NA ----> NA
Intron 1 GTATTACAAG ... CTCTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.32 | 138 | 8.8 | 2.5 |
| A2 | 4.48 | 112.5 | 5.8 | 2.5 |
| A3 | 3.86 | 118 | 5.3 | 0.8 |
| A4 | 5.24 | 97.3 | 5.5 | 4 |
| A5 | 2.98 | 37 | 1.3 | 0 |
| A6 | 2.93 | 288.8 | 9.3 | 2.5 |
| A7 | 3.25 | 260 | 9.3 | 0 |
| A8 | 3.19 | 221 | 7.8 | 0.8 |
| A9 | 3.5 | 279 | 11 | 0.8 |
| A10 | 3.99 | 199.5 | 9.3 | 0 |
>TRINITY_DN103282_c0_g1_i10 from sample A4 / Example spliced isoformCGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGACGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTT
TGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGAGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCA
AGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGT
GTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGG
AAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAG
>TRINITY_DN103282_c0_g1_i4 from sample A4 / Example unspliced isoform:CGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGACGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTT
TGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGAGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCA
AGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGgtattacaagtgcttattaatcaaagcctaaaattgttatcccattggtagtatgcagaaaacttgacaagtttttctttgctg
atgctagaattatctctatgcagAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGTAAGTTTCCCAGAAATTGTTTTGCTTGTTTGTCTTATGATTTCTTTTTGGAGGATCCCTGTTTTTGTTTTAG
TTCTTTACTCTGAAACTATGTATTGCTATTGTACCTGTATCTTTGTTTCTACTGACAAAATTGTTTGCATGCTGGCTATTTCAATACGCGTGCCTAAATATCCTCTTTTTGGGCATTGTAGGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTG
GATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATAC
CTACTATTTCAGGTGGGGACTACTGTTATTTTAGCCCTTTTTGATAGAAATAAGTCTATACATCAAAAGAAGATAGAGATGTTTAAAGCCTATGCTACTGGTTATATTTAAGTCTGCCTATTCTTAATTTGGAAGCAATTATAATTTTATATAGAGTGCATATCATACGTTTAAGTGGTGGCTGAAGTCTGAATTTTAAG
ATTCTTTAAATATTGATTTTTCAAACCGCTTTTGCTTGAAACAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAAGTGAGTGAT
TAATTGAACAGATGGATTTCTTTTCTGCTTTGCTTGTGCAAATCGGTTATGATGTTACATCTATTAACCATGGATTTCTTACCAGTGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCT
Intron 2 GTAAGACAAG ... AAATTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.34 | 69 | 10 | 15 |
| A2 | 16 | 42 | 3 | 13 |
| A3 | 23.23 | 38 | 13 | 10 |
| A4 | 20.9 | 53 | 16 | 12 |
| A5 | 21.05 | 30 | 7 | 9 |
| A6 | 20.82 | 232 | 49 | 73 |
| A7 | 21.72 | 164 | 40 | 51 |
| A8 | 24.45 | 241 | 71 | 85 |
| A9 | 17.17 | 205 | 46 | 39 |
| A10 | 29.97 | 118 | 46 | 55 |
>TRINITY_DN41557_c0_g1_i4 from sample A6 / Example spliced isoformTATGGCCATGCCCGCTTTGGCAAGACTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGAATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTG
TTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGG
AAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATACCTACTATTTCAGCTATGCTACTAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAG
TCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAATGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCTCAGCCCCATCCCCACTGCTGGCTAAGTCTAGAATTTA
AGGATGGTCATACGTTGCAACCAGGTGTTTGGTACTATACAATTGTGGAAGCTGATCACATTCTTTTCATTATCAACCGAGAAAGAGCAGGGGTACAGTTCGATATATTGTACGATAGCATTTTTCAAAGATGTCGAAAGCAGATGTCAAGAGCAATTAGTGCTGTTCCTTCTGTCGATGAGGGATTGGGTCATATATGC
AGTAGTGTGGAGAATTGTGTGTGCCACTTATCTAGATTTGATCACAGACAGTAGTGAAATCTGGTCATCTTGTATTTCAAAGAAGATAAAAAGTTATTTTTTAACAGCCTCCCCAATACAATGTAGGAGGCTGTTTACTTCATTCAAATTTCAATTCATGAGGCGAGTATTGATTTTACCTCTTATGGCATGATTGTCTG
TACTTTGAATTTCTTTATAGGCATTGATAACAAGAACATCAAGGAATAGACTGGCATAGATACTCCTGTCGTTCCTCAATTTCTCTCAATCGATATGACTACCCCACATAAAAACTATAAAAGAAATATTGAGACATTAGGTCCCTCATTTCGGATTTCTGTATCTGTTCATGAAAGAAAAAATC
>TRINITY_DN41557_c0_g1_i8 from sample A6 / Example unspliced isoform:CGTTCTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTTTGG
CTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTTCCTGATTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCAAGA
CTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTC
TACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAA
TGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATACCTACTATTTCAGCTATGCTACTAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGC
AGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAATGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCTCAGCCCCATCCCCACTGCTGGCTAAGTCTAGAATTTAAGGATGGTCATACGTTGCAACCAGGTGTTTGgtaagacaag
taaataacttgtgtcaagctttgagaatgatctgtttaggagatttctaatttgtgaaattgacagGTACTATACAATTGTGGAAGCTGATCACATTCTTTTCATTATCAACCGAGAAAGAGCAGGGGTACAGTTCGATATATTGTACGATAGCATTTTTCAAAGATGTCGAAAGCAGATGTCAAGAGCAATTAGTGCTG
TTCCTTCTGTCGATGAGGGATTGGGTCATATATGCAGTAGTGTGGAGAATTGTGTGTGCCACTTATCTAGATTTGATCACAGACAGTAGTGAAATCTGGTCATCTTGTATTTCAAAGAAGATAAAAAGTTATTTTTTAACAGCCTCCCCAATACAATGTAGGAGGCTGTTTACTTCATTCAAATTTCAATTCATGAGGCG
AGTATTGATTTTACCTCTTATGGCATGATTGTCTGTACTTTGAATTTCTTTATAGGCATTGATAACAAGAACATCAAGGAATAGACTGGCATAGATACTCCTGTCGTTCCTCAATTTCTCTCAATCGATATGACTACCCCACATAAAAACTATAAAAGAAATATTGAGACATTAGGTCCCTCATTTCGGATTTCTGTATC
TGTTCATGAAAGAAAAAATC
Intron 3 GTGGGGACTA ... CTTGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.16 | 211.2 | 50 | 31 |
| A2 | 27.08 | 150.8 | 56 | 10 |
| A3 | 24.67 | 168 | 55 | 18 |
| A4 | 21.21 | 159.8 | 43 | 25 |
| A5 | 29.12 | 53.6 | 22 | 5.6 |
| A6 | 23.88 | 628 | 197 | 41.6 |
| A7 | 25.68 | 764 | 264 | 47.2 |
| A8 | 23.63 | 679 | 210 | 32.4 |
| A9 | 23.14 | 674.4 | 203 | 46.6 |
| A10 | 25.6 | 508.8 | 175 | 34.6 |
>TRINITY_DN103282_c0_g1_i12 from sample A4 / Example spliced isoformCCATTGTTGTTTTTTATTAGTGATTCTATATTGGTCTTGACTCTTGATGCATTTTTTTACCAGTGATTCTATATTGGATGTTTGTCATTGAATGTTTATCAAGTTGAATCCATTTTTTTATGCTGCGAAGATAACTCTCATGTTGATGTGTAATTTACTGATTTATGATCCAAATTCCATGATCTGTGAGGCTTTGTTTA
ATGCATTTCAGTTCTGTTTTGAGTTGTTGTTTGGTTTTCTGCTTGGTGGTTTGAGTTCTGTGTTATGTTTTCTGCCACCAATACATAATTCAGATGAGTTCAAATCCAATTTTATTGATTTGTCAGAATCTTTTGGTCTTGTTTGTAACTCTTTCTAGAATAAGTCTGAGAAGTCTTCTTTTGCTCTCCCTTTTTCCCTT
TTAAATGTCCTATATGCATTCTGAATTTCCATAAGGTACTATACGCTAATTTGCCAGAAGAGAATTATGGAAGCTGCTGCAACATTCCTATTATTTTGCAAAGTGGTCACTAGGTTCTGTCCTAAGCCAGTCCTGCATTTGGGCTCAGCATTAAACTCATGTTCAATTTATTGCATGTGGCCTGAGTTTAAGTTCATTCT
TATTTCAATTTGGGCACAGTCAAGTTGATAGTCAAACGTTCAGGTTTGGTTTAATGGATGACACTTAGTTTTCATTCTATCTTCAATTTGTGCATGTGGCATCTGAACTTCATAAGTATCTGTGGTGTGATAGAACCATATAAATTATTACTATTGGCACTAACTTGCAACTTTGAATGGTTCCATTATTGCAGAGCTCG
GGAGCTTTTCTACTACTTAAAAGGTGGAACGATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCAAGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGA
ATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGA
TATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATACCT
ACTATTTCAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCC
>TRINITY_DN103282_c0_g1_i4 from sample A4 / Example unspliced isoform:CGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGACGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTT
TGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGAGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCA
AGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGGTATTACAAGTGCTTATTAATCAAAGCCTAAAATTGTTATCCCATTGGTAGTATGCAGAAAACTTGACAAGTTTTTCTTTGCTG
ATGCTAGAATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGTAAGTTTCCCAGAAATTGTTTTGCTTGTTTGTCTTATGATTTCTTTTTGGAGGATCCCTGTTTTTGTTTTAG
TTCTTTACTCTGAAACTATGTATTGCTATTGTACCTGTATCTTTGTTTCTACTGACAAAATTGTTTGCATGCTGGCTATTTCAATACGCGTGCCTAAATATCCTCTTTTTGGGCATTGTAGGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTG
GATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATAC
CTACTATTTCAGgtggggactactgttattttagccctttttgatagaaataagtctatacatcaaaagaagatagagatgtttaaagcctatgctactggttatatttaagtctgcctattcttaatttggaagcaattataattttatatagagtgcatatcatacgtttaagtggtggctgaagtctgaattttaag
attctttaaatattgatttttcaaaccgcttttgcttgaaacagCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAAGTGAGTGAT
TAATTGAACAGATGGATTTCTTTTCTGCTTTGCTTGTGCAAATCGGTTATGATGTTACATCTATTAACCATGGATTTCTTACCAGTGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCT
Intron 4 GTAAATGGAT ... AATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.13 | 199 | 0 | 44 |
| A2 | 22.75 | 132.5 | 0 | 39 |
| A3 | 21.89 | 168 | 1 | 47 |
| A4 | 16.94 | 132.5 | 0 | 27 |
| A5 | 13.98 | 74 | 0 | 12 |
| A6 | 21.96 | 409 | 1 | 115 |
| A7 | 17.92 | 440 | 0 | 96 |
| A8 | 18.37 | 338 | 0 | 76 |
| A9 | 18.77 | 373 | 0 | 86 |
| A10 | 20.95 | 351 | 5 | 93 |
>TRINITY_DN44681_c0_g1_i6 from sample A10 / Example spliced isoformGTGTTTGGAGATGATAGGTAGACTCTATTTTTACAATATTTTTTATGAAAGAATTCAAACAATGAAGACGTTAACAACAAGAAAGTTGGAAAGTAGAAAGTGATATTCTCCTGTTCACGACCTCTGAAGATGGAGAAAGTACTCAGCCAGGAAAGCATTGTCCGCTGGTTATTGGTTACGAGTATGCAGTATTTTCAAAT
CTTCGGAAAATCAGTACAGGAAACTGACACCTATTCTGTTGTCGTGACAGCAATGAATGCAGTCCAGCAGCAATCCGTCCCCACAGTGGATTTCGCGGCATCCAAATGAATTTTCTCGCTACCCAGAAAGGATTTCCTCGGCACCCAATTCCACTTTCACCAACTGCAAATAGGCTCTCTTGTCCAAAAGTAACCAGTAG
TTTTCCAAGTTTGAGTACCTCGACGGGATTTCTCTGGTTTCTGAAGATGCGGTTATGGGCAGTGGTGTCGCTGGGCCTGTGCTTGGCAGAGCTCTTGATCAGCGCTGTGACTCATTTGGGTTTTGGGCTTTATTTATTCAGCATTGCAGTGACGAATGACATTGCTGAAATTCTTCACAATCATCGTCTGAAGAGGTTTA
GGATGTGGCAGACGATGGCGGACAGTTACAGTAAGCCGAATATCGTGGTCTCTGAAGGAAGCAGAGATATAGGAAATGGACCCTATTTTGAGGGCTATGAAGTGGCTCCCATTTTGCTGGTTCATGGGATTTTTGGCTTCGGTAAAGGGAAACTGGGTGTAGTGTCGTACTGGGCAGGAGCTGAAAAGAAGGATGACCGT
GTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGGGCTAGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATTGATTATGGCGAAAAACACAGTGCCCAATATGGCCATGCCCGCTTTGGCAAGACTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCAGTACACTTTGTTGGGCACTC
TTGTGGTGTTCAAGTGGTCAGGGTCCTGCACAATATGCTCGCTGAAAAAAAATTCCAGGGGCATGATAACACTTCCGAAGGTTGGGTGCGGAGTATTACCTCTTTATCTGGTGCTCTCAATGGAACAACTCGTGTGTACCTGGATGGAGTGCAGCCAGAAGATGGAAAGACAATCAAGCCCATCTCTCTATTATGGCTGT
TGCGTGTGGGAGTTGTTATCTATGATTGGTTGGACATTGCTTGGTTGAAATACTACTATAACTTTGGGTTTGATCATTTTAATATGACTTGGCGAAAGGTTGGGATTTCTGGGCTTATAGACAGTCTTCGAGGAAATGTTGGACCATTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGTCTACAGGTCTCAGTTGAA
CTCAATACAAAACTCCAGACTTTTCCAAATACCTACTATTTCAGCTATGCTACAAGAAAGACGCGAAAATTGTTTGGAGTCACCATACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTTTTTATCAGGACACTGCAGATGAGCCAGTGGTGTTATCCCAGCAATGTGCAATTTCCTTACAAAGGTTACAATGACAAGGA
TTGGCAAGACAATGATGGAGCATTAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTAAGTCCAGAATTTAAGGATGGTCATTCCTTGCAACCAGGTGTTTGGTATTATACAATTCTGGAAGCTGATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATA
TATTGTACGATAGCATTTTTCATAGATGTCGAAAGCAGATGTCAACTTCAAGATCAATTAGTGCGGTTCCTTCTGTCGATCAGGGAATGGATCATATATGCAGTAATGTGGAGAATTGTATGTGCCAATTATCTATATTTGATCAAAGACAGTAGTGAAACCTGGTCATCTTGTATTTCAAATAAGATTAAAGTTGATAA
GATGTAATAGAGTAACTACTTAGCGAGAGCTGTTCTGTATGCTAGCCATTATCCATGTTGGTTGCAATATTGTTGTGACATATCTTGTAACATGGATGGCTCCAACCATTTTTTCTGTTCATTAGTTATGTTCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTATTACATCATTAGACA
>TRINITY_DN44681_c0_g1_i2 from sample A10 / Example unspliced isoform:TTTGGCAAGACTTATGAGCAAGgtaaatggatatgagatttaagtcatttaactatggaaggtcttccacatgatatctttgttgaagctagaagtattcattgctttggtatgaaattttacagGCTATTATCCTGAATGGGATGAGAATCATCCAGTACACTTTGTTGGGCACTCTTGTGGTGTTCAAGTGGTCAGGG
TCCTGCACAATATGCTCGCTGAAAAAAAATTCCAGGGGCATGATAACACTTCCGAAGGTTGGGTGCGGAGTATTACCTCTTTATCTGGTGCTCTCAATGGAACAACTCGTGTGTACCTGGATGGAGTGCAGCCAGAAGATGGAAAGACAATCAAGCCCATCTCTCTATTATGGCTGTTGCGTGTGGGAGTTGTTATCTAT
GATTGGTTGGACATTGCTTGGTTGAAATACTACTATAACTTTGGGTTTGATCATTTTAATATGACTTGGCGAAAGGTTGGGATTTCTGGGCTTATAGACAGTCTTCGAGGAAATGTTGGACCATTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGTCTACAGGTCTCAGTTGAACTCAATACAAAACTCCAGACTTT
TCCAAATACCTACTATTTCAGCTATGCTACAAGAAAGACGCGAAAATTGTTTGGAGTCACCATACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTTTTTATCAGGACACTGCAGATGAGCCAGTGGTGTTATCCCAGCAATGTGCAATTTCCTTACAAAGGTTACAATGACAAGGATTGGCAAGACAATGATGGAGCAT
TAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTAAGTCCAGAATTTAAGGATGGTCATTCCTTGCAACCAGGTGTTTGGTATTATACAATTCTGGAAGCTGATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATATATTGTACGATAGCATTTTTCA
Intron 5 GTAAGTTTCC ... GGCATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.89 | 88.4 | 3.6 | 13 |
| A2 | 12.71 | 82.6 | 3.6 | 12 |
| A3 | 12.3 | 100.2 | 2.8 | 14 |
| A4 | 10.79 | 99.4 | 4.8 | 12 |
| A5 | 3.56 | 54.2 | 0 | 2 |
| A6 | 3.37 | 259.2 | 0 | 9 |
| A7 | 3.24 | 271.4 | 1.2 | 9 |
| A8 | 4.79 | 182.6 | 1.2 | 9 |
| A9 | 6.09 | 294.4 | 1.2 | 19 |
| A10 | 2.63 | 222.6 | 0 | 6 |
>TRINITY_DN103282_c0_g1_i12 from sample A4 / Example spliced isoformCCATTGTTGTTTTTTATTAGTGATTCTATATTGGTCTTGACTCTTGATGCATTTTTTTACCAGTGATTCTATATTGGATGTTTGTCATTGAATGTTTATCAAGTTGAATCCATTTTTTTATGCTGCGAAGATAACTCTCATGTTGATGTGTAATTTACTGATTTATGATCCAAATTCCATGATCTGTGAGGCTTTGTTTA
ATGCATTTCAGTTCTGTTTTGAGTTGTTGTTTGGTTTTCTGCTTGGTGGTTTGAGTTCTGTGTTATGTTTTCTGCCACCAATACATAATTCAGATGAGTTCAAATCCAATTTTATTGATTTGTCAGAATCTTTTGGTCTTGTTTGTAACTCTTTCTAGAATAAGTCTGAGAAGTCTTCTTTTGCTCTCCCTTTTTCCCTT
TTAAATGTCCTATATGCATTCTGAATTTCCATAAGGTACTATACGCTAATTTGCCAGAAGAGAATTATGGAAGCTGCTGCAACATTCCTATTATTTTGCAAAGTGGTCACTAGGTTCTGTCCTAAGCCAGTCCTGCATTTGGGCTCAGCATTAAACTCATGTTCAATTTATTGCATGTGGCCTGAGTTTAAGTTCATTCT
TATTTCAATTTGGGCACAGTCAAGTTGATAGTCAAACGTTCAGGTTTGGTTTAATGGATGACACTTAGTTTTCATTCTATCTTCAATTTGTGCATGTGGCATCTGAACTTCATAAGTATCTGTGGTGTGATAGAACCATATAAATTATTACTATTGGCACTAACTTGCAACTTTGAATGGTTCCATTATTGCAGAGCTCG
GGAGCTTTTCTACTACTTAAAAGGTGGAACGATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCAAGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGA
ATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGA
TATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATACCT
ACTATTTCAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCC
>TRINITY_DN103282_c0_g1_i4 from sample A4 / Example unspliced isoform:CGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGACGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTT
TGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGAGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCA
AGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGGTATTACAAGTGCTTATTAATCAAAGCCTAAAATTGTTATCCCATTGGTAGTATGCAGAAAACTTGACAAGTTTTTCTTTGCTG
ATGCTAGAATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAgtaagtttcccagaaattgttttgcttgtttgtcttatgatttctttttggaggatccctgtttttgttttag
ttctttactctgaaactatgtattgctattgtacctgtatctttgtttctactgacaaaattgtttgcatgctggctatttcaatacgcgtgcctaaatatcctctttttgggcattgtagGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTG
GATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATAC
CTACTATTTCAGGTGGGGACTACTGTTATTTTAGCCCTTTTTGATAGAAATAAGTCTATACATCAAAAGAAGATAGAGATGTTTAAAGCCTATGCTACTGGTTATATTTAAGTCTGCCTATTCTTAATTTGGAAGCAATTATAATTTTATATAGAGTGCATATCATACGTTTAAGTGGTGGCTGAAGTCTGAATTTTAAG
ATTCTTTAAATATTGATTTTTCAAACCGCTTTTGCTTGAAACAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAAGTGAGTGAT
TAATTGAACAGATGGATTTCTTTTCTGCTTTGCTTGTGCAAATCGGTTATGATGTTACATCTATTAACCATGGATTTCTTACCAGTGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCT
Intron 6 GTATTACAAG ... CTGATGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.08 | 65 | 21.7 | 2.3 |
| A2 | 23.8 | 38.7 | 13.7 | 2.7 |
| A3 | 22.58 | 39.7 | 14 | 1.3 |
| A4 | 25.11 | 26.7 | 9.7 | 6.3 |
| A5 | 18.52 | 13 | 3.3 | 0 |
| A6 | 20.99 | 78.3 | 24.7 | 3.3 |
| A7 | 27.11 | 49.7 | 24.7 | 0 |
| A8 | 24.31 | 51.3 | 20.7 | 2 |
| A9 | 22.05 | 80.3 | 29.3 | 2 |
| A10 | 31.23 | 39.3 | 24.7 | 0 |
>TRINITY_DN103282_c0_g1_i12 from sample A4 / Example spliced isoformCCATTGTTGTTTTTTATTAGTGATTCTATATTGGTCTTGACTCTTGATGCATTTTTTTACCAGTGATTCTATATTGGATGTTTGTCATTGAATGTTTATCAAGTTGAATCCATTTTTTTATGCTGCGAAGATAACTCTCATGTTGATGTGTAATTTACTGATTTATGATCCAAATTCCATGATCTGTGAGGCTTTGTTTA
ATGCATTTCAGTTCTGTTTTGAGTTGTTGTTTGGTTTTCTGCTTGGTGGTTTGAGTTCTGTGTTATGTTTTCTGCCACCAATACATAATTCAGATGAGTTCAAATCCAATTTTATTGATTTGTCAGAATCTTTTGGTCTTGTTTGTAACTCTTTCTAGAATAAGTCTGAGAAGTCTTCTTTTGCTCTCCCTTTTTCCCTT
TTAAATGTCCTATATGCATTCTGAATTTCCATAAGGTACTATACGCTAATTTGCCAGAAGAGAATTATGGAAGCTGCTGCAACATTCCTATTATTTTGCAAAGTGGTCACTAGGTTCTGTCCTAAGCCAGTCCTGCATTTGGGCTCAGCATTAAACTCATGTTCAATTTATTGCATGTGGCCTGAGTTTAAGTTCATTCT
TATTTCAATTTGGGCACAGTCAAGTTGATAGTCAAACGTTCAGGTTTGGTTTAATGGATGACACTTAGTTTTCATTCTATCTTCAATTTGTGCATGTGGCATCTGAACTTCATAAGTATCTGTGGTGTGATAGAACCATATAAATTATTACTATTGGCACTAACTTGCAACTTTGAATGGTTCCATTATTGCAGAGCTCG
GGAGCTTTTCTACTACTTAAAAGGTGGAACGATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCAAGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGA
ATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGA
TATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATACCT
ACTATTTCAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCC
>TRINITY_DN103282_c0_g1_i4 from sample A4 / Example unspliced isoform:CGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGACGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTT
TGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGAGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCA
AGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGgtattacaagtgcttattaatcaaagcctaaaattgttatcccattggtagtatgcagaaaacttgacaagtttttctttgctg
atgctagAATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGTAAGTTTCCCAGAAATTGTTTTGCTTGTTTGTCTTATGATTTCTTTTTGGAGGATCCCTGTTTTTGTTTTAG
TTCTTTACTCTGAAACTATGTATTGCTATTGTACCTGTATCTTTGTTTCTACTGACAAAATTGTTTGCATGCTGGCTATTTCAATACGCGTGCCTAAATATCCTCTTTTTGGGCATTGTAGGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTG
GATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATAC
CTACTATTTCAGGTGGGGACTACTGTTATTTTAGCCCTTTTTGATAGAAATAAGTCTATACATCAAAAGAAGATAGAGATGTTTAAAGCCTATGCTACTGGTTATATTTAAGTCTGCCTATTCTTAATTTGGAAGCAATTATAATTTTATATAGAGTGCATATCATACGTTTAAGTGGTGGCTGAAGTCTGAATTTTAAG
ATTCTTTAAATATTGATTTTTCAAACCGCTTTTGCTTGAAACAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAAGTGAGTGAT
TAATTGAACAGATGGATTTCTTTTCTGCTTTGCTTGTGCAAATCGGTTATGATGTTACATCTATTAACCATGGATTTCTTACCAGTGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCT
Intron 7 GTAATCTAAT ... CTTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.07 | 115.5 | 35 | 19 |
| A2 | 20.33 | 103 | 29 | 23 |
| A3 | 18.54 | 104.5 | 32 | 15 |
| A4 | 19.38 | 86.5 | 15 | 26 |
| A5 | 18.26 | 36.5 | 8 | 8 |
| A6 | 20.62 | 281 | 79 | 65 |
| A7 | 21.27 | 251 | 70 | 63 |
| A8 | 24.73 | 205.5 | 68 | 64 |
| A9 | 19.95 | 268 | 65 | 66 |
| A10 | 23.57 | 204 | 72 | 52 |
>TRINITY_DN110505_c0_g2_i4 from sample A2 / Example spliced isoformCGACCTCTGAAGATGGAGAAAGTACTCAGCCAGGAAAGCATTTTCCGCTGGTTATTGGTTACGAGTATGCAGTATTTTCAAATCTTCGGAAAATCAGTACAGGAAACTGACACCTATTCTGTTGTCGTGACAGCAATGAATGCAGTCCAGCAGCAATCCGTCCCCACAGTGGATTTCGCGGCATCCAAATGAATTTTCTC
GCTACCCAGAAAGGATTTCCTCGGCACCCAATTCCACTTTCACCAACTGCAAATAGGCTCTCTTGTCCAAAAGTAACCAGTAGTTTTCCAAGTTTGAGTACCTCGACGGGATTTCTCTGGTTTCTGAAGATGCGGTTATGGGCAGTGGTGTCGCTGGGCCTGTGCTTGGCAGAGCTCTTGATCAGCGCTGTGACTCATTT
GGGTTTTGGGCTTTATTTATTCAGCATTGCAGTGACGAATGACATTGCTGAAATTCTTCACAATCATCGTCTGAAGAGGTTTAGGATGTGGCAGACGATGGCGGACAGTTACAGTAAGCCGAATATCGTGGTCTCTGAAGGAAGCAGAGATATAGGAAATGGACCCTATTTTGAGGGCTATGAAGTGGCTCCCATTTTGC
TGGTTCATGGGATTTTTGGCTTCGGTAAAGGGAAACTGGGTGTAGTGTCGTACTGGGCAGGAGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGGGCTAGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATTGATTATGGCGAAAAACACAGTGCCCAATATGGC
CATGCCCGCTTTGGCAAGACTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCAGTACACTTTGTTGGGCACTCTTGTGGTGTTCAAGTGGTCAGGGTCCTGCACAATATGCTCGCTGAAAAAAAATTCCAGGGGCATGATAACACTTCCGAAGGTTGGGTGCGGAGTATTACCTCTTTATCTGGTGCTCT
CAATGGAACAACTCGTGTGTACCTGGATGGAGTGCAGCCAGAAGATGGAAAGACAATCAAGCCCATCTCTCTATTATGGCTGTTGCGTGTGGGAGTTGTTATCTATGATTGGTTGGACATTGCTTGGTTGAAATACTACTATAACTTTGGGTTTGATCATTTTAATATGACTTGGCGAAAGGTTGGGATTTCTGGGCTTA
TAGACAGTCTTCGAGGAAATGTTGGACCATTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGTCTACAGGTCTCAGTTGAACTCAATACAAAACTCCAGACTTTCCCAAATACCTACTATTTCAGCTATGCTACAAGAAAGACGCGAAAATTGTTTGGAGTCACCATACCTTCAAGTCTGTTTGGAATTCATCCTCTT
CTTTTTATCAGGACACTGCAGATGAGCCAGTGGTGTTATCCCAGCAATGTGCAATTTCCTTACAAAGGTTACAATGACAAGGATTGGCAAGACAATGATGGAGCATTAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTAAGTCCAGAATTTAAGGATGGTCATTCCTTGCAACC
AGGTGTTTGGTATTATACAATTCTGGAAGCTGATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATATATTGTACGATAGCATTTTTCATAGATGTCGAAAGCAGATGTCAACTTCAAGATCAATTAGTGCGGTTCCTTCTGTCGATCAGGGAATGGATCATATATGCAGTAATGTGGAGAATT
GTATGTGCCAATTATCTATATTTGATCAAAGACAGTAGTGAAACCTGGTCATCTTGTATTTCAAATAAGATTAAAGTTGATAAGATGTAATAGAGTAACTACTTAGCGAGAGCTGTTCTGTATGCTAGCCATTATCCATGTTGGTTGCAATATTGTTGTGACATATCTTGTAACATGGATGGCTCCAACCATTTTTTCTG
TTCATTAGTTATGTTCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTATTACATCATTAGACAAAAAAA
>TRINITY_DN110505_c0_g2_i3 from sample A2 / Example unspliced isoform:CGACCTCTGAAGATGGAGAAAGTACTCAGCCAGGAAAGCATTTTCCGCTGGTTATTGGTTACGAGTATGCAGTATTTTCAAATCTTCGGAAAATCAGTACAGGAAACTGACACCTATTCTGTTGTCGTGACAGCAATGAATGCAGTCCAGCAGCAATCCGTCCCCACAGTGGATTTCGCGGCATCCAAATGAATTTTCTC
GCTACCCAGAAAGGATTTCCTCGGCACCCAATTCCACTTTCACCAACTGCAAATAGGCTCTCTTGTCCAAAAGTAACCAGTAGTTTTCCAAGTTTGAGTACCTCGACGGGATTTCTCTGGTTTCTGAAGATGCGGTTATGGGCAGTGGTGTCGCTGGGCCTGTGCTTGGCAGAGCTCTTGATCAGCGCTGTGACTCATTT
GGGTTTTGGGCTTTATTTATTCAGCATTGCAGTGACGAATGACATTGCTGAAATTCTTCACAATCATCGTCTGAAGAGGTTTAGGATGTGGCAGACGATGGCGGACAGTTACAGTAAGCCGAATATCGTGGTCTCTGAAGGAAGCAGAGATATAGGAAATGGACCCTATTTTGAGGGCTATGAAGTGGCTCCCATTTTGC
TGGTTCATGGGATTTTTGGCTTCGGTAAAGGGAAACTGGGTGTAGTGTCGTACTGGGCAGGAGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGGGCTAGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATTGATTATGGCGAAAAACACAGTGCCCAATATGGC
CATGCCCGCTTTGGCAAGACTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCAGTACACTTTGTTGGGCACTCTTGTGGTGTTCAAGTGGTCAGGGTCCTGCACAATATGCTCGCTGAAAAAgtaatctaatcacttattagttgagcctaaatttgctttcccattggtagtatgcagaaaagttcgca
agtttttcctttactgatgctaaagtatctttatgcagAAATTCCAGGGGCATGATAACACTTCCGAAGGTTGGGTGCGGAGTATTACCTCTTTATCTGGTGCTCTCAATGGAACAACTCGTGTGTACCTGGATGGAGTGCAGCCAGAAGATGGAAAGACAATCAAGCCCATCTCTCTATTATGGCTGTTGCGTGTGGGA
GTTGTTATCTATGATTGGTTGGACATTGCTTGGTTGAAATACTACTATAACTTTGGGTTTGATCATTTTAATATGACTTGGCGAAAGGTTGGGATTTCTGGGCTTATAGACAGTCTTCGAGGAAATGTTGGACCATTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGTCTACAGGTCTCAGTTGAACTCAATACAAA
ACTCCAGACTTTCCCAAATACCTACTATTTCAGCTATGCTACAAGAAAGACGCGAAAATTGTTTGGAGTCACCATACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTTTTTATCAGGACACTGCAGATGAGCCAGTGGTGTTATCCCAGCAATGTGCAATTTCCTTACAAAGGTTACAATGACAAGGATTGGCAAGACA
ATGATGGAGCATTAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTAAGTCCAGAATTTAAGGATGGTCATTCCTTGCAACCAGGTGTTTGGTATTATACAATTCTGGAAGCTGATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATATATTGTACGAT
AGCATTTTTCATAGATGTCGAAAGCAGATGTCAACTTCAAGATCAATTAGTGCGGTTCCTTCTGTCGATCAGGGAATGGATCATATATGCAGTAATGTGGAGAATTGTATGTGCCAATTATCTATATTTGATCAAAGACAGTAGTGAAACCTGGTCATCTTGTATTTCAAATAAGATTAAAGTTGATAAGATGTAATAGA
GTAACTACTTAGCGAGAGCTGTTCTGTATGCTAGCCATTATCCATGTTGGTTGCAATATTGTTGTGACATATCTTGTAACATGGATGGCTCCAACCATTTTTTCTGTTCATTAGTTATGTTCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTATTACATCATTAGACAAAAAAA
Intron 8 GTGAGTGATT ... TTCTTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.24 | 119 | 13.6 | 15.6 |
| A2 | 10 | 63 | 7 | 6.9 |
| A3 | 14.17 | 103 | 17 | 8.6 |
| A4 | 22.22 | 77 | 22 | 18.1 |
| A5 | 22.73 | 34 | 10 | 2.6 |
| A6 | 7.78 | 366 | 30.9 | 15.6 |
| A7 | 8.89 | 350 | 34.1 | 8.7 |
| A8 | 11.29 | 422 | 53.7 | 14 |
| A9 | 9.98 | 393 | 43.6 | 8.9 |
| A10 | 14.25 | 232 | 38.6 | 6.9 |
>TRINITY_DN103282_c0_g1_i5 from sample A4 / Example spliced isoformCGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGACGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTT
TGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGAGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCA
AGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGAATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCT
CAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTA
TAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATACCTACTATTTCAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTT
CTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAATGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCTCAGCCCCATCCCCACTGCTGGCTAAGTCTAGAATTTAAGGATGGTCATACGTTGCAACC
AGGTGTTTGGTACTATACAATTGTGGAAGCTGATCACATTCTTTTCATTATCAACCGAGAAAGAGCAGGGGTACAGTTCGATATATTGTACGATAGCATTTTTCAAAGATGTCGAAAGCAGATGTCAAGAGCAATTAGTGCTGTTCCTTCTGTCGATGAGGGATTGGGTCATATATGCAGTAATGTGGAGAATTGTATGT
GCCAATTATCTATATTTGATCAAAGACAGTAGTGAAACCTGGTCATCTTGTATTTCAAATAAGATTAAAGTTGATAAGATGTAATAGAGTAACTACTTAGCGAGAGCTGTTCTGTATGCTAGCCATTATCCATGTTGGTTGCAATATTGTTGTGACATATCTTGTAACATGGATGGCTCCAACCATTTTTTCTGTTCATT
AGTTATGTTCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTATTACATCATTAGACAATATCGATGTGATGTGAGTGTGGTTTGTTAGCATTAATTTATTTTTTGTTTTTATTGAGGTCAGCTGAGCAGTGGTCAAGCAGTAAATTAATAGTTAAATTAGTGGGAGTTTTTCATCAGTGACCTAG
GTTTGATTCT
>TRINITY_DN103282_c0_g1_i4 from sample A4 / Example unspliced isoform:CGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCAAATGGAT
TTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGGGCTTTAT
ATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGACGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGATTTT
TGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGAGCTCGAGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCA
AGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGGTATTACAAGTGCTTATTAATCAAAGCCTAAAATTGTTATCCCATTGGTAGTATGCAGAAAACTTGACAAGTTTTTCTTTGCTG
ATGCTAGAATTATCTCTATGCAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGTAAGTTTCCCAGAAATTGTTTTGCTTGTTTGTCTTATGATTTCTTTTTGGAGGATCCCTGTTTTTGTTTTAG
TTCTTTACTCTGAAACTATGTATTGCTATTGTACCTGTATCTTTGTTTCTACTGACAAAATTGTTTGCATGCTGGCTATTTCAATACGCGTGCCTAAATATCCTCTTTTTGGGCATTGTAGGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTG
GATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTTCCAAATAC
CTACTATTTCAGGTGGGGACTACTGTTATTTTAGCCCTTTTTGATAGAAATAAGTCTATACATCAAAAGAAGATAGAGATGTTTAAAGCCTATGCTACTGGTTATATTTAAGTCTGCCTATTCTTAATTTGGAAGCAATTATAATTTTATATAGAGTGCATATCATACGTTTAAGTGGTGGCTGAAGTCTGAATTTTAAG
ATTCTTTAAATATTGATTTTTCAAACCGCTTTTGCTTGAAACAGCTATGCTACGAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAAgtgagtgat
taattgaacagatggatttcttttctgctttgcttgtgcaaatcggttatgatgttacatctattaaccatggatttcttaccagTGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCT
Intron 9 GTAAGAGCAG ... AGATTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.03 | 103.4 | 29 | 32.2 |
| A2 | 20.45 | 67 | 16 | 18 |
| A3 | 24.74 | 75.2 | 26 | 23 |
| A4 | 29.6 | 78.3 | 29 | 36.2 |
| A5 | 33.11 | 33.1 | 14 | 18.5 |
| A6 | 25.99 | 419.4 | 147 | 145.6 |
| A7 | 27.94 | 345.2 | 126.2 | 138.8 |
| A8 | 29.56 | 491 | 200.2 | 208.6 |
| A9 | 24.82 | 400.2 | 139.9 | 123 |
| A10 | 30.37 | 274.2 | 113.9 | 123.9 |
>TRINITY_DN110898_c0_g1_i9 from sample A3 / Example spliced isoformCTCTATTTTTACAATATTTTTTATGAAAGAATTCAAACAATGAAGACGTTAACAACAAGAAAGTTGGAAAGTAGAAAGTGATATTCTCCTGTTCACGACCTCTGAAGATGGAGAAAGTACTCAGCCAGGAAAGCATTTTCCGCTGGTTATTGGTTACGAGTATGCAGTATTTTCAAATCTTCGGAAAATCAGTACAGGAA
ACTGACACCTATTCTGTTGTCGTGACAGCAATGAATGCAGTCCAGCAGCAATCCGTCCCCACAGTGGATTTCGCGGCATCCAAATGAATTTTCTCGCTACCCAGAAAGGATTTCCTCGGCACCCAATTCCACTTTCACCAACTGCAAATAGGCTCTCTTGTCCAAAAGTAACCAGTAGTTTTCCAAGTTTGAGTACCTCG
ACGGGATTTCTCTGGTTTCTGAAGATGCGGTTATGGGCAGTGGTGTCGCTGGGCCTGTGCTTGGCAGAGCTCTTGATCAGCGCTGTGACTCATTTGGGTTTTGGGCTTTATTTATTCAGCATTGCAGTGACGAATGACATTGCTGAAATTCTTCACAATCATCGTCTGAAGAGGTTTAGGATGTGGCAGACGATGGCGGA
CAGTTACAGTAAGCCGAATATCGTGGTCTCTGAAGGAAGCAGAGATATAGGAAATGGACCCTATTTTGAGGGCTATGAAGTGGCTCCCATTTTGCTGGTTCATGGGATTTTTGGCTTCGGTAAAGGGAAACTGGGTGTAGTGTCGTACTGGGCAGGAGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTT
CTCTGACAAGCGTTTATGATAGGGCTAGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATTGATTATGGCGAAAAACACAGTGCCCAATATGGCCATGCCCGCTTTGGCAAGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCAGTACACTTTGTTGGGCACTCTTGTGGTGTTCAAGTGGTCAGG
GTCCTGCACAATATGCTCGCTGAAAAAAAATTCCAGGGGCATGATAACACTTCCGAAGGTTGGGTGCGGAGTATTACCTCTTTATCTGGTGCTCTCAATGGAACAACTCGTGTGTACCTGGATGGAGTGCAGCCAGAAGATGGAAAGACAATCAAGCCCATCTCTCTATTATGGCTGTTGCGTGTGGGAGTTGTTATCTA
TGATTGGTTGGACATTGCTTGGTTGAAATACTACTATAACTTTGGGTTTGATCATTTTAATATGACTTGGCGAAAGGTTGGGATTTCTGGGCTTATAGACAGTCTTCGAGGAAATGTTGGACCATTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGTCTACAGGTCTCAGTTGAACTCAATACAAAACTCCAGACTT
TTCCAAATACCTACTATTTCAGCTATGCTACAAGAAAGACGCGAAAATTGTTTGGAGTCACCATACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTTTTTATCAGGACACTGCAGATGAGCCAGTGGTGTTATCCCAGCAATGTGCAATTTCCTTACAAAGGTTACAATGACAAGGATTGGCAAGACAATGATGGAGCA
TTAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTAAGTCCAGAATTTAAGGATGGTCATTCCTTGCAACCAGGTGTTTGGTATTATACAATTCTGGAAGCTGATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATATATTGTACGATAGCATTTTTCA
TAGATGTCGAAAGCAGATGTCAACTTCAAGATCAATTAGTGCGGTTCCTTCTGTCGATCAGGGAATGGATCATATATGCAGTAATGTGGAGAATTGTATGTGCCAATTATCTATATTTGATCAAAGACAGTAGTGAAACCTGGTCATCTTGTATTTCAAATAAGATTAAAGTTGATAAGATGTAATAGAGTAACTACTTA
GCGAGAGCTGTTCTGTATGCTAGCCATTATCCATGTTGGTTGCAATATTGTTGTGACATATCTTGTAACATGGATGGCTCCAACCATTTTTTCTGTTCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTATTACATCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTAT
TACATCATTAGTTATGATCACCACATA
>TRINITY_DN110898_c0_g1_i3 from sample A3 / Example unspliced isoform:CTCTATTTTTACAATATTTTTTATGAAAGAATTCAAACAATGAAGACGTTAACAACAAGAAAGTTGGAAAGTAGAAAGTGATATTCTCCTGTTCACGACCTCTGAAGATGGAGAAAGTACTCAGCCAGGAAAGCATTTTCCGCTGGTTATTGGTTACGAGTATGCAGTATTTTCAAATCTTCGGAAAATCAGTACAGGAA
ACTGACACCTATTCTGTTGTCGTGACAGCAATGAATGCAGTCCAGCAGCAATCCGTCCCCACAGTGGATTTCGCGGCATCCAAATGAATTTTCTCGCTACCCAGAAAGGATTTCCTCGGCACCCAATTCCACTTTCACCAACTGCAAATAGGCTCTCTTGTCCAAAAGTAACCAGTAGTTTTCCAAGTTTGAGTACCTCG
ACGGGATTTCTCTGGTTTCTGAAGATGCGGTTATGGGCAGTGGTGTCGCTGGGCCTGTGCTTGGCAGAGCTCTTGATCAGCGCTGTGACTCATTTGGGTTTTGGGCTTTATTTATTCAGCATTGCAGTGACGAATGACATTGCTGAAATTCTTCACAATCATCGTCTGAAGAGGTTTAGGATGTGGCAGACGATGGCGGA
CAGTTACAGTAAGCCGAATATCGTGGTCTCTGAAGGAAGCAGAGATATAGGAAATGGACCCTATTTTGAGGGCTATGAAGTGGCTCCCATTTTGCTGGTTCATGGGATTTTTGGCTTCGGTAAAGGGAAACTGGGTGTAGTGTCGTACTGGGCAGGAGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTT
CTCTGACAAGCGTTTATGATAGGGCTAGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATTGATTATGGCGAAAAACACAGTGCCCAATATGGCCATGCCCGCTTTGGCAAGACTTATGAACAAGGCTATTATCCTGAATGGGATGAGAATCATCCAGTACACTTTGTTGGGCACTCTTGTGGTGTTCAAGTGGTCAGG
GTCCTGCACAATATGCTCGCTGAAAAAAAATTCCAGGGGCATGATAACACTTCCGAAGGTTGGGTGCGGAGTATTACCTCTTTATCTGGTGCTCTCAATGGAACAACTCGTGTGTACCTGGATGGAGTGCAGCCAGAAGATGGAAAGACAATCAAGCCCATCTCTCTATTATGGCTGTTGCGTGTGGGAGTTGTTATCTA
TGATTGGTTGGACATTGCTTGGTTGAAATACTACTATAACTTTGGGTTTGATCATTTTAATATGACTTGGCGAAAGGTTGGGATTTCTGGGCTTATAGACAGTCTTCGAGGAAATGTTGGACCATTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGTCTACAGGTCTCAGTTGAACTCAATACAAAACTCCAGACTT
TTCCAAATACCTACTATTTCAGCTATGCTACAAGAAAGACGCGAAAATTGTTTGGAGTCACCATACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTTTTTATCAGGACACTGCAGATGAGCCAGTGGTGTTATCCCAGCAATGTGCAATTTCCTTACAAAGGTTACAATGACAAGGATTGGCAAGACAATGATGGAGCA
TTAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTAAGTCCAGAATTTAAGGATGGTCATTCCTTGCAACCAGGTGTTTGgtaagagcagcaaataacttgtgtcaagctttgagaaagacctacttaagatttctaatttgtgagattgacagGTATTATACAATTCTGGAAGCT
GATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATATATTGTACGATAGCATTTTTCATAGATGTCGAAAGCAGATGTCAACTTCAAGATCAATTAGTGCGGTTCCTTCTGTCGATCAGGGAATGGATCATATATGCAGTAATGTGGAGAATTGTATGTGCCAATTATCTATATTTGATCAAAG
ACAGTAGTGAAACCTGGTCATCTTGTATTTCAAATAAGATTAAAGTTGATAAGATGTAATAGAGTAACTACTTAGCGAGAGCTGTTCTGTATGCTAGCCATTATCCATGTTGGTTGCAATATTGTTGTGACATATCTTGTAACATGGATGGCTCCAACCATTTTTTCTGTTCATTAGTTATGATCACCACATACGCTTTT
CACATTGGCTTTGATTTTATTACATCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTATTACATCATTAGTTATGATCACCACATA
Intron 10 GTGAGTGCTT ... TTCTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.83 | 133 | 0 | 35 |
| A2 | 20.41 | 78 | 0 | 20 |
| A3 | 17.03 | 126.7 | 0 | 26 |
| A4 | 15.38 | 88 | 0 | 16 |
| A5 | 24.19 | 47 | 0 | 15 |
| A6 | 17.57 | 450.3 | 0 | 96 |
| A7 | 19.97 | 477 | 0 | 119 |
| A8 | 17.88 | 569.7 | 2 | 124 |
| A9 | 15.84 | 520.7 | 1 | 98 |
| A10 | 17.84 | 327 | 1 | 71 |
>TRINITY_DN45557_c0_g1_i3 from sample A7 / Example spliced isoformCTCTATTTTTACAATATTTTTTATGAAAGAATTCAAACAATGAAGACGTTAACAACAAGAAAGTTGGAAAGTAGAAAGTGATATTCTCCTGTTCACGACCTCTGAAGATGGAGAAAGTACTCAGCCAGCAATGAATGCAGTCCAGCAGCAATCCGTCCCCACAGTGGATTTCGCGGCATCCAAATGAATTTTCTCGCTAC
CCAGAAAGGATTTCCTCGGCACCCAATTCCACTTTCACCAACTGCAAATAGGCTCTCTTGTCCAAAAGTAACCAGTAGTTTTCCAAGTTTGAGTACCTCGACGGGATTTCTCTGGTTTCTGAAGATGCGGTTATGGGCAGTGGTGTCGCTGGGCCTGTGCTTGGCAGAGCTCTTGATCAGCGCTGTGACTCATTTGGGTT
TTGGGCTTTATTTATTCAGCATTGCAGTGACGAATGACATTGCTGAAATTCTTCACAATCATCGTCTGAAGAGGTTTAGGATGTGGCAGACGATGGCGGACAGTTACAGTAAGCCGAATATCGTGGTCTCTGAAGGAAGCAGAGATATAGGAAATGGACCCTATTTTGAGGGCTATGAAGTGGCTCCCATTTTGCTGGTT
CATGGGATTTTTGGCTTCGGTAAAGGGAAACTGGGTGTAGTGTCGTACTGGGCAGGAGCTGAAAAGAAGGATGACCGTGTGCTTGTCCCTGACTTGGGTTCTCTGACAAGCGTTTATGATAGGGCTAGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATTGATTATGGCGAAAAACACAGTGCCCAATATGGCCATGC
CCGCTTTGGCAAGACTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCAGTACACTTTGTTGGGCACTCTTGTGGTGTTCAAGTGGTCAGGGTCCTGCACAATATGCTCGCTGAAAAAAAATTCCAGGGGCATGATAACACTTCCGAAGGTTGGGTGCGGAGTATTACCTCTTTATCTGGTGCTCTCAATG
GAACAACTCGTGTGTACCTGGATGGAGTGCAGCCAGAAGATGGAAAGACAATCAAGCCCATCTCTCTATTATGGCTGTTGCGTGTGGGAGTTGTTATCTATGATTGGTTGGACATTGCTTGGTTGAAATACTACTATAACTTTGGGTTTGATCATTTTAATATGACTTGGCGAAAGGTTGGGATTTCTGGGCTTATAGAC
AGTCTTCGAGGAAATGTTGGACCATTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGTCTACAGGTCTCAGTTGAACTCAATACAAAACTCCAGACTTTCCCAAATACCTACTATTTCAGCTATGCTACAAGAAAGACGCGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTTTT
TATCAGGACACTGCAGATGAGCCAGTGGTGTTATCCCAGCAATGTGCAATTTCCTTACAAAGGTTACAATGACAAGGATTGGCAAGACAATGATGGAGCATTAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTAAGTCCAGAATTTAAGGATGGTCATTCCTTGCAACCAGGTG
TTTGGTATTATACAATTCTGGAAGCTGATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATATATTGTACGATAGCATTTTTCATAGATGTCGAAAGCAGATGTCAACTTCAAGATCAATTAGTGCGGTTCCTTCTGTCGATCAGGGAATGGATCATATATGCAGTAATGTGGAGAATTGTATG
TGCCAATTATCTATATTTGATCAAAGACAGTAGTGAAACCTGGTCATCTTGTATTTCAAATAAGATTAAAGTTGATAAGATGTAATAGAGTAACTACTTAGCGAGAGCTGTTCTGTATGCTAGCCATTATCCATGTTGGTTGCAATATTGTTGTGACATATCTTGTAACATGGATGGCTCCAACCATTTTTTCTGTTCAT
TAGTTATGTTCATTAGTTATGATCACCACATACGCTTTTCACATTGGCTTTGATTTTATTACATCATTA
>TRINITY_DN45557_c0_g1_i11 from sample A7 / Example unspliced isoform:CTTACAAAGGTTACAAgtgagtgcttgattgaacagacagatttctttcttgctttgctagtgctatgggttatggcgttacttgtattaaccctgaatttctttccagTGACAAGGATTGGCAAGACAATGATGGAGCATTAAACACAATCTCAATGCTTTATCCCCGCTTTCCTGAGCCCCATCCCCATTGCTGGCTA
AGTCCAGAATTTAAGGATGGTCATTCCTTGCAACCAGGTGTTTGGTAAGAGCAGCAAATAACTTGTGTCAAGCTTTGAGAAAGACCTACTTAAGATTTCTAATTTGTGAGATTGACAGGTATTATACAATTCTGGAAGCTGATCACGTTCTATTCGTTATCAATCGAGAAAGAGCAGGGGTTCAATTCGATATATTGTAC
GATAGCATTTTTCA
Intron 11 GTGAGTCTCA ... TTGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.28 | 139.4 | 9.2 | 31 |
| A2 | 17.38 | 124 | 14.8 | 26 |
| A3 | 18.45 | 151 | 9.8 | 34 |
| A4 | 14.56 | 123.8 | 16.2 | 21 |
| A5 | 15.63 | 70.4 | 12.4 | 13 |
| A6 | 19.58 | 262 | 11.6 | 63.4 |
| A7 | 17.07 | 293 | 13.2 | 60 |
| A8 | 22.97 | 154.2 | 4.6 | 45.6 |
| A9 | 15.53 | 338.6 | 14 | 62 |
| A10 | 14.37 | 251.2 | 10 | 42 |
>TRINITY_DN110505_c0_g2_i8 from sample A2 / Example spliced isoformATTCACTCGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCA
AATGGATTTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGG
GCTTTATATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGA
TTTTTGGCTTTGGAAAAGGGAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTTCCTGATTTGGGTTCTCTGACAAGCGTTTATGATAGGGCTAGGGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTT
GGCAAGACTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGAAATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAAC
TCGTGTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGATATTGCTTGGCTGAAAAATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTC
TAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTCCCAAATACCTACTATTTCAGCTATGCTACTAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGG
ACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAATGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCCGCTTTCCTCAGCCCCATCCCCACTGCTGGCTAAGTCTAGAATTTAAGGATGGTCATACGTTGCAACCAGGTGTTTGGTA
CTATACAATTGTGGAAGCTGATCACATTCTTTTCATTATCAACCGAGAAAGAGCAGGGGTACAGTTCGATATATTGTACGATAGCATTTTTCAAAGATGTCGAAAGCAGATGTCAAGAGCAATTAGTGCTGTTCCTTCTGTCGATGAGGGATTGGGTCATATATGCAGTAGTGTGGAGAATTGTGTGTGCCACTTATCTA
GATTTGATCACAGACAGTAGTGAAATCTGGTCATCTTGTATTTCAAAGAAGATAAAAAGTTATTTTTTAACAGCCTCCCCAATACAATGTAGGAGGCTGTTTACTTCATTCAAATTTCAATTCATGAGGCGAGTATTGATTTTACCTCTTATGGCATGATTGTCTGTACTTTGAATTTCTTTATAGGCATTGATAACAAG
AACATCAAGGAATAG
>TRINITY_DN110505_c0_g2_i2 from sample A2 / Example unspliced isoform:ATTCACTCGTTTTCGAAACCCAGGTGAGAGGAGATCTCAATTCTCCTCGAAACCTCGGAAAATCATTACAGGAAACTTCCACACAGCCCCATAGGTCACAGTATCGATCCCGACATCCGATCTATTACTCCGACTTGTTACGATAGCAATGAATGCAGTCTAGAAGCAATCCGGCACCCGATTGCATTTCTAGGCACCCA
AATGGATTTTCTCCACACCCAAATGAATTTTAGCCATCTGCATATCGGTTTCGTGTCCAAGAATGAACTGTAGATCCTGGGTTTGAGTATCTCGAAGGCATTTCCCCTGATTTTCTGAAGATGCGGTTATGGGCAGTAGTGTCTGTAGGTCTGTGCTGTGCAGAGCTATTGACGAGCGCTGTGACTCATTTGGTTTATGG
GCTTTATATATTCAGCTCTGCGGTGGTCTTTGACATTGTTGAAATTCTTAATAATCATCGCCCGAAGAGGCTGAGGCTATGGGAGACGGTGGCGGATAGTTACAGTAAGCCGAATATTGTGGCCTCTGGGAGCAGAGATATAGGAAATGGACCCTATTTTGGGGGCTATGAAGTGGCTCCCATTGTGTTGGTTCATGGGA
TTTTTGGCTTTGGAAAAGGGgtgagtctcaattcccaatgaggtgaagtttaagaccaacccagtgaaagcctttcaggaccaaataaggcctttaggaccttaatctagaaggattggcctgacaaaagataacccttttgattagtattttacccgatggattttatttttagcacctttctcaaaagattcatgagg
agtcaagaccttactggatatacctatttttttaatgacgttaggaccttacctggttttatcttcgggcttcttattaatggatattgttggttgcagAAACTGGGTGGAATGTCGTACTGGGCAGGGGCTGAAAAGAAGGATGACCGTGTGCTTGTTCCTGATTTGGGTTCTCTGACAAGCGTTTATGATAGGGCTAG
GGAGCTTTTCTACTACTTAAAAGGTGGAACAATAGATTATGGAGAAGAACACAGTGCCCAGTATGGCCATGCCCGCTTTGGCAAGACTTATGAGCAAGGCTATTATCCTGAATGGGATGAGAATCATCCGTTACACTTTGTTGGGCACTCTGCTGGTGTTCAAGTGGTCAGGGTCCTGCAGCAAATGCTTGCTGAAAAGA
AATTCCAGGGGCATGAGAACAGTTCTGAAAGTTGGGTGCTGAGTGTTACATCCTTATCTGGTGCTCTCAATGGAACAACTCGTGTCTACCTGGATGGAATGCAGCCAGAAGACGGAAAGACAATCAAGCCCATCTGTCTGTTACAGCTGTGTCGTGTGGGAGTTATTATCTATGATTGGTTGGATATTGCTTGGCTGAAA
AATTACTACAACTTTGGGTTTGATCACTTTAATATGACTTGGCGGAAGGTCGGGATTTCTGGACTTATAGACAGTCTTCTAGGAAATGTTGGACCTTTTGCTTCAGAAGATTGGATTCTTCCAGATTTAAGCCTACAGGTCTCCGTGGAACTCAATACAAAACTCCAGACTTTCCCAAATACCTACTATTTCAGCTATGC
TACTAGAAAGACACGAAAATTGTTTGGAGTCACCGTACCTTCAAGTCTGTTTGGAATTCATCCTCTTCTATTTATTAGGACACTGCAGATGAGCCAGTGGTGTTATCCTAACAATGTACCACTTCCTTACAAAGGTTACAATGATGAGGATTGGCGAGATAATGACGGAGCATTAAACACAACCTCAATGCTTTATCCCC
GCTTTCCTCAGCCCCATCCCCACTGCTGGCTAAGTCTAGAATTTAAGGATGGTCATACGTTGCAACCAGGTGTTTGGTACTATACAATTGTGGAAGCTGATCACATTCTTTTCATTATCAACCGAGAAAGAGCAGGGGTACAGTTCGATATATTGTACGATAGCATTTTTCAAAGATGTCGAAAGCAGATGTCAAGAGCA
ATTAGTGCTGTTCCTTCTGTCGATGAGGGATTGGGTCATATATGCAGTAGTGTGGAGAATTGTGTGTGCCACTTATCTAGATTTGATCACAGACAGTAGTGAAATCTGGTCATCTTGTATTTCAAAGAAGATAAAAAGTTATTTTTTAACAGCCTCCCCAATACAATGTAGGAGGCTGTTTACTTCATTCAAATTTCAAT
TCATGAGGCGAGTATTGATTTTACCTCTTATGGCATGATTGTCTGTACTTTGAATTTCTTTATAGGCATTGATAACAAGAACATCAAGGAATAG