sp|Q9SY73|PTALR_ARATH ----> NADPH-dependent pterin aldehyde reductase
Intron 1 GTTTACTATT ... ATCATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.93 | 13 | 20 | 13 |
| A2 | 83.33 | 4 | 19 | 21 |
| A3 | 72.09 | 6 | 22 | 9 |
| A4 | 58.62 | 6 | 11 | 6 |
| A5 | 84.62 | 1 | 5 | 6 |
| A6 | 68.16 | 71 | 165 | 139 |
| A7 | 70.6 | 61 | 155 | 138 |
| A8 | 73.91 | 66 | 166 | 208 |
| A9 | 67.38 | 84 | 181 | 166 |
| A10 | 75.44 | 21 | 82 | 47 |
>TRINITY_DN105565_c0_g1_i1 from sample A2 / Example spliced isoformGTTTTATCTCACACACCAATAAACTATAAGACTGTACTTATGGCATTGGCACCCGCTCTCCCGCATTCAATCTCATCATTCCCAGCGTTACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAGGGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCT
TGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGACACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAAACTTGCAACTCTTCGTTCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGTCTTCAGACATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTAC
CCGATATTATTGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAAAAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCT
GGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGGGCTCCTCACGCAGCCACAAT
GATTCTTGGTCTGACAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTC
TTTCACGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTTAAATTTTGATGATGGAGAG
>TRINITY_DN105565_c0_g1_i6 from sample A2 / Example unspliced isoform:CAGGTATACATGATTTAATGAGATAAAGGCTTTTTTTAAACAAGGTATTGGAAGGTATTCTAAGCAAGGGATGTACTTGATCTTCCAGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCA
TTTTTTGCCTCATGTGATAGCAAAAAAAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACT
TACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGGGCTCCTCACGCAGCCACAATGATTCTTGGTCTGACAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGgtttactattaa
aaacctcctctgtccttttagctcaagcaatattacttgaagaatgctacagttgaatgcaattgttatgttcatgattgattttgacttatcatcatttatttctttgctactgtaacttgctatcattttagGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCC
AGTGCCATTGTAAATTGAGGTCTTTCACGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTTAAATTTTGATGATGGAGAG
Intron 2 GTTTGTTTCT ... CAGTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.69 | 46 | 17 | 10 |
| A2 | 38.03 | 22 | 11 | 16 |
| A3 | 23.57 | 60 | 24 | 13 |
| A4 | 31.65 | 27 | 14 | 11 |
| A5 | 18.45 | 42 | 15 | 4 |
| A6 | 25.08 | 118 | 50 | 29 |
| A7 | 27.94 | 147 | 72 | 42 |
| A8 | 18.38 | 111 | 33 | 17 |
| A9 | 29.06 | 155 | 71 | 56 |
| A10 | 24.14 | 110 | 45 | 25 |
>TRINITY_DN36162_c0_g1_i5 from sample A9 / Example spliced isoformCCCGACTCCCATTGACTACTTGTGCACCACAAACTAGTTTATGGTTTCTTGTTCTCCCAACCGCTTTGTGAAAAAAAAACACTGGAATTAACACCCAAATGACCCTATATATGTTTTATCTCACACACCAATAAACTATAAGACTGTACTTATGGCATTGGCACCCGCTCTCCCGCATTCAATCTCATCATTCCCAGCGT
TACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAGGGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGACACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAAACTTGCAACTCTTCGT
TCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGACATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTACCCGATATTATTGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACA
GCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAAAAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGG
AGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGGGCTCCTCACGCAGCCACAATGATTCTTGGTCTGACAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTT
CTGAGGTTTACTATTAAAAACCTCCTCTGTCCTTTTAGCTCAAGCAATATTACTTGAAGAATGCTACAGTTGAATGCAATTGTTATGTTCATGATTGATTTTGACTTATCATCATTTATTTCTTTGCTACTGTAACTTGCTATCATTTTAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAG
CCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTCTTTCACGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTTAAATTTTGATGATGGGGAGGAAATTTTGTGAAAGGAGAATTAGATATATCCTCACCATGTAATGTTATATTGGAAAGGTGAGTTTTTGAAGTTCACTAGAGAGGT
GACAATTGAAGATATTGGAAATGTGCATTTTTCGTTATAGAGGTGACAGTTGTGGATATTGGAAATATGAGTTTTTGAAGTTCTCTTTAGAGCTGTGCCGGTTTTATATGTAGGAAATGTGATTTGGCGCTGTTGCACATTTCTAATGTTTTCAAATAAAT
>TRINITY_DN36162_c0_g1_i4 from sample A9 / Example unspliced isoform:CCCGACTCCCATTGACTACTTGTGCACCACAAACTAGTTTATGGTTTCTTGTTCTCCCAACCGCTTTGTGAAAAAAAAACACTGGAATTAACACCCAAATGACCCTATATATGTTTTATCTCACACACCAATAAACTATAAGACTGTACTTATGGCATTGGCACCCGCTCTCCCGCATTCAATCTCATCATTCCCAGCGT
TACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAGGGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGACACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAAACTTGCAACTCTTCGT
TCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGgtttgtttcttcaccacactcggaatccccatttccttaaatttcactccacatgttctctcgattactcaacttataatttacagtcttcagACATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTACCC
GATATTATTGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAAAAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGG
AGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGGGCTCCTCACGCAGCCACAATGA
TTCTTGGTCTGACAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGGTTTACTATTAAAAACCTCCTCTGTCCTTTTAGCTCAAGCAATATTACTTGAAGAATGCTACAGTTGAATGCAATTGTTATGTTCATGAT
TGATTTTGACTTATCATCATTTATTTCTTTGCTACTGTAACTTGCTATCATTTTAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTCTTTCACGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTT
AAATTTTGATGATGGGGAGGAAATTTTGTGAAAGGAGAATTAGATATATCCTCACCATGTAATGTTATATTGGAAAGGTGAGTTTTTGAAGTTCACTAGAGAGGTGACAATTGAAGATATTGGAAATGTGCATTTTTCGTTATAGAGGTGACAGTTGTGGATATTGGAAATATGAGTTTTTGAAGTTCTCTTTAGAGCTG
TGCCGGTTTTATATGTAGGAAATGTGATTTGGCGCTGTTGCACATTTCTAATGTTTTCAAATAAAT
Intron 3 GTGAAGTTAG ... TCTTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.43 | 44 | 0 | 12 |
| A2 | 19.35 | 50 | 10 | 12 |
| A3 | 18.52 | 44 | 11 | 10 |
| A4 | 37.84 | 23 | 7 | 14 |
| A5 | 25.58 | 32 | 8 | 11 |
| A6 | 31.15 | 210 | 30 | 95 |
| A7 | 31.41 | 238 | 27 | 109 |
| A8 | 28.77 | 208 | 30 | 84 |
| A9 | 31.1 | 226 | 21 | 102 |
| A10 | 30.48 | 203 | 24 | 89 |
>TRINITY_DN105315_c0_g1_i1 from sample A3 / Example spliced isoformCTTTGTGAAAAAAAAAACACTGGAATTAACACCCAAATGACCCTATATATGATTTATCTCACACACCAATAAACTATAAGACTGTACTTATGGCATTGGCACCCGCTCTCCCGCATTCAATCTCATCATTCCCAGCGTTACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAG
GGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGACACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAAACTTGCAACTCTTCGTTCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGTCTTCAGA
CATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTACCCGATATTATTGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAA
AAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCC
GCTGCCTTTTATCAGACACCCGAAACTTGGGCTCCTCACGCAGCCACAATGATTCTTGGTCTGACAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGGTTTACTATTAAAAACCTCCTCTGTCCTTTTAGCTCAA
GCAATATTACTTGAAGAATGCTACAGTTGAATGCAATTGTTATGTTCATGATTGATTTTGACTTATCATCATTTATTTCTTTGCTACTGTAACTTGCTATCATTTTAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTCTTTC
ACGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTTAAATTTTGATGATGGGGAGGAAATTTTGTGAAAGGAGAATTAGATATATCCTCACCATGT
>TRINITY_DN105315_c0_g1_i2 from sample A3 / Example unspliced isoform:CTTTGTGAAAAAAAAAACACTGGAATTAACACCCAAATGACCCTATATATGATTTATCTCACACACCAATAAACTATAAGACTGTACTTATGGCATTGGCACCCGCTCTCCCGCATTCAATCTCATCATTCCCAGCGTTACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAG
GGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGACACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAAACTTGCAACTCTTCGTTCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGTCTTCAGA
CATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTACCCGATATTATTGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAA
AAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGGAGAGgtgaagttagttcatgatcctatgttgttggtttgaaaattcttagcagtgcctgcatagataagaacacaatttgatttttcaagcttgtcgccataaatatttcttgaacagGTTTCACCTTACTGTGCGTCCAAATGGGCG
ATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGGGCTCCTCACGCAGCCACAATGATTCTTGGTCTGACAGCAGCAGATAATGGTGCTTC
ATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGGTTTACTATTAAAAACCTCCTCTGTCCTTTTAGCTCAAGCAATATTACTTGAAGAATGCTACAGTTGAATGCAATTGTTATGTTCATGATTGATTTTGACTTATCATCATTTATTTCTTTGCTA
CTGTAACTTGCTATCATTTTAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTCTTTCACGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTTAAATTTTGATGATGGGGAGGAAATTTTGTGAAAG
GAGAATTAGATATATCCTCACCATGT
Intron 4 GTTTGTTTCT ... TAATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.93 | 43.9 | 17 | 7.1 |
| A2 | 30.72 | 24.8 | 11 | 15.6 |
| A3 | 28.57 | 60 | 24 | 12.4 |
| A4 | 34.15 | 27 | 14 | 10.1 |
| A5 | 26.32 | 42 | 15 | 5.1 |
| A6 | 29.76 | 118 | 50 | 23.3 |
| A7 | 32.88 | 147 | 72 | 35.8 |
| A8 | 23.25 | 108.9 | 33 | 12.2 |
| A9 | 31 | 158 | 71 | 48 |
| A10 | 29.22 | 109 | 45 | 20.5 |
>TRINITY_DN109309_c0_g2_i4 from sample A1 / Example spliced isoformTTATGGCATTGGCACCCGCTCTCCCGCATTCAATCTCATCATTCCCAGCGTTACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAGGGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGA
CACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAAACTTGCAACTCTTCGTTCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGTCTTCAGACATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTACCCGATATTATTGTGAATAATGCAGGCATCATCAATAA
GAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAAAAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGA
TTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGGTATTTACTTGTACCTAATTCTTATTCTCAGTGGGTATGATGTTTTTAAGAATGTTGT
TGAAAATATTAGTTATGGGGAGTTGTTATATAATTTGTTCAAGAGTTTATAATTTTGGAACATATGGCAGGAAAGCTCG
>TRINITY_DN109309_c0_g2_i2 from sample A1 / Example unspliced isoform:TTATGGCATTGGCACCCGCTCTCCCGCATTCAATCTCATCATTCCCAGCGTTACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAGGGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGA
CACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAAACTTGCAACTCTTCGTTCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGgtttgtttcttcaccacactcggaatccccatttccttaaatttcactccacatgttctctcgattactcaacttataatttacagTCTTCAGAC
ATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTACCCGATATTATTGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAAA
AAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCG
CTGCCTTTTATCAGACACCCGAAACTTGGGCTCCTCACGCAGCCACAATGATTCTTGGTCTGACAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGGTTTACTATTAAAAACCTCCTCTGTCCTTTTAGCTCAAG
CAATATTACTTGAAGAATGCTACAGTTGAATGCAATTGTTATGTTCATGATTGATTTTGACTTATCATCATTTATTTCTTTGCTACTGTAACTTGCTATCATTTTAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTCTTTCA
CGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTTAAATTTTGATGATGGGGAGGAAATTTTGTGAAAGGAGAATTAGATATATCCTCACCATGTAATGTTATATTGGAAAGGTGAGTTTTTGAAGTTCACTAGAGAGGTGACAATTGAAGATATTGGAAATGTGCATTTTTCGTTATAGAGGT
GACAGTTGTGGATATTGGAAATATGAGTTTTTGAAGTTCTCTTTAGAGCTGTGCCGGTTTTATATGTAGGAAATGTGATTTGGCGCTGTTGCACATTTCTAATGTTTTCAAATAAATTATACAACAGAACTTGAAAGCATATTGTTAGGTACTTGTAGGATCGTAAAATAGTAGCACAG
Intron 5 GTTTCATCCA ... TTGTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 35 | 14 | 11 |
| A2 | 21.35 | 35 | 16 | 3 |
| A3 | 23.46 | 31 | 9 | 10 |
| A4 | 13.51 | 16 | 3 | 2 |
| A5 | 26.67 | 11 | 8 | 0 |
| A6 | 23.49 | 228 | 89 | 51 |
| A7 | 24.05 | 240 | 104 | 48 |
| A8 | 21.1 | 288 | 100 | 54 |
| A9 | 23.05 | 237 | 95 | 47 |
| A10 | 22.49 | 212 | 102 | 21 |
>TRINITY_DN34241_c0_g1_i5 from sample A6 / Example spliced isoformCCGCATATTCCCGGTCCCCGACTCCCATTGACTACTTGTGCACCACAAACTAGTTTATGGTTTCTTGTTCTCCCAACCGCTTTGTGAAAAAAAAACACTGGAATTAACACCCAAATGACCCTATATATGTTTTATCTCACACACCAATAAACTATAAGACTGTACTTATGGCATTGGCACCCGCTCTCCCGCATTCAATC
TCATCATTCCCAGCGTTACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAGGGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGACACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAA
ACTTGCAACTCTTCGTTCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGGTTTGTTTCTTCACCACACTCGGAATCCCCATTTCCTTAAATTTCACTCCACATGTTCTCTCGATTACTCAACTTATAATTTACAGTCTTCAGACATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGA
AACCAAGGGCGTACCCGATATTATTGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAATTTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAAAAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGG
GTCGTTCTGCTGCTGGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTACCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGGGCTCCT
CACGCAGCCACAATGATTCTTGGTCTGACAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGGTTTACTATTAAAAACCTCCTCTGTCCTTTTAGCTCAAGCAATATTACTTGAAGAATGCTACAGTTGAATGCAA
TTGTTATGTTCATGATTGATTTTGACTTATCATCATTTATTTCTTTGCTACTGTAACTTGCTATCATTTTAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTCTTTCACGAAATGAATAACACAAAAGATGATTGATTCATGC
TGTTAATATTTATTTTAAATTTTGATGATGGGGAGGAAATTTTGTGAAAGGAGAATTAGATATATCCTCACCATGTAATGTTATATTGGAAAGGTGAGTTTTTGAAGTTCACTAGAGAGGTGACAATTGAAGATATTGGAAATGTGCATTTTTCGTTATAGAGGTGACAGTTGTGGATATTGGAAATATGAGTTTTTGAA
GTTCACTAGAG
>TRINITY_DN34241_c0_g1_i4 from sample A6 / Example unspliced isoform:CCGCATATTCCCGGTCCCCGACTCCCATTGACTACTTGTGCACCACAAACTAGTTTATGGTTTCTTGTTCTCCCAACCGCTTTGTGAAAAAAAAACACTGGAATTAACACCCAAATGACCCTATATATGTTTTATCTCACACACCAATAAACTATAAGACTGTACTTATGGCATTGGCACCCGCTCTCCCGCATTCAATC
TCATCATTCCCAGCGTTACCAAAACAAAGGAAACAGAATCAGAAATCGATGTTGGGGGCAATAATGAACAAAGAAAAGGGCTCTTCTACAGAGAAGATGATATTCATCACAGGCGTGAGCAAAGGGCTTGGAAGAGTTCTCGCAGTGGAATTGGCATCCAGAGGACACACTGTCATCGGTTGCGCTCGGTCTGAAGAGAA
ACTTGCAACTCTTCGTTCGCAGCTCTGCGCGGAAGATCCTTCAAAGCATCTTTTACGGGTTGCAGATGTGTCTTCAGACATCAGTGTGCGAGAATTGGTGAATGTCGTGGTCGAAACCAAGGGCGTACCCGATATTATTGTGAATAATGCAGGCATCATCAATAAGAATGGCAAGCTATGGGAGGTCCCTGCAGAGGAAT
TTGATGCAGTCATAGACATCAATTTGAAGGGAACAGCCAATGTGCTTCGCCATTTTTTGCCTCATGTGATAGCAAAAAAAAGGGGGATAGTTGTGAATTTGTCATCAGGATGGGGTCGTTCTGCTGCTGGAGAGGTTTCACCTTACTGTGCGTCCAAATGGGCGATTGAGGGTTTAACAAAGTCAGTGGCTAAGGAAGTA
CCACAAGGAATAGCTGTTGTTGCATTGAGTCCAGGAGTGATCAATACCGACTTACTATCATCATGTTTTGGTGCATCCGCTGCCTTTTATCAGACACCCGAAACTTGgtttcatccatttgggcgttgaagaatccaatgcttttgtagattttttggtagctagaggttttatttatcatttttacaagattggtaagc
aactcaagaagggtctatttaaagtgggcacaataaagaagttagcggacatgcctactttatgagtcattctgtaattttccctctcagtattgtcatgaattaaacctggatccacttcttgggaattgtacagttctcttggtggcaattcaacgttatttatacattagcattgtcttagacgtatagttttcttg
gtggaaagtcttagatgtttaagcagttaacaactacaaacagcaatagttgatatttttacaggaattcctctcagcaaaattgcatccagatcttttgtctggtaactatttgtatattagcatatggttaattattttttatgaaatttctgttgttgtcagGGCTCCTCACGCAGCCACAATGATTCTTGGTCTGA
CAGCAGCAGATAATGGTGCTTCATTGAATGTTTGAACGGCTGTACCAGTCCTCGTTTAATATATCCTGTTAATGGAATGAGGTGTTACATGTTCTGAGGTTTACTATTAAAAACCTCCTCTGTCCTTTTAGCTCAAGCAATATTACTTGAAGAATGCTACAGTTGAATGCAATTGTTATGTTCATGATTGATTTTGACTT
ATCATCATTTATTTCTTTGCTACTGTAACTTGCTATCATTTTAGGAAAAATGGAAATGAAGATGACATGCTTTTATGAAGGTAAATCTTTAAGCCTATAGGCATTCTCCCAGTGCCATTGTAAATTGAGGTCTTTCACGAAATGAATAACACAAAAGATGATTGATTCATGCTGTTAATATTTATTTTAAATTTTGATGA
TGGGGAGGAAATTTTGTGAAAGGAGAATTAGATATATCCTCACCATGTAATGTTATATTGGAAAGGTGAGTTTTTGAAGTTCACTAGAGAGGTGACAATTGAAGATATTGGAAATGTGCATTTTTCGTTATAGAGGTGACAGTTGTGGATATTGGAAATATGAGTTTTTGAAGTTCACTAGAG