sp|Q8W4D6|HC173_ARATH ----> Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic
Intron 1 GTGGTTATAT ... AGAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.65 | 14 | 4 | 2 |
| A2 | 13.04 | 10 | 3 | 0 |
| A3 | 18.18 | 9 | 2 | 2 |
| A4 | 22.22 | 7 | 3 | 1 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 13.73 | 22 | 4 | 3 |
| A7 | 16.22 | 31 | 8 | 4 |
| A8 | 12 | 33 | 5 | 4 |
| A9 | 20 | 20 | 6 | 4 |
| A10 | 25.64 | 29 | 17 | 3 |
>TRINITY_DN41060_c0_g1_i3 from sample A8 / Example spliced isoformGTAGAAGCTAGTTTACATTGGTAGAATTTTCTATGAATTGATCAGAATTACAAATAAAGCTCTCTAATTTGAGCATCCTTCAGTCTGAAAATTCGGTAGAAACTCACGTTGAGAGGATTTCTCTGTCAACCGGTATTGAATTCCGTTGAAATGAGCGTTTAGGTGATTTGAATTTGTGCCATTTCAAGCGCCTAATTGTC
GAATTCCTCAGAGAATCCATTGAATTCGAATAATTGGGTGATTCAGATTGAGCAATTACGGCACGAACTTGGCATTTAAAAGAAAATATTAGGCATTTGGGTTTCCTGGAACTCGGAAGAATTCTTGCTCAGGTTGGCCTTGAAATTCAGAACCTGTAAGTACAACACAACTTCAAAAATCTTGAATTTTCATTGACGAG
TACTCCGAATGTTGATGATGTATACCCGTTGTATATATACAATTTGAAGAGAATACCGAATTTATCCACTGTAATTGAGCATAGATGGCAATCGCTGCTGCAGTAAACGGAATTCCACTGATATCTGCCGACAATAAAAAAGCATACCGATATAAATATTCTACTCCATTGCTGCAACCGAAGTTTTTTGGAAACCCTTT
AGTTAAAACCCTACCAAATTTCCCGTCTGTTGGCCGAAAATCAGTGCCCTTGGCCGGTCCCAGAAATGAGGTTGAACAAGAGAGCCAAGAAGAAGCTGGCAAGCAATCGGTTTCTCTGTCACTTGACGATGTGAATCCTGTTGGGCTTGGTAGGAAATCCAGGCAGATATTTGACGAAGTGTGGAGGAAATTTTCAGAAC
TGGGTCAGCTGTCCCGATCTCCAAGGAATGATGAGGAGTATGAGTCTGTCCTTGTGGGAGGTCCCATGTGTGAATTTACAATTCCTGGTGCAGCAGACACTACTGTGCTTGTTGTTGGGGCAACAAGCCGGATAGGCCGGATCCTTGTGCGAAAGCTCATGCTGAGAGGCTACAAGGTTAAGGCTTTGGTCCGGAAAGAT
GATCCAGAGACTCTAGAGATGCTTCCAAGATCAGTAAAGATAGCGGTTGGTGATGTGGGTGAGCCTTCAACAGTAAAAGCTGCTGTGGAAGGGTGCAACAAAGTCATTTATTGTGCTACTGCACGCTCCACCATTACTGGAGACCTTAATAGAGTGGATCATCTTGGTGTTTACAACTTATCAAAATCTTTTCAGGACTA
TAACCATAAGTTAGCCCAAATGCGAGCTGGGCGAAGTAGTAAAAGCAAACTCTCAATTGCCAAATTTAACCGCCCTGAAGCATTGGAGGGATGGGAGGTGCAGCAAGGCACATACTTCACCGATCTTGTTTCTTCCAAATATGAAGGAGGAATGGATGCAAAGTTTGAGTTTACAGAGACTGGCAAAGCTGTATTCTCAG
GATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCATTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTG
GGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTAGTGCACACTTTGAGAATCCGATTTGAACCAAGAAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAG
TGGTCAAGAGACAGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAAAGCTAAGCAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACA
GGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACAAGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGACTTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAG
AACACTTGACATCAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATTACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCAAATATGAGTAGCCTAGAAAGTCATTCAGGCTTCAATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGATCT
ATAAGCCTACTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGAATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGATCCACATTGAGTCAGCTTCAATGTATCTCATCTATAGTGATTGCAATGGGTTTTAATTACGAGCCAATTAAATTCCAGGTTCAAT
GAACACACAAGCCTTGTTCCTAGGATATCTTTCAGTGCTCCTAGTGTATACGAGAAAACCAATCAGAAAAATTTCAGGCCATAAAGAGAAGACAATAGAAAAGTCAAAACAATCCTGAGTTGACAATACTGCTTTCTGCTGCAGTGTAATTTATTTCTATGGAAATCTTTCCTAATTGATTTTCAATTACCTAATAATCA
GATTTGTCTCCAATTTTTTTTACTTGCATATGCAAGAATCAATATTTCGTTTCTTTTGTTTCAGATAACAAAAACATGGCACTTGGTGC
>TRINITY_DN41060_c0_g1_i1 from sample A8 / Example unspliced isoform:GTAGAAGCTAGTTTACATTGGTAGAATTTTCTATGAATTGATCAGAATTACAAATAAAGCTCTCTAATTTGAGCATCCTTCAGTCTGAAAATTCGGTAGAAACTCACGTTGAGAGGATTTCTCTGTCAACCGGTATTGAATTCCGTTGAAATGAGCGTTTAGGTGATTTGAATTTGTGCCATTTCAAGCGCCTAATTGTC
GAATTCCTCAGAGAATCCATTGAATTCGAATAATTGGGTGATTCAGATTGAGCAATTACGGCACGAACTTGGCATTTAAAAGAAAATATTAGGCATTTGGGTTTCCTGGAACTCGGAAGAATTCTTGCTCAGGTTGGCCTTGAAATTCAGAACCTGTAAGTACAACACAACTTCAAAAATCTTGAATTTTCATTGACGAG
TACTCCGAATGTTGATGATGTATACCCGTTGTATATATACAATTTGAAGAGAATACCGAATTTATCCACTGTAATTGAGCATAGATGGCAATCGCTGCTGCAGTAAACGGAATTCCACTGATATCTGCCGACAATAAAAAAGCATACCGATATAAATATTCTACTCCATTGCTGCAACCGAAGTTTTTTGGAAACCCTTT
AGTTAAAACCCTACCAAATTTCCCGTCTGTTGGCCGAAAATCAGTGCCCTTGGCCGGTCCCAGAAATGAGGTTGAACAAGAGAGCCAAGAAGAAGCTGGCAAGCAATCGGTTTCTCTGTCACTTGACGATGTGAATCCTGTTGGGCTTGGTAGGAAATCCAGGCAGATATTTGACGAAGTGTGGAGGAAATTTTCAGAAC
TGGGTCAGCTGTCCCGATCTCCAAGGAATGATGAGGAGTATGAGTCTGTCCTTGTGGGAGGTCCCATGTGTGAATTTACAATTCCTGGTGCAGCAGACACTACTGTGCTTGTTGTTGGGGCAACAAGCCGGATAGGCCGGATCCTTGTGCGAAAGCTCATGCTGAGAGGCTACAAGGTTAAGGCTTTGGTCCGGAAAGAT
GATCCAGAGACTCTAGAGATGCTTCCAAGATCAGTAAAGATAGCGGTTGGTGATGTGGGTGAGCCTTCAACAGTAAAAGCTGCTGTGGAAGGGTGCAACAAAGTCATTTATTGTGCTACTGCACGCTCCACCATTACTGGAGACCTTAATAGAGTGGATCATCTTGGTGTTTACAACTTATCAAAATCTTTTCAGGACTA
TAACCATAAGTTAGCCCAAATGCGAGCTGGGCGAAGTAGTAAAAGCAAACTCTCAATTGCCAAATTTAACCGCCCTGAAGCATTGGAGGGATGGGAGGTGCAGCAAGGCACATACTTCACCGATCTTGTTTCTTCCAAATATGAAGGAGGAATGGATGCAAAGTTTGAGTTTACAGAGACTGGCAAAGCTGTATTCTCAG
GATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCATTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTG
GGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTAGTGCACACTTTGAGAATCCGATTTGAACCAAGAAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAG
TGGTCAAGAGACAGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAAAGCTAAGCAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGgtggttatatctacatccttaatcatgaaaagtgacatcgaaaact
tattgaacctgcctcatgagaatttcagGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACAAGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGAC
TTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGACATCAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATTACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCA
AATATGAGTAGCCTAGAAAGTCATTCAGGCTTCAATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGATCTATAAGCCTACTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGAATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGATCCACATTGAG
TCAGCTTCAATGTATCTCATCTATAGTGATTGCAATGGGTTTTAATTACGAGCCAATTAAATTCCAGGTTCAATGAACACACAAGCCTTGTTCCTAGGATATCTTTCAGTGCTCCTAGTGTATACGAGAAAACCAATCAGAAAAATTTCAGGCCATAAAGAGAAGACAATAGAAAAGTCAAAACAATCCTGAGTTGACAA
TACTGCTTTCTGCTGCAGTGTAATTTATTTCTATGGAAATCTTTCCTAATTGATTTTCAATTACCTAATAATCAGATTTGTCTCCAATTTTTTTTACTTGCATATGCAAGAATCAATATTTCGTTTCTTTTGTTTCAGATAACAAAAACATGGCACTTGGTGC
Intron 2 GTATAATATA ... AGAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.84 | 14 | 8 | 2 |
| A2 | 30.29 | 10 | 4.5 | 0 |
| A3 | 9.09 | 9 | 1 | 1 |
| A4 | 30 | 7 | 3 | 0.5 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 11.86 | 22 | 3 | 1.5 |
| A7 | 9.67 | 31 | 3.5 | 2.5 |
| A8 | 13.92 | 33 | 5.5 | 2 |
| A9 | 18.83 | 20 | 5 | 3 |
| A10 | 18.71 | 29 | 8 | 1.5 |
>TRINITY_DN116417_c0_g1_i2 from sample A1 / Example spliced isoformTTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTCTCAGGATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCTTTGGGTTTTACTCTTGAC
AGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTGGGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATT
CCTAGTGCACACTTTGAGAATCCGATTTGAACCAAGAAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAGTGGTCAAGAGACGGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTC
TCAAAGCTAAGCAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGG
AACAAGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGACTTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGACATCAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCA
CATTACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCAAATATGAGTAGCCT
>TRINITY_DN116417_c0_g1_i3 from sample A1 / Example unspliced isoform:TCACCAATCCGCGATGCATCCATGCAACGCCTCAGCGGCCTTAAACCTTCCAAACACGTTGGTTTGAGCCTCCGAGAGACTGAAATTATGGTAGAAGCTAGTTTACATTGGTAGAATTTTCTATGAATTGATCAGAATTACAAATAAAGCTCTCTAATTTGAGCATCCTTCAGTCTGAAAATTCGGTAGAAACTCACGTT
GAGAGGATTTCTCTGTCAACCGGTATTGAATTCCGTTGAAATGAGCGTTTAGGTGATTTGAATTTGTGCCATTTCAAGCGCCTAATTGTCGAATTCCTCAGAGAATCCATTGAATTCGAATAATTGGGTGATTCAGATTGAGCAATTACGGCACGAACTTGGCATTTAAAAGAAAATATTAGGCATTTGGGTTTCCTGGA
ACTCGGAAGAATTCTTGCTCAGGTTGGCCTTGAAATTCAGAACCTGTAAGTACAACACAACTTCAAAAATCTTGAATTTTCATTGACGAGTACTCCGAATGTTGATGATGTATACCCGTTGTATATATACAATTTGAAGAGAATACCGAATTTATCCACTGTAATTGAGCATAGATGGCAATCGCTGCTGCAGTAAACGG
AATTCCACTGATATCTGCCGACAATAAAAAAGTATACCGATATAAATATTCTACTCCATTGCTGCAACCGAAGTTTTTTGGAAACCCTTTAGTTAAAACCCTACCAAATTTCCCGTCTGTTGGCCGAAAATCAGTGCCCTTGGCCGGTCCCAGAAATGAGGTTGAACAAGAGAGCCAAGAAGAAGCTGGCAAGCAATCGG
TTTCTCTGTCACTTGACGATGTGAATCCTGTTGGGCTTGGTAGGAAATCCAGGCAGATATTTGATGAAGTGTGGAGGAAATTTTCAGAACTGGGTCAGCTGTCCCGATCTCCAAGGAATGATGAGGAGTATGAGTCTGTCCTTGTGGGAGGTCCCATGTGTGAATTTACAATTCCTGGTGCAGCAGACACTACTGTGCTT
GTTGTTGGGGCAACAAGCCGGATAGGCCGGATCCTTGTGCGAAAGCTCATGCTGAGAGGCTACAAGGTTAAGGCTTTGGTCCGGAAAGATGATCCAGAGACTCTAGAGATGCTTCCAAGATCAGTAAAGATAGCGGTTGGTGATGTGGGTGAGCCTTCAACAGTAAAAGCTGCTGTGGAAGGGTGCAACAAAGTCATTTA
TTGTGCTACTGCACGCTCCACCATTACTGGAGACCTTAATAGAGTGGATCATCTTGGTGTTTACAACTTATCAAAATCTTTTCAGGACTATAACCATAAGTTAGCCCAAATGCGAGCTGGGCGAAGTAGTAAAAGCAAACTCTCAATTGCCAAATTTAACCGCCCTGAAGCATTGGAGGGATGGGAGGTGCAGCAAGGCA
CATACTTCACCGATCTTGTTTCTTCCAAATATGAAGGAGGAATGGATGCAAAGTTTGAGTTTACAGAGACTGGCAAAGCTGTATTCTCAGGATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCTTTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGAT
GGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTGGGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTAGTGCACACTTTGAGAATCCGATTTGAACCAAG
AAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAGTGGTCAAGAGACGGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAAAGCTAAGCAGGCTGGCGAGAAAACACTGAGAA
TATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGgtataatatattttctgtttttgttgtgtttgtggggcctcaattcatggaaaaaatatgcttagtttgtaattttgcctgttaatctcattgcacattttcagcgaaaataaatcagtgttgaataattatctccaacatctgggtgagaaattt
aggtggttatatctacatccttaatcatgaaaagtgacatcgaaaacttattgaacctgcctcatgagaatttcagGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGTTAGAAACTCAACATTACAATCTCTTGCAGG
Intron 3 GTGAGTACCT ... ATTTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.53 | 17 | 2 | 1 |
| A2 | 12.5 | 14 | 2 | 2 |
| A3 | 14.29 | 12 | 2 | 0 |
| A4 | 8.33 | 11 | 1 | 0 |
| A5 | 0 | 3 | 0 | 0 |
| A6 | 10.53 | 51 | 6 | 0 |
| A7 | 8 | 46 | 4 | 0 |
| A8 | 14.58 | 41 | 7 | 0 |
| A9 | 6.35 | 59 | 4 | 0 |
| A10 | 7.55 | 49 | 4 | 0 |
>TRINITY_DN110795_c0_g1_i3 from sample A2 / Example spliced isoformTTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCTGTATTCTCAGGATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCTTTGGGTTTTACTCTTGACAGGT
ATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTGGGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTA
GTGCACACTTTGAGAATCCGATTTGAACCAAGAAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAGTGGTCAAGAGACAGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAA
AGCTAAGCAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACA
AGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGACTTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGACATTAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATT
ACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCAAATATGAGTAGCCTAGAAAGTCATTCAGGCTTCAATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGTATCTATAAGCCTACTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGA
ATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGATCCACATTGAGTCAGCTTCAATGTATCTCATCTA
>TRINITY_DN110795_c0_g1_i4 from sample A2 / Example unspliced isoform:CCAATCCGCGATGCATCCATGCAACGCCTCAGCGGCCTTAAACCTTCCAAACACGTTGGTTTGAGCCTCCGAGAGACTGAAATTATGGTAGAAGCTAGTTTACATTGGTAGAATTTTCTATGAATTGATCAGAATTACAAATAAAGCTCTCTAATTTGAGCATCCTTCAGTCTGAAAATTCGGTAGAAACTCACGTTGAG
AGGATTTCTCTGTCAACCGGTATTGAATTCCGTTGAAATGAGCGTTTAGGTGATTTGAATTTGTGCCATTTCAAGCGCCTAATTGTCGAATTCCTCAGAGAATCCATTGAATTCGAATAATTGGGTGATTCAGATTGAGCAATTACGGCACGAACTTGGCATTTAAAAGAAAATATTAGGCATTTGGGTTTCCTGGAACT
CGGAAGAATTCTTGCTCAGGTTGGCCTTGAAATTCAGAACCTGTAAGTACAACACAACTTCAAAAATCTTGAATTTTCATTGACGAGTACTCCGAATGTTGATGATGTATACCCGTTGTATATATACAATTTGAAGAGAATACCGAATTTATCCACTGTAATTGAGCATAGATGGCAATCGCTGCTGCAGTAAACGGAAT
TCCACTGATATCTGCCGACAATAAAAAAGCATACCGATATAAATATTCTACTCCATTGCTGCAACCGAAGTTTTTTGGAAACCCTTTAGTTAAAACCCTACCAAATTTCCCGTCTGTTGGCCGAAAATCAGTGCCCTTGGCCGGTCCCAGAAATGAGGTTGAACAAGAGAGCCAAGAAGAAGCTGGCAAGCAATCGGTTT
CTCTGTCACTTGACGATGTGAATCCTGTTGGGCTTGGTAGGAAATCCAGGCAGATATTTGATGAAGTGTGGAGGAAATTTTCAGAACTGGGTCAGCTGTCCCGATCTCCAAGGAATGATGAGGAGTATGAGTCTGTCCTTGTGGGAGGTCCCATGTGTGAATTTACAATTCCTGGTGCAGCAGACACTACTGTGCTTGTT
GTTGGGGCAACAAGCCGGATAGGCCGGATCCTTGTGCGAAAGCTCATGCTGAGAGGCTACAAGGTTAAGGCTTTGGTCCGGAAAGATGATCCAGAGACTCTAGAGATGCTTCCAAGATCAGTAAAGATAGCGGTTGGTGATGTGGGTGAGCCTTCAACAGTAAAAGCTGCTGTGGAAGGGTGCAACAAAGTCATTTATTG
TGCTACTGCACGCTCCACCATTACTGGAGACCTTAATAGAGTGGATCATCTTGGTGTTTACAACTTATCAAAATCTTTTCAGGACTATAACCATAAGTTAGCCCAAATGCGAGCTGGGCGAAGTAGTAAAAGCAAACTCTCAATTGCCAAATTTAACCGCCCTGAAGCATTGGAGGGATGGGAGGTGCAGCAAGGCACAT
ACTTCACCGATCTTGTTTCTTCCAAATATGAAGGAGGAATGGATGCAAAGTTTGAGTTTACAGAGACTGGCAAAGCTGTATTCTCAGGATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCTTTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGA
AAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTGGGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTAGTGCACACTTTGAGAATCCGATTTGAACCAAGAAA
ACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAGTGGTCAAGAGACAGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAAAGCTAAGCAGGCTGGCGAGAAAACACTGAGAATAT
CTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACAAGAGCTTTGACgtgagtacctgttcttgaatgcct
aatgtcttttgtgcatcgccatttccattatgattaatatgcacggctttgcattttcccagGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGACTTTATGAGCTGGTAAGCACAGCCAATGTCTCAGCACTTTCTAC
Intron 4 GTATAATATA ... AGAAATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 4 | 6 | 4 |
| A2 | 50 | 3 | 6 | 0 |
| A3 | 0 | 2 | 0 | 0 |
| A4 | 33.33 | 3 | 3 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 20 | 4 | 2 | 0 |
| A7 | 15.79 | 8 | 1 | 2 |
| A8 | 33.33 | 5 | 3 | 2 |
| A9 | 14.29 | 6 | 2 | 0 |
| A10 | 5.56 | 17 | 1 | 1 |
>TRINITY_DN41060_c0_g1_i1 from sample A8 / Example spliced isoformGTAGAAGCTAGTTTACATTGGTAGAATTTTCTATGAATTGATCAGAATTACAAATAAAGCTCTCTAATTTGAGCATCCTTCAGTCTGAAAATTCGGTAGAAACTCACGTTGAGAGGATTTCTCTGTCAACCGGTATTGAATTCCGTTGAAATGAGCGTTTAGGTGATTTGAATTTGTGCCATTTCAAGCGCCTAATTGTC
GAATTCCTCAGAGAATCCATTGAATTCGAATAATTGGGTGATTCAGATTGAGCAATTACGGCACGAACTTGGCATTTAAAAGAAAATATTAGGCATTTGGGTTTCCTGGAACTCGGAAGAATTCTTGCTCAGGTTGGCCTTGAAATTCAGAACCTGTAAGTACAACACAACTTCAAAAATCTTGAATTTTCATTGACGAG
TACTCCGAATGTTGATGATGTATACCCGTTGTATATATACAATTTGAAGAGAATACCGAATTTATCCACTGTAATTGAGCATAGATGGCAATCGCTGCTGCAGTAAACGGAATTCCACTGATATCTGCCGACAATAAAAAAGCATACCGATATAAATATTCTACTCCATTGCTGCAACCGAAGTTTTTTGGAAACCCTTT
AGTTAAAACCCTACCAAATTTCCCGTCTGTTGGCCGAAAATCAGTGCCCTTGGCCGGTCCCAGAAATGAGGTTGAACAAGAGAGCCAAGAAGAAGCTGGCAAGCAATCGGTTTCTCTGTCACTTGACGATGTGAATCCTGTTGGGCTTGGTAGGAAATCCAGGCAGATATTTGACGAAGTGTGGAGGAAATTTTCAGAAC
TGGGTCAGCTGTCCCGATCTCCAAGGAATGATGAGGAGTATGAGTCTGTCCTTGTGGGAGGTCCCATGTGTGAATTTACAATTCCTGGTGCAGCAGACACTACTGTGCTTGTTGTTGGGGCAACAAGCCGGATAGGCCGGATCCTTGTGCGAAAGCTCATGCTGAGAGGCTACAAGGTTAAGGCTTTGGTCCGGAAAGAT
GATCCAGAGACTCTAGAGATGCTTCCAAGATCAGTAAAGATAGCGGTTGGTGATGTGGGTGAGCCTTCAACAGTAAAAGCTGCTGTGGAAGGGTGCAACAAAGTCATTTATTGTGCTACTGCACGCTCCACCATTACTGGAGACCTTAATAGAGTGGATCATCTTGGTGTTTACAACTTATCAAAATCTTTTCAGGACTA
TAACCATAAGTTAGCCCAAATGCGAGCTGGGCGAAGTAGTAAAAGCAAACTCTCAATTGCCAAATTTAACCGCCCTGAAGCATTGGAGGGATGGGAGGTGCAGCAAGGCACATACTTCACCGATCTTGTTTCTTCCAAATATGAAGGAGGAATGGATGCAAAGTTTGAGTTTACAGAGACTGGCAAAGCTGTATTCTCAG
GATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCATTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTG
GGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTAGTGCACACTTTGAGAATCCGATTTGAACCAAGAAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAG
TGGTCAAGAGACAGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAAAGCTAAGCAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGTGGTTATATCTACATCCTTAATCATGAAAAGTGACATCGAAAACT
TATTGAACCTGCCTCATGAGAATTTCAGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACAAGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGAC
TTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGACATCAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATTACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCA
AATATGAGTAGCCTAGAAAGTCATTCAGGCTTCAATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGATCTATAAGCCTACTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGAATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGATCCACATTGAG
TCAGCTTCAATGTATCTCATCTATAGTGATTGCAATGGGTTTTAATTACGAGCCAATTAAATTCCAGGTTCAATGAACACACAAGCCTTGTTCCTAGGATATCTTTCAGTGCTCCTAGTGTATACGAGAAAACCAATCAGAAAAATTTCAGGCCATAAAGAGAAGACAATAGAAAAGTCAAAACAATCCTGAGTTGACAA
TACTGCTTTCTGCTGCAGTGTAATTTATTTCTATGGAAATCTTTCCTAATTGATTTTCAATTACCTAATAATCAGATTTGTCTCCAATTTTTTTTACTTGCATATGCAAGAATCAATATTTCGTTTCTTTTGTTTCAGATAACAAAAACATGGCACTTGGTGC
>TRINITY_DN41060_c0_g1_i2 from sample A8 / Example unspliced isoform:GAAAGTTCTCAAAGCTAAGCAGGTTATTATTGTACTTGAAATATTTTCCTCTCTTGCCAAACTGGTTAAATGGTCAAAATATTTTCACAGCTCTTGCAACTAGATGCTTAGATTTAATTTGATGCTGTTGAATTTGGAAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCA
CTACTGgtataatatattttctgtttttgttgtgtttgtggggcttcgattcatggaaaaaatatgcttagtttgtaattttgcctgttaatctcattgcacattttcagcgaaaataaatcagtggtgaataattatctccaacatgtgggtgagaaatttagGTGGTTATATCTACATCCTTAATCATGAAAAGTGAC
ATCGAAAACTTATTGAACCTGCCTCATGAGAATTTCAGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACAAGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAA
GGGCAAGGACTTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGACATCAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATTACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTA
TTCCCTTTCAAATATGAGTAGCCTAGAAAGTCATTCAGGCTTCAATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGATCTATAAGCCTACTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGAATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGAT
CCACATTGAGTCAGCTTCAATGTATCTCATCTATAGTGATTGCAATGGGTTTTAATTACGAGCCAATTAAATTCCAGGTTCAATGAACACACAAGCCTTGTTCCTAGGATATCTTTCAGTGCTCCTAGTGTATACGAGAAAACCAATCAGAAAAATTTCAGGCCATAAAGAGAAGACAATAGAAAAGTCAAAACAATCCT
GAGTTGACAATACTGCTTTCTGCTGCAGTGTAATTTATTTCTATGGAAATCTTTCCTAATTGATTTTCAATTACCTAATAATCAGATTTGTCTCCAATTTTTTTTACTTGCATATGCAAGAATCAATATTTCGTTTCTTTTGTTTCAGATAACAAAAACATGGCACTTGGTGC
Intron 5 GTTATTATTG ... AATTTGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.48 | 15 | 2.3 | 2.7 |
| A2 | 36.19 | 11.6 | 2.1 | 6.6 |
| A3 | 6.35 | 6.7 | 1.3 | 0.6 |
| A4 | 39.05 | 3.9 | 0.4 | 2.6 |
| A5 | 8.57 | 6.4 | 1.3 | 0.9 |
| A6 | 22.88 | 15 | 2 | 4.7 |
| A7 | 8.16 | 32.9 | 2.9 | 4 |
| A8 | 27.07 | 20.4 | 3.7 | 7.7 |
| A9 | 3.9 | 36.7 | 3.9 | 1.7 |
| A10 | 11.77 | 32.4 | 1.1 | 4.9 |
>TRINITY_DN110795_c0_g1_i3 from sample A2 / Example spliced isoformTTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCTGTATTCTCAGGATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCTTTGGGTTTTACTCTTGACAGGT
ATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACATCTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTGGGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTA
GTGCACACTTTGAGAATCCGATTTGAACCAAGAAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAGTGGTCAAGAGACAGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAA
AGCTAAGCAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACA
AGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGACTTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGACATTAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATT
ACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCAAATATGAGTAGCCTAGAAAGTCATTCAGGCTTCAATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGTATCTATAAGCCTACTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGA
ATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGATCCACATTGAGTCAGCTTCAATGTATCTCATCTA
>TRINITY_DN110795_c0_g1_i6 from sample A2 / Example unspliced isoform:AAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGCAGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAGTGGTCAAGAGACAGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAAAGCTAAGCAGgttattattgtacttgaaatattttcctc
tcttgccaaactggttaaatggtcaaaatattttcacagctcttgcaactagatgcttagatttaatttgatgctgttgaatttggaagGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGTATAATATATTTTCTGTTTTTGTTGTGTTTGTG
Intron 6 GTTAGAAACT ... ATGGCTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.29 | 12 | 0 | 2 |
| A2 | 23.08 | 10 | 1 | 3 |
| A3 | 36.84 | 12 | 0 | 7 |
| A4 | 22.22 | 7 | 1 | 2 |
| A5 | 14.29 | 6 | 0 | 1 |
| A6 | 28.26 | 33 | 3 | 13 |
| A7 | 23.53 | 39 | 0 | 12 |
| A8 | 18.18 | 36 | 2 | 8 |
| A9 | 35 | 26 | 0 | 14 |
| A10 | 31.48 | 37 | 0 | 17 |
>TRINITY_DN40230_c0_g1_i1 from sample A6 / Example spliced isoformAAAAGTTTGAGAGGATAAACATATATATATATATTTGTCTCTTATCCGTTTCCGGGGCCTTGTCTGATCGCCACGTGTCAATATAACCAACCCACAGAATATGAATGACGTAGAATAATTCAAACCACCGATATTGATCGTAGATCGCTGTTCACCAATCCGCGATGCATCCATGCAACGCCTCAGCGGCCTTAAACCTT
CCAAACACGTTGGTTTGAGCCTCCGAGAGACTGAAATTATGGTAGAAGCTAGTTTACATTGGTAGAATTTTCTATGAATTGATCAGAATTACAAATAAAGCTCTCTAATTTGAGCATCCTTCAGTCTGAAAATTCGGTAGAAACTCACGTTGAGAGGATTTCTCTGTCAACCGGTATTGAATTCCGTTGAAATGAGCGTT
TAGGTGATTTGAATTTGTGCCATTTCAAGCGCCTAATTGTCGAATTCCTCAGAGAATCCATTGAATTCGAATAATTGGGTGATTCAGATTGAGCAATTACGGCACGAACTTGGCATTTAAAAGAAAATATTAGGCATTTGGGTTTCCTGGAACTCGGAAGAATTCTTGCTCAGGTTGGCCTTGAAATTCAGAACCTGTAA
GTACAACACAACTTCAAAAATCTTGAATTTTCATTGACGAGTACTCCGAATGTTGATGATGTATACCCGTTGTATATATACAATTTGAAGAGAATACCGAATTTATCCACTGTAATTGAGCATAGATGGCAATCGCTGCTGCAGTAAACGGAATTCCACTGATATCTGCCGACAATAAAAAAGTATACCGATATAAATAT
TCTACTCCATTGCTGCAACCGAAGTTTTTTGGAAACCCTTTAGTTAAAACCCTACCAAATTTCCCGTCTGTTGGCCGAAAATCAGTGCCCTTGGCCGGTCCCAGAAATGAGGTTGAACAAGAGAGCCAAGAAGAAGCTGGCAAGCAATCGGTTTCTCTGTCACTTGACGATGTGAATCCTGTTGGGCTTGGTAGGAAATC
CAGGCAGATATTTGATGAAGTGTGGAGGAAATTTTCAGAACTGGGTCAGCTGTCCCGATCTCCAAGGAATGATGAGGAGTATGAGTCTGTCCTTGTGGGAGGTCCCATGTGTGAATTTACAATTCCTGGTGCAGCAGACACTACTGTGCTTGTTGTTGGGGCAACAAGCCGGATAGGCCGGATCCTTGTGCGAAAGCTCA
TGCTGAGAGGCTACAAGGTTAAGGCTTTGGTCCGGAAAGATGATCCAGAGACTCTAGAGATGCTTCCAAGATCAGTAAAGATAGCGGTTGGTGATGTAGGTGAGCCTTCAACAGTAAAAGCTGCTGTGGAAGGGTGCAACAAAGTCATTTATTGTGCTACTGCACGCTCCACCATTACTGGAGACCTTAATAGAGTGGAT
CATCTTGGTGTTTACAACTTATCAAAATCTTTTCAGGACTATAACCATAAGTTAGCCCAAATGCGAGCTGGGCGAAGTAGTAAAAGCAAACTCTCAATTGCCAAATTTAACCGCCCTGAAGCATTGGAGGGATGGGAGGTGCAGCAAGGCACATACTTCACCGATCTTGTTTCTTCCAAATATGAAGGAGGAATGGATGC
AAAGTTTGAGTTTACAGAGACTGGCAAAGCTGTATTCTCAGGATATGTGTTTACCAGGGGTGGCTACGTAGAGCTGGCAAAGAAGCTTTCTCTTCCTTTGGGTTTTACTCTTGACAGGTATGAAGGTCTCTTATTCTCTATTGGGGGAGATGGAAAAGGATACATAGTAATTCTTGAAGCTGGACCATCTGGTGATACAT
CTCAAAGCAAACTGTATTTTGCACGCTTTGCCACACGTGTGGGCTTTGGCAGGTTTAGGATACCCTTCTCAGCTTTCCGGCCTGTGAAGCCAGAGGATCCTCCACTAGATCCATTCCTAGTGCACACTTTGAGAATCCGATTTGAACCAAGAAAACAGAAATCAACTGTTAGTGCAAAACAAGCAGTGCAAGACACTAGC
AGCTTCAAGATGATTTTGGAATACATAAAGGCTCTGCCAAGTGGTCAAGAGACGGATTTTGTTTTGGTTTCTTGTACAGGATCTGGTATTGAACCTAGCACAAGAGAGAAAGTTCTCAAAGCTAAGCAGGCTGGCGAGAAAACACTGAGAATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGAAGA
ACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACAAGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGACTTTATGAGCTGGTTGCCCATCTACCAGACAAAG
CAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGACATCAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATTACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCAAATATGAGTAGCCTAGAAAGTCATTCAGGCTTC
AATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGTATCTATAAGCCTACTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGAATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGATCCACATTGAGTCAGCTTCAATGTATCTCATCTATAGTGATTG
CAATGGGTTTTAATTACGAGCCAATTAAATTCCAGGTTCAATGAACACACAAGCCTTGTTCCTAGGATATCTTTCAGTGCTCCTAGTGTATACGAGAAAACCAATCAGAAAAATTTCAGGCCATAAAGAGAAGACAATAGAAAAGTCAAAACAATCCTGAGTTGACAATACTGCTTTCTGCTGCAGTGTAATTTATTTCT
ATGGAAATCTTTCCTAATTGATTTTCAATTACCTAATAATCAGATTTGTCTCCAATTTTTTTTACTTGCATATGCAAGAATCAATATTTCGTTTCTTTTGTTTCAGATAACAAAAACATGGCACTTGGTGAAACAATTTTGTTATCAGACGTTGTGAAGTTAAAATGCAATGCCC
>TRINITY_DN40230_c0_g1_i2 from sample A6 / Example unspliced isoform:ATATCTGGCCTTGGCTACACAATAATTCGACCAGGTCCACTACTGGAAGAACCTGGAGGCCAGCATGCACTTGTCTTTGATCAAGGAAACAGGATTACACAGgttagaaactcaacattacaatctcttgcaggctctgacaatatcaatatttatggtttttcatgagtagagacatttacatacttcctatggctata
gGGGATAAGTTGTGCTGATGTAGCAGATATTTGTGTAAAGGCCTTGCATGATTCAACTGCAAGGAACAAGAGCTTTGACGTCTGCTATGAATATGTTGCAGAGCAAGGGCAAGGACTTTATGAGCTGGTTGCCCATCTACCAGACAAAGCAAATAATTATTTGACTCCGGCTCTTTCTGTTTTGGAGAAGAACACTTGAC
ATCAAAACAAGCATGAAAATCATAACCATCTACAGCTTCTTTGTCAATAATTTGGCATTCTTCACATTACCATAATACTAGTCTGGAATGTGTAGGTTTCGTGTTATTCCCTTTCAAATATGAGTAGCCTAGAAAGTCATTCAGGCTTCAATCTCATACTTGATCGTGGTTTTCTTCAAGCAAATGTATCTATAAGCCTA
CTGATATTCTTCATTGTATTTATAACCAACCAGCAACTACTTGATCTTCCATTATGAGAGTCATCCGAATTCTGACTTTGAGAAGCTTCCTCTTAGTTGTGTCTGATCCACATTGAGTCAGCTTCAATGTATCTCATCTATAGTGATTGCAATGGGTTTTAATTACGAGCCAATTAAATTCCAGGTTCAATGAACACACA
AGCCTTGTTCCTAGGATATCTTTCAGTGCTCCTAGTGTATACGAGAAAACCAATCAGAAAAATTTCAGGCCATAAAGAGAAGACAATAGAAAAGTCAAAACAATCCTGAGTTGACAATACTGCTTTCTGCTGCAGTGTAATTTATTTCTATGGAAATCTTTCCTAATTGATTTTCAATTACCTAATAATCAGATTTGTCT
CCAATTTTTTTTACTTGCATATGCAAGAATCAATATTTCGTTTCTTTTGTTTCAGATAACAAAAACATGGCACTTGGTGAAACAATTTTGTTATCAGACGTTGTGAAGTTAAAATGCAATGCCC