGGACTTAGGGGTGAAGCCTGCAACCAGTATTTTTTTTCAGTTCTGATTTAGAAGATTAGCATAATTTACATTACTTTGGTCATAGTATATGCAGAGAGGACTTAGAAGTGAAGCTTGCAACCGATTATATTGAATGGTAGGCTGGAAGAACAGAGAGG
TGAAGCTTGCAACCAATCATATTCAATGGTTTGCTTGGATCAAGTTCAGTATAGTATTATGATATTGACATAATTATAGCTTGCCACTATGACCTTTATGTAAGGGTATTGACTCTTAAATGCCCAACTTTTGAGTTGTAATATAAAATCACATCAGGATGTTGAAGCAGATATTCATTTACAATATTTGTTTGCAGTAT
ACACAGTTTACACTAAAAATAAAAAATCA