sp|Q9C6S1|FH14_ARATH ----> Formin-like protein 14
Intron 1 GTAAGTAGCT ... TGACAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.94 | 37 | 3 | 8 |
| A2 | 16.67 | 30 | 4 | 8 |
| A3 | 24.24 | 25 | 12 | 4 |
| A4 | 23.33 | 23 | 0 | 14 |
| A5 | 12 | 11 | 1 | 2 |
| A6 | 20 | 2 | 1 | 0 |
| A7 | 11.11 | 4 | 1 | 0 |
| A8 | 25 | 3 | 0 | 2 |
| A9 | 14.29 | 12 | 2 | 2 |
| A10 | 22.22 | 7 | 4 | 0 |
>TRINITY_DN107243_c0_g1_i7 from sample A2 / Example spliced isoformAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAATCTTCCCCCT
ATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGGGAGCCCCAATTTTCTCGTGCGAGGAGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCC
GAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAAGGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCA
GATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTCTGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGC
GAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTATGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCT
TTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAATATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGG
ACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAGACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATG
GTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAACGGTTTTCAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGT
AGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTT
CCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTT
GGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAGGCCTAACATCACCTCCACCTGCACCCTCTCCACCCTTGCTACCTTTGTCTAGGTCCAATGTATCTCCACCTCAACCTCCACCTCCGCCTCCACCACCACCACCACCACTACC
>TRINITY_DN107243_c0_g1_i3 from sample A2 / Example unspliced isoform:AAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAATCTTCCCCCT
ATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCTCGTGCGAGG
AGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAA
GGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGgtaagtagctatattgcatatctttgcttttttaaacttttgtgtaaatgtattgacatttccatttcatttcatgacaagcagTATTCGATTCATGTTT
CTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTCTGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTC
TTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTATGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCG
CCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAATATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGG
GCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAGACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAG
TTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAACGGTTTTCAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAA
GCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGA
AGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAG
GCCTAACATCACCTCCACCTGCACCCTCTCCACCCTTGCTACCTTTGTCTAGGTCCAATGTATCTCCACCTCAACCTCCACCTCCGCCTCCACCACCACCACCACCACTACC
Intron 2 GCATTTCTTC ... CTGTTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.11 | 13 | 63 | 65.3 |
| A2 | 86.69 | 8 | 51 | 53.3 |
| A3 | 76.11 | 14 | 45 | 44.3 |
| A4 | 84.36 | 13 | 65 | 75.5 |
| A5 | 79.59 | 10 | 40 | 38 |
| A6 | 80 | 1 | 3 | 5 |
| A7 | 80.95 | 4 | 22 | 12 |
| A8 | 84.3 | 1 | 6 | 4.8 |
| A9 | 83.92 | 3 | 15 | 16.5 |
| A10 | 70.55 | 6 | 15 | 13.8 |
>TRINITY_DN113590_c0_g1_i6 from sample A3 / Example spliced isoformAACGAATATAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATT
GGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAG
>TRINITY_DN113590_c0_g1_i3 from sample A3 / Example unspliced isoform:AACGAATATAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGgcatttcttcgcttctcttcttctgacaaaagtgaaatctcaat
cttccccctattgtattatctgacgatgattgctgttctaatatttctgttaccagCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGGTACAAAACATTTTCACCATTCTATTGAATCTCTTCTCTTTGGGTTTTGGTCAAGTAAA
GGGGATTATTTAATTAAAGAAATGACAGATTCATTTGTTCCACCGACAAACTGTTTTCCGAGGTGTCTATCCTTCTGTTGATGGCTTGCCACTAGTTTTGGGGGAAATTCATTGAATTAATCTCTGGTTTATTTTGATTGGAAGATGCCTAGGGCAACTTGATAGTTGTGGTCTTTGCTTATGAAATAATGAGATTTTTT
TTTGGTTGTTGTAAAGTTAAGCTCTCTGAATCGTATTCTGGTTTAGAGTGGGTTGCAATCTTGTGTTTGGCGGTTTTGTTGCTGTTGATTGCTACTGGGGTTTAACCGTTTTCTTCCGTTTGTTTGAATGTGAAGAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCTCGTGCG
AGGAGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGATGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCC
AAAGGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGA
TTCTGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTAC
TTATGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGA
AATATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTA
CAGACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAG
AACGGTTTTCAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAA
CAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTC
AGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAGGCCTAACATCACCTCCACCTGCACCCTCTCCACCCTTGCTACCTTTGTCTAGGTCCAATGTATCTCCACCTCCACCTCCAC
CTCCGCCTCCACCACCACCACCAC
Intron 3 GTACAAAACA ... GAATGTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.52 | 61.5 | 21.7 | 18 |
| A2 | 23.8 | 49.7 | 19.3 | 11 |
| A3 | 25.11 | 47.8 | 15 | 17 |
| A4 | 26.03 | 64.7 | 22 | 23 |
| A5 | 18.27 | 25 | 11 | 0 |
| A6 | 28.34 | 6.5 | 3 | 2 |
| A7 | 20 | 8 | 0 | 4 |
| A8 | 0 | 3 | 0 | 0 |
| A9 | 22.08 | 17.7 | 3 | 7 |
| A10 | 22.61 | 15.8 | 7 | 2 |
>TRINITY_DN115826_c0_g1_i3 from sample A1 / Example spliced isoformAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAATCTTCCCCCT
ATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCTCGTGCGAGG
AGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAA
GGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTC
TGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTA
TGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAAT
ATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAG
ACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAAC
GGTTTTCAAAAAATTTCCGAGCTGAAGTACGTATTTCAAATTGTATTGCTTTGAGTCAACAGTTCTAAACTTTTGTGAACAACTGGTCATTCCCATCTGAACAAAATTGATCTCATTTACTTGTAAATATTTGTCATCAGGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAAT
GGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCA
AAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCC
CACCTCCAGCTCCTCTTCGACAAAGATCAG
>TRINITY_DN115826_c0_g1_i7 from sample A1 / Example unspliced isoform:AAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAATCTTCCCCCT
ATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGgtacaaaacattttcaccattctattgaatctcttctctttgggttttggtcaagtaaaggggattat
ttaattaaagaaatgacagattcatttgttccaccgacaaactgttttccgaggtgtctatccttctgttgatggcttgccactagttttgggggaaattcattgaattaatctctggtttattttgattggaagatgcctagggcaacttgatagttgtggtctttgcttatgaaataatgagatttttttttggttgt
tgtaaagttaagctgtctgaatcgtattctggtttagagtgggttgcaatcttgtgtttggcggttttgttgctgttgattgctactggggtttaaccgttttcttccgtttgtttgaatgtgaagAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCTCGTGCGAGGAGACAA
TGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAAGGCGAA
GTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTCTGCCTT
TCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTATGCATT
GTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAATATGTCT
CCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAGACAGGT
TGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAACGGTTTT
CAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCT
TCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAAT
TGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAG
Intron 4 GTACAATTGA ... CGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.86 | 57.5 | 16 | 9 |
| A2 | 31.91 | 16 | 14 | 1 |
| A3 | 27.45 | 37 | 23 | 5 |
| A4 | 41.28 | 32 | 30 | 15 |
| A5 | 52 | 6 | 6 | 7 |
| A6 | 33.33 | 4 | 2 | 2 |
| A7 | 23.08 | 15 | 6 | 3 |
| A8 | 33.33 | 2 | 2 | 0 |
| A9 | 16.13 | 13 | 1 | 4 |
| A10 | 20 | 14 | 4 | 3 |
>TRINITY_DN113590_c0_g1_i3 from sample A3 / Example spliced isoformAACGAATATAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAAT
CTTCCCCCTATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGGTACAAAACATTTTCACCATTCTATTGAATCTCTTCTCTTTGGGTTTTGGTCAAGTAAA
GGGGATTATTTAATTAAAGAAATGACAGATTCATTTGTTCCACCGACAAACTGTTTTCCGAGGTGTCTATCCTTCTGTTGATGGCTTGCCACTAGTTTTGGGGGAAATTCATTGAATTAATCTCTGGTTTATTTTGATTGGAAGATGCCTAGGGCAACTTGATAGTTGTGGTCTTTGCTTATGAAATAATGAGATTTTTT
TTTGGTTGTTGTAAAGTTAAGCTCTCTGAATCGTATTCTGGTTTAGAGTGGGTTGCAATCTTGTGTTTGGCGGTTTTGTTGCTGTTGATTGCTACTGGGGTTTAACCGTTTTCTTCCGTTTGTTTGAATGTGAAGAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCTCGTGCG
AGGAGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGATGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCC
AAAGGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGA
TTCTGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTAC
TTATGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGA
AATATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTA
CAGACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAG
AACGGTTTTCAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAA
CAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTC
AGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAGGCCTAACATCACCTCCACCTGCACCCTCTCCACCCTTGCTACCTTTGTCTAGGTCCAATGTATCTCCACCTCCACCTCCAC
CTCCGCCTCCACCACCACCACCAC
>TRINITY_DN113590_c0_g1_i8 from sample A3 / Example unspliced isoform:AACGAATATAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAAT
CTTCCCCCTATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCT
CGTGCGAGGAGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGATGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGgtacaattgaatttttttacagaattatacttatttcgttgaaggt
ttagtggattgtgttgtgtgcctgttccaagatgcaaggattttttcagtttgatttcaaaaacatttgatctggtttgccattttctattcacatttgatgaatatctggaatctgtaagttgttatttatcattaagattgtgaaggaaatacaggcagagtatgaggattggatacattgttctgcttgattcttag
tcagacaacgggtgaagctctctcttgtatttggggttttcgtatctctttttgcccttttcaaaggtttgcagctcttgtgggttggtctaatggccagtgagtggcagtggcaaacaaagggctaaacattggagagtcatcttttccacggacaatatagattccaaggttataggtggacagtacctgcgtggagg
ggaaatgtggggatcttggcttgtcaccttttctttgatttttggtagtgcatagattctcaatgtttactgatgccaactatcgaactactgctgcatttctattcatctgtagttttttgagcactgtttttatttcaattttagggacctatccaaaatgttgtcggtggatgaaggcttaggccacaagctgttgt
cttattacaatttgctttttgtctgtatattgtgctatccatctatgcactactttgtaattcatcctattcttaagaaacttgctttctgttgttagtgacatgtatattattttggaaaagaattatactcggtggtctgctggtctgtattcgtgccctagtagatggatgtgaccatctttgtaatcatgtttccc
tcattctcagtgttattaagtctcgaggatgtttgttgtgggcaatctgtcatatattgctttgtcagcagtgtactagtgaatgctcatagtttacagtgcgttgtgcagAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAAGGCGAAGTATCTTCAACCATTCTAAGAATGTCTC
TACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGGTAAGTAGCTATATTGCATATCTTTGCTTTTTTAAACTTTTGTGTAAATGTATTGACATTTCCATTTCATTTCATGACAAGCAGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCAC
ATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTCTGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCG
TGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTATGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAA
ATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAATATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACA
CAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAGACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATAT
TCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAACGGTTTTCAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTG
TTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCT
CTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAGGCCTAACATCACCTCCACCTGCACCCTCTCCACC
CTTGCTACCTTTGTCTAGGTCCAATGTATCTCCACCTCCACCTCCACCTCCGCCTCCACCACCACCACCAC
Intron 5 GTACGTATTT ... TTGTCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.43 | 44 | 9 | 15 |
| A2 | 5.56 | 17 | 2 | 0 |
| A3 | 20.75 | 21 | 7 | 4 |
| A4 | 11.86 | 26 | 1 | 6 |
| A5 | 20 | 2 | 1 | 0 |
| A6 | 21.05 | 15 | 3 | 5 |
| A7 | 23.08 | 25 | 6 | 9 |
| A8 | 25 | 3 | 2 | 0 |
| A9 | 23.08 | 20 | 5 | 7 |
| A10 | 15 | 34 | 4 | 8 |
>TRINITY_DN115826_c0_g1_i5 from sample A1 / Example spliced isoformAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACGACGGAAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACC
GAAGGAAGGAGCAATCGATCGAGAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCTCGTGCGAGGAGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCAT
TGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAAGGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATT
CATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTCTGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAAT
TGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTATGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAG
AGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAATATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTG
TTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAGACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATG
TTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAACGGTTTTCAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCC
TGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTG
TATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAA
AGATCAG
>TRINITY_DN115826_c0_g1_i3 from sample A1 / Example unspliced isoform:AAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAATCTTCCCCCT
ATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGAAACCCTCATTTTAATTATCCGGACCAACATTTGCTAAAATAGGGAGCCCCAATTTTCTCGTGCGAGG
AGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAA
GGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTC
TGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTA
TGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAAT
ATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAG
ACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAAC
GGTTTTCAAAAAATTTCCGAGCTGAAgtacgtatttcaaattgtattgctttgagtcaacagttctaaacttttgtgaacaactggtcattcccatctgaacaaaattgatctcatttacttgtaaatatttgtcatcagGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAAT
GGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCA
AAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCC
CACCTCCAGCTCCTCTTCGACAAAGATCAG
Intron 6 GTACAAAACA ... GCTAAAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.23 | 34.5 | 21.5 | 23 |
| A2 | 40.2 | 29 | 19 | 20 |
| A3 | 49.45 | 23 | 15 | 30 |
| A4 | 44.62 | 36 | 22 | 36 |
| A5 | 38.1 | 13 | 11 | 5 |
| A6 | 41.18 | 5 | 3 | 4 |
| A7 | 55.56 | 4 | 0 | 10 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 50 | 6 | 3 | 9 |
| A10 | 38.46 | 8 | 7 | 3 |
>TRINITY_DN115826_c0_g1_i2 from sample A1 / Example spliced isoformAAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAATCTTCCCCCT
ATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGGGAGCCCCAATTTTCTCGTGCGAGGAGACAATGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCC
GAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAAGGCGAAGTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCA
GATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTCTGCCTTTCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGC
GAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTATGCATTGTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCT
TTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAATATGTCTCCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGG
ACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAGACAGGTTGATTGTGATGTTGTAAAAATTGACATCCAATGCATG
GTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAACGGTTTTCAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGT
AGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCTTCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTT
CCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAATTGCACCATATACAGCTCATGGATCAACACCGCCACTT
GGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAG
>TRINITY_DN115826_c0_g1_i7 from sample A1 / Example unspliced isoform:AAACCTATCAACAAAATCGTCGCACTTTTATGAAATCTCATCTTCTGTTCATAAATAATCCAACAGCCTTTCAAACTGCGGGCGAAACAGAGATCAGATTTATTGTATTTTGAATGTTGACTGGACCGTTTGACTTTACCACGGAAGGCATTTCTTCGCTTCTCTTCTTCTGACAAAAGTGAAATCTCAATCTTCCCCCT
ATTGTATTATCTGACGATGATTGCTGTTCTAATATTTCTGTTACCAGCCGAAACAGGGGTTGCAAATTAAATTTTCCGTGGAAATTGGATTGGATTGTAACGAACAACCGAAGGAAGGAGCAATCGATCGAGgtacaaaacattttcaccattctattgaatctcttctctttgggttttggtcaagtaaaggggattat
ttaattaaagaaatgacagattcatttgttccaccgacaaactgttttccgaggtgtctatccttctgttgatggcttgccactagttttgggggaaattcattgaattaatctctggtttattttgattggaagatgcctagggcaacttgatagttgtggtctttgcttatgaaataatgagatttttttttggttgt
tgtaaagttaagctgtctgaatcgtattctggtttagagtgggttgcaatcttgtgtttggcggttttgttgctgttgattgctactggggtttaaccgttttcttccgtttgtttgaatgtgaagaaaccctcattttaattatccggaccaacatttgctaaaatagGGAGCCCCAATTTTCTCGTGCGAGGAGACAA
TGTCCGTCCAATTATAGGTTAGCTGGCGGGAATCGCCGAGCGATGGTTGGAAGTTCAAGTCATACATTTGGTAGACAGAAAACTTGGGCGGATGCCCCATCATTGCAGGCAGTTCCATTTTCTATTTTAATTGGTACAGAAACTAGGATCCGGCCCTTAGGATTACTGCATTGGCAATAGTCCAGTGGGCCAAAGGCGAA
GTATCTTCAACCATTCTAAGAATGTCTCTACTTAGCAGATTCTTCCACAGAAGGTCTCCTGATGGCCTTCTTAAATTTGTTGATAGAGTTTATGTATTCGATTCATGTTTCTCAACTGAGGTTCTACCAGATGAGATCTATCACATTTACTTGCGAGAAATTGTCACTGAGTTGCATGAACAGTATCCCGATTCTGCCTT
TCTTGCATTCAATTTCAGAGAGGGAGAGAAGAGAAGCGAGTTTGCAGAAATTGTGTGTGAATATGATGTTACAGTTATGGATTACCCCAGGCAGTATGAGAATTGTCCTCTTCTTCCGCTGTCTCTGATCCATCATTTTCTTCGTGCAAGTGATAAGTGGCTATCAATGAGAAACCATCAAAACATTGTACTTATGCATT
GTGAAAGAGGAGGCTGGCCCTTACTAGCTTTTCTTCTTTCATGCTTTCTCATTTACAGAAAGCTTCAAACTGGTGAGCAAAGGATTCTCGACAGTGTTTACAGAGAGGCGCCGAAAGGTTTTTTGCAGCTCTTGTCACCTCTAAATCCATTTCCTTCACAGTTGCGTTATCTTCAATATGCTGCTAGAAGAAATATGTCT
CCAGAGTGGCCACCACTAGAGCGGGCACTTTCTTTGGACTGTCTTATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTTTTTGGGCGGGATATTCATGATAAGGGTGGGCTTTCTACACAGATGCTTTTCTCCATGAATAAGAAGAAGAAGACCTTGCGACACTACAGACAGGT
TGATTGTGATGTTGTAAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAAGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAATATTCTGATGCTTAATGTAGATGATCTTGACATACTCTGGGATTCCAAAGAACGGTTTT
CAAAAAATTTCCGAGCTGAAGTTCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCACGACCGCCTATTGCAACACTGAATGGGGAAGAGAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGACAGTGGAGGTGATGCTGCACTATTGTTCTTTCAACAGATTTCT
TCTAATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGCATGCACCACAATCACCCAACTTTGCGTAGCAAGCAAAATGTACATTCAACACCTATTGTATTTGAAGATGAGGAGAAAGAGGGCAAGCGTGAAGATTCTCTGCCAACGCCATTGCATTCTAGATCAAAGTCTGATCTCAATCTGTCAGCTCAAAT
TGCACCATATACAGCTCATGGATCAACACCGCCACTTGGGCCAACCCCTCCACCACGCTCAAGGGCAATGTCATCCTCCCCACCTCCAGCTCCTCTTCGACAAAGATCAG