NA ----> NA
Intron 1 GTACATGCCT ... GTTTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.77 | 26 | 14 | 7 |
| A2 | 25.71 | 13 | 3 | 6 |
| A3 | 27.27 | 4 | 1 | 2 |
| A4 | 22.22 | 14 | 7 | 1 |
| A5 | 20 | 8 | 0 | 4 |
| A6 | 20.83 | 57 | 16 | 14 |
| A7 | 20.2 | 79 | 24 | 16 |
| A8 | 24.39 | 62 | 23 | 17 |
| A9 | 20.99 | 32 | 14 | 3 |
| A10 | 27.27 | 20 | 9 | 6 |
>TRINITY_DN126977_c3_g1_i5 from sample A1 / Example spliced isoformCGTTGAGCTAAGGCTCTCTAATACTAGTGTTACAAGCATAGTTACAGGAATCGTGACTCGCGATTATTCCGAGTTTGTCTCGGATCGGGTGCTAGACGAGTCGATTCTGCACGGCGCGAGTTGGGATCGGTAAAGGGCGATTTTAGCTCGGAAATCGGGGAAAAGTCGGATCAGCGCAGAACGGATCGGCGAGTTTGACT
CGCAGCCACCTCTTCAGCAACTCGAAAACGTTCAATCCGCGCCATTTTCCAGTGCTTTCTCCAAAGATTTTAGGGCACGTTTTTTACCTAAATTTCCCGCGTTCCTTTCCGTCGTCAGGGGCTTTATATCGACGCCTATATCCACTTGTTTACACGCATTCGACCGTTTTCCAACTCCGGTATTCGATGCGGGCAGAGCG
ACTCTGCTTTGTACGTGGGCTCAGCAACTCCGCTGTGTACGCGGGCTCAGCAACTCTGCTGTGTACGCGGGCTCAACGATTATGCTCGAGTCTCAACTGTGGGCACAGTGGCACACAATGCAACACATAATAACAGCCTCACCACTGCAGGCACACAACACAGCATTCGACGCCGCGGGCTCACAATTGCAAACACACAA
CGCAGCACACAACGCGGCTTCGAGTCTCAACTGTGGGCACGGTGGCACACAATACGTGTTTTAGAGTCTACGTGGCCTGTGTTCGGGCTTGGGCAACTAGGGAGAAGAGGGCTCACTATCTTTAACAACAAAAGCACGATCAATTAATGCATCAAAAGGTCCACCTGTGAATCATTGTGCTGGATTTCGTACTTGGACAT
CAATGGAACATGATACAACTCAAACTGATGGAGTTTTCCGTGAGACTTTCAGAGTTGAGGTAAATGCAGCAGATTATGGTTTTCAACCAACAGACACTCCAAGAACTGATAGATCGGTAGCAAAAAATATTGAGTTGGGATTAGATGCTCTTCGAGGTCAAAAAGGACCAGCTTATGATCGCATTGTGTTGAATGCTGCT
ATGGCTGACCATTTATTAGGATGCTCAGGTGCTAGTGACATATTATGTGCTCTAGAAAGGTCAAAAGAAGCTATCGACAGTGGGAGGGCGCTAAACAGATTACTGAATTACGTAGAGATGAGTCATAAAGTAAAATGATTGGTTCCAGTGATCAAAATAATTTTGTTATTGCTTCATTCTTGTTTCTTTATTCTTTTGAG
ACCCTGAGAAGATTTGTCTGTCTATAAATTTGTACTTACGTCTGCTATTTCCGTGGTAAAGTAATCAATTTGGAGAAGAAAATAACTTATTACGCACAACTATGTTCTGCATTTTCATGTCCAACGAATGAGTTTAATAAATATTGGTGCCAAAAAGCATGGCCTCCATCCGTGAATGAAACTGAAATATTGAGCTGACA
AGGAAAAAATGCAAGCTAGATGCTACCTCTTTACATACAAAGTATAAGCTGGCTGTTTTCATGCTTTGGATAATAAATATGTAAATCTTGAAGGATTTAATAGTGCCTCTTAAATAGAGATGATTGGAATCGACATACAATTATTAAAATTATTAAATAGTTAGCC
>TRINITY_DN126977_c3_g1_i7 from sample A1 / Example unspliced isoform:CGCGAGCTAGATGACAAAGGGGGTTGAGATAGCAGGAGAAAAGTGGTCTGTATCTCATTTGTTCATTGAAAACAATGACGTCAATTGAAAATTCATACCGAAATCGTGCGTAGGAGCCAGAGCTGGTGGCAACCAAGTGTGGACTCCACTAGATTAAGCAAGAACTATGAAGGGATTCTTATGGGATTCATACTGATCAC
GATTGTATTTTAATAGTATTCAGATGGAATCTGGCCAGCTCACACGAATCCCATATTGACAATGCCGCTGACAACATTTTTTATTTGTATGGAGCTTATAACGTGGGTTTCATAACAATTTTAGTACCCCCAGAGTGTCCTGGCAACAGAAGAAACGCCAGCATGCATACAGCAATAGGTTCTCATCTGGTTTTGAGCAA
ACTACCGATCTGCAGGTCTGGAAATGGAGACTGGAAAACACCCAAATATCGAAAAGACGACAGCGTTCATTCTATTGGTTGTCTCAGGAACCACTACTTTAGAAGAATACCCTATTCTCCAATTACACCTTCCAGTGGGCCCGAAAATAAGGGCAAATCAAGCTCTAAAGCGGTTGTTCATGCAAGTTCAGTGAAGGAGG
ATATAAATGGAGTAGATGAGTTAGAAGCAGGGCGTCGCAATCCAGGGCTTTCAGGAAACTATCGTCCATTAACTAAGGTAAAGCCGAATGCTACAGTGCTGGAAGCGCAGGGTCGAATCTGTACTGGGCCTACTCAGACGAGACCTCTCAATGAACAACAGGCCTTTAAGGTTCTTGACACCATCCTGCAATCAGCAAGA
GGAGAGCTTAGAAATGAAGAAGCAGTTTCAGCGACACAACTTGGGGCATTCTTTGCTGGCATGACAATACGTGCTAATGCTTTCCCTGTAGCTACCCAATGGAGTGAGGGAGAAACACGAGCAATGAATGCATATTGGCCACTTTTCATTCAGACTTTGCCACATGATGTACTTTTTCTAGCAGATCCTGAGGGCTCCCT
AATGAGTGGAGCTTCTCCTGTTGGGCCTCGGTTTGTGGGCAGTGAACCTATAGAAATGAGATTGGTAGGTGCTTTGAGAGAGGTTTTGGCAGGTGGCCATCTTGGCTACGAAGAGGTTGCAGGTATTCTTAAGGACGTGCTTCCAGTTTTCAGGCATGATGGCAGGCCCAACACTGTTAGTGAGTCATTGCTTGCGGCAT
TTCTGATTGGGCAGCGCATGAATGGAGAGACAGATCGAGAGCTTAAAGCATATTGCCTTGCTTTTGATGATGAGCTTGGTCCTCTACCAGTGGCAGATGTCAGGTCTTTGACTCATTATGGAGAACCATATGATGGAAACACGCGGTTCTTTAGAAGCACATTATTTGTGGCTGCCGTGAGAGCAAGCTATGGAGAAGCT
TGCCTTTTGCATGGGGTAGAGTGGATGCCTCCAAAGGGGGGCATAACTGAAGAACAAATGCTTGATGTCATGGGGGCATCTACAACTCTGTCTCCTGCTGCAGCTGTGAAGCTTCTTGAGGATGACCAGGTTGGATTTGCATACATAAGTCAGCGGGAAGCTCGACCATCCTTGTATTCACTCATCAGTCTAAGGGAGCA
TATAAAAAAACGTCCCCCAATTGCAACGACTGAGAAAGTTCAACGATATGTTAAGGCAACTGGAAGAGAAGCAATCATGGCAGGTTTTTATCATGAAGGGTATGAAGATCCCTTGTTAATGCTCATGAGAAGAAGGGGAGTTGATTCTGGACTGGTTGTAAAGGGAGAAGAGGGCTCACTATCTTTAACAACAAAAGCAC
GATCAATTAATGCATCAAAAGGTCCACCTGTGAATCATTGTGCTGGATTTCGTACTTGGACATCAATGGAACATGATACAACTCAAACTGATGGAGTTTTCCGTGAGACTTTCAGAGTTGAGGTAAATGCAGCAGATTATGGTTTTCAACCAACAGACACTCCAAGAACTGATAGATCGgtacatgcctagcaccttggc
tcatattccataattatttttaatctatgaaacaatctggtgacattttgaaataagtgtattaccacattgtgatataagccattcaagtaactattgaaaacgctgtttgagcagGTAGCAAAAAATATTGAGTTGGGATTAGATGCTCTTCGAGGTCAAAAAGGACCAGCTTATGATCGCATTGTGTTGAATGCTGC
TATGGCTGACCATTTATTAGGATGCTCAGGTGCTAGTGACATATTATGTGCTCTAGAAAGGTCAAAAGAAGCTATCGACAGTGGGAGGGCGCTAAACAGATTACTGAATTACGTAGAGATGAGTCATAAAGTAAAATGATTGGTTCCAGTGATCAAAATAATTTTGTTATTGCTTCATTCTTGTTTCTTTATTCTTTTGA
GACCCTGAGAAGATTTGTCTGTCTATAAATTTGTACTTACGTCTGCTATTTCCGTGGTAAAGTAATCAATTTGGAGAAGAAAATAACTTATTACGCACAACTATGTTCTGCATTTTCATGTCCAACGAATGAGTTTAATAAATATTGGTGCCAAAAAGCATGGCCTCCATCCGTGAATGAAACTGAAATATTGAGCTGAC
AAGGAAAAAATGCAAGCTAGATGCTACCTCTTTACATACAAAGTATAAGCTGGCTGTTTTCATGCTTTGGATAATAAATATGTAAATCTTGAAGGATTTAATAGTGCCTCTTAAATAGAGATGATTGGAATCGACATACAATTATTAAAATTATTAAATAGTTAGCC
Intron 2 GTGGTGATAG ... CTGCAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.67 | 14 | 2.4 | 10 |
| A2 | 52.94 | 8 | 2.8 | 9 |
| A3 | 55 | 9 | 1.8 | 11 |
| A4 | 50 | 2 | 0 | 2 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 42 | 29 | 3.4 | 21 |
| A7 | 51.02 | 24 | 7.2 | 25 |
| A8 | 34.48 | 38 | 13.2 | 20 |
| A9 | 36.67 | 19 | 5.6 | 11 |
| A10 | 43.18 | 25 | 5.2 | 19 |
>TRINITY_DN42832_c0_g1_i2 from sample A6 / Example spliced isoformTCGTTGAGCTAAGGCTCTCTAATACTAGTGTTACAAGCATAGTTACAGGAATCGTGACTCGCGATTATTCCGAGTTTGTCTCGGATCGGGTGCTAGACGAGTCGATTCTGCACGGCGCGAGTTGGGATCGGTAAAGGGCGATTTTAGCTCGGAAATCGGGGAAAAGTCGGATCAGCGCAGAACGGATCGGCGAGTTTGAC
TCGCAGCCACCTCTTCAGCAACTCGAAAACGTTCAATCCGCGCCATTTTCCAGTGCTTTCTCCAAAGATTTTAGGGCACGTTTTTTACCTAAATTTCCCGCGTTCCTTTCCGTCGTCAGGGGCTTTATATCGACGCCTATATCCACTTGTTTACACGCATTCGACCGTTTTCCAACTCCGGTATTCGATGCGGGCAGAGC
GACTCTGCTTTGTACGTGGGCTCAGCAACTCCGCTGTGTACGCGGGCTCAGCAACTCTGCTGTGTACGCGGGCTCAACGATTATGCTCGAGTCTCAACTGTGGGCACAGTGGCACACAATGCAACACATAATAACAGCCTCACCACTGCAGGCACACAACACAGCATTCGACGCCGCGGGCTCACAATTGCAAACACACA
ACGCAGCACACAACGCGGCTTCGAGTCTCAACTGTGGGCACGGTGGCACACAATACGTGTTTTAGAGTCTACGTGGCCTGTGTTCGGGCTTGGGCAACTAGGGAGAAGAGGGCTCACTATCTTTAACAACAAAAGCACGATCAATTAATGCATCAAAAGGTCCACCTGTGAATCATTGTGCTGGATTTCGTACTTGGACA
TCAATGGAACATGATACAACTCAAACTGATGGAGTTTTCCGTGAGACTTTCAGAGTTGAGGTAAATGCAGCAGATTATGGTTTTCAACCAACAGACACTCCAAGAACTGATAGATCGGTAGCAAAAAATATTGAGTTGGGATTAGATGCTCTTCGAGGTCAAAAAGGACCAGCTTATGATCGCATTGTGTTGAATGCTGC
TATGGCTGACCATTTATTAGGATGCTCAGGTGCTAGTGACATATTATGTGCTCTAGAAAGGTCAAAAGAAGCTATCGACAGTGGGAGGGCGCTAAACAGATTACTGAATTACGTAGAGATGAGTCATAAAGTAAAATGATTGGTTCCAGTGATCAAAATAATTTTGTTATTGCTTCATTCTTGTTTCTTTATTCTTTTGA
GACCCTGAGAAGATTTGTCTGTCTATAAATTTGTACTTACGTCTGCTATTTCCGTGGTAAAGTAATCAATTTGGAGAAGAAAATAACTTATTACGCACAACTATGTTCTGCATTTTCATGTCCAACGAATGAGTTTAATAAATATTGGTGCCAAAAAGCATGGCCTCCATCCGTGAATGAAACTGAAATATTGAGCTGAC
AAGGAAAAAATGCAAGCTAGATGCTACCTCTTTACATACAAAGTATAAGCTGGCTGTTTTCATGCTTTGGATAATAAATATGTAAATCTTGAAGGATTTAATAGTGCCTCTTAAATAGAGATGATTGGAATCGACATACAATTATTAAAATTATTAAATAGTTAGCTTCCTTCTGGG
>TRINITY_DN42832_c0_g1_i3 from sample A6 / Example unspliced isoform:CGGGCTTGGGCAACTAGgtggtgatagggatggctgtcccatctttgacatcccatctgggtggggaagcacctcaagttatacaaggaggatctattaaattagagttggaccctgcaattagGGAGAAGAGGGCTCACTATCTTTAACAACAAAAGCACGATCAATTAATGCATCAAAAGGTCCACCTGTGAATCATT
GTGCTGGATTTCGTACTTGGACATCAATGGAACATGATACAACTCAAACTGATGGAGTTTTCCGTGAGACTTTCAGAGTTGAGGTAAATGCAGCAGATTATGGTTTTCAACCAACAGACACTCCAAGAACTGATAGATCGGTAGCAAAAAATATTGAGTTGGGATTAGATGCTCTTCGAGGTCAAAAAGGACCAGCTTAT
GATCGCATTGTGTTGAATGCTGCTATGGCTGACCATTTATTAGGATGCTCAGGTGCTAGTGACATATTATGTGCTCTAGAAAGGTCAAAAGAAGCTATCGACAGTGGGAGGGCGCTAAACAGATTACTGAATTACGTAGAGATGAGTCATAAAGTAAAATGATTGGTTCCAGTGATCAAAATAATTTTGTTATTGCTTCA
TTCTTGTTTCTTTATTCTTTTGAGACCCTGAGAAGATTTGTCTGTCTATAAATTTGTACTTACGTCTGCTATTTCCGTGGTAAAGTAATCAATTTGGAGAAGAAAATAACTTATTACGCACAACTATGTTCTGCATTTTCATGTCCAACGAATGAGTTTAATAAATATTGGTGCCAAAAAGCATGGCCTCCATCCGTGAA
TGAAACTGAAATATTGAGCTGACAAGGAAAAAATGCAAGCTAGATGCTACCTCTTTACATACAAAGTATAAGCTGGCTGTTTTCATGCTTTGGATAATAAATATGTAAATCTTGAAGGATTTAATAGTGCCTCTTAAATAGAGATGATTGGAATCGACATACAATTATTAAAATTATTAAATAGTTAGCTTCCTTCTGGG