sp|Q8W4Q4|MRF3_ARATH ----> MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 3
Intron 1 GTAAATCTCT ... CCCTAGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.16 | 50 | 64 | 75 |
| A2 | 51.69 | 57 | 54 | 68 |
| A3 | 50.92 | 67 | 64 | 75 |
| A4 | 55.7 | 68 | 85 | 86 |
| A5 | 44.39 | 57 | 35 | 56 |
| A6 | 57.71 | 37 | 39 | 62 |
| A7 | 57.89 | 44 | 54 | 67 |
| A8 | 34.62 | 17 | 7 | 11 |
| A9 | 54.84 | 49 | 55 | 64 |
| A10 | 52 | 54 | 50 | 67 |
>TRINITY_DN120961_c5_g2_i4 from sample A1 / Example spliced isoformGTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTCCAATGATGGGTTCCTCACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAG
TCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGAAAAATGGCCGTCCCAAAAAGAGTATGTGGCTCACTGATTTTCTCAATCTTCTTCTAGATGTAGC
TTCTTTATGGGATGTTTGACTTGTCTGCAACCTAGAATATTCAGGTCATAGTATATAAAAGTTACTTTCAATGTAAAGTTTGTGCTTATTGTTGTTTTCTTTGTATATTGAACTTTATTGTGATCGAGATGCTTGTCAATGCTCATTTTTATTCATTAAGGCTATGAATAGTGCAATGCATTGCTAAATTTTAGTTGTAC
TGGAGAGGAGTTACACTTTATGCCTTATTTTTTTGAGTACTTCTGAAGTAGAGCTTTCTACATGATATACTTGAAGCCCTTAAAATTCACTAGAAGCAGTTTCTAAATCTCATGTTATCCATGTAGCCATTAGAACAATTCTCAGTAAATGGCCAATTACGACTGTGTGTAAATGGCCAAGTACGACTGTGTGGATAATC
TGCGAGGATTAGCTACTCTGGAAGTTAGGGTAAGCCGCAAATACAAATATTGAACGACTTTGGTAATGTCTCTAAACAAACTTTTATTTTATTCGCCCTGCCACGGCACAAGGTCAATTCAACAATATATACTCAAGTTACAATGTTTCCAAACAAGCTATATTTTACATCATAACTATTTATTTAGATGGAAGTTATGC
TATTTTATCAGTAGTGCTTTCAATGACTTTATAACTATTTATATGGATGGAAGTTATGGTATTTTATCAATAGTGCATTCAGTGCCTTCCCATTAAATATGATGAGAGGCAAAATTCAATTATCTTAAATATCTATTTTTATATATTATGATATGTTTGTTTTGAACTTCATGTTGAGGACCAGTTGGTCTGTATGTATG
TTCTGTATCACGTATTATGTGAAACAGTACTGTGAGGTCTGATTCCGAAAGGAAGGCACATAATTGTATGACCAAATGCGAGGTTTGATTCTAAAAGAAGGTACACAGTTGTATGACTGAATGCAAAACGAAAAGAAAGGTAAAACAAAATCAAAGAATAAAATACAATGATGCATGCCTTTATGTAATGTCATTCATAT
CACTCTGACTATTTGTTGTGTTCTTTTGCTGCTCCATGTGTTGTCTGCATCTGCTCTTCGTAAAAAGTTATTCTCTGCCATATTTCCTTGTTGGTCTTGTACAGGCTATGTGGGATTTGAACTGAATTACTTTGTTGGACCTCTTAGTTATATGAGTAAAAAATTCCATTTGATGTTCAGTAATGCTTAAATCAATCACT
CTTTTCATGTTTTTTTTTTCCATTTATAGGTTTTTATTTATTGAGTATTTAATTGTTATTGTATGAAGATTATGCAGGTAACTACTTTTTGGAAGAGATATTTAGTTCTAATAATGATATGATTAGTTAGGAAATGTATAACACATACTAGGCATAGTTTTAAAAATCGGTCAACTCGAACTCGGACTCGGTCGAGTTGA
CCAAGTTGACCCTCCACTGAGCTAACTCGGCCTTCAAACCGGATTGGGTG
>TRINITY_DN120961_c5_g2_i9 from sample A1 / Example unspliced isoform:GTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTgtaaatctctttactgtaaactataaccctaacgttattgggcagtttttttatccctagcaagAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTC
CAATGATGGGTTCCTCACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAGTCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGA
AAAATGGCCGTCCCAAAAAGAGAACCTTATCAATTGGTGGGTACAACTGTATCTCAGTCTTTGGAGGAATACAAGGGAAAAGTTGGATCGATAATAAAGGAATATTTTGCTACTGACGATGTGGCTTCAGTAGCTGCTGATCTTGCTGATCTGGGCTGTCCAAGTTATCACCATTATTTTGTTAAAAAACTTATCTCCAT
GGCAATGGACAGGCATGACCGAGAGAAAGAGATGGCGGCAGTGCTATTATCCTCTCTGTATGCTGATGTGATTGAACCTGAG
Intron 2 GTACTGTTTC ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.74 | 75 | 25 | 27 |
| A2 | 26.49 | 68 | 18 | 31 |
| A3 | 29.91 | 75 | 28 | 36 |
| A4 | 28.33 | 86 | 24 | 44 |
| A5 | 28.21 | 56 | 14 | 30 |
| A6 | 22.5 | 62 | 8 | 28 |
| A7 | 27.96 | 67 | 17 | 35 |
| A8 | 31.25 | 11 | 4 | 6 |
| A9 | 24.71 | 64 | 16 | 26 |
| A10 | 20.24 | 67 | 4 | 30 |
>TRINITY_DN120961_c5_g2_i2 from sample A1 / Example spliced isoformGTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTGTAAATCTCTTTACTGTAAACTATAACCCTAACGTTATTGGGCAGTTTTTTTATCCCTAGCAAGAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTC
CAATGATGGGTTCCTCACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAGTCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGA
AAAATGGCCGTCCCAAAAAGAGTATGTGGCTCACTGATTTTCTCAATCTTCTTCTAGATGTAGCTTCTTTATGGGATGTTTGACTTGTCTGCAACCTAGAATATTCAGGTCATAGTATATAAAAGTTACTTTCAATGTAAAGTTTGTGCTTATTGTTGTTTTCTTTGTATATTGAACTTTATTGTGATCGAGATGCTTGT
CAATGCTCATTTTTATTCATTAAGGCTATGAATAGTGCAATGCATTGCTAAATTTTAGTTGTACTGGAGAGGAGTTACACTTTATGCCTTATTTTTTTGAGTACTTCTGAAGTAGAGCTTTCTACATGATATACTTGAAGCCCTTAAAATTCACTAGAAGCAGTTTCTAAATCTCATGTTATCCATGTAGCCATTAGAAC
AATTCTCAGTAAATGGCCAATTACGACTGTGTGTAAATGGCCAAGTACGACTGTGTGGATAATCTGCGAGGATTAGCTACTCTGGAAGTTAGGGTAAGCCGCAAATACAAATATTGAACGACTTTGGTAATGTCTCTAAACAAACTTTTATTTTATTCGCCCTGCCACGGCACAAGGTCAATTCAACAATATATACTCAA
GTTACAATGTTTCCAAACAAGCTATATTTTACATCATAACTATTTATTTAGATGGAAGTTATGCTATTTTATCAGTAGTGCTTTCAATGACTTTATAACTATTTATATGGATGGAAGTTATGGTATTTTATCAATAGTGCATTCAGTGCCTTCCCATTAAATATGATGAGAGGCAAAATTCAATTATCTTAAATATCTAT
TTTTATATATTATGATATGTTTGTTTTGAACTTCATGTTGAGGACCAGTTGGTCTGTATGTATGTTCTGTATCACGTATTATGTGAAACAGTACTGTGAGGTCTGATTCCGAAAGGAAGGCACATAATTGTATGACCAAATGCGAGGTTTGATTCTAAAAGAAGGTACACAGTTGTATGACTGAATGCAAAACGAAAAGA
AAGGTAAAACAAAATCAAAGAATAAAATACAATGATGCATGCCTTTATGTAATGTCATTCATATCACTCTGACTATTTGTTGTGTTCTTTTGCTGCTCCATGTGTTGTCTGCATCTGCTCTTCGTAAAAAGTTATTCTCTGCCATATTTCCTTGTTGGTCTTGTACAGGCTATGTGGGATTTGAACTGAATTACTTTGTT
GGACCTCTTAGTTATATGAGTAAAAAATTCCATTTGATGTTCAGTAATGCTTAAATCAATCACTCTTTTCATGTTTTTTTTTTCCATTTATAGGTTTTTATTTATTGAGTATTTAATTGTTATTGTATGAAGATTATGCAGGTAACTACTTTTTGGAAGAGATATTTAGTTCTAATAATGATATGATTAGTTAGGAAATG
TATAACACATACTAGGCATAGTTTTAAAAATCGGTCAACTCGAACTCGGACTCGGTCGAGTTGACCAAGTTGACCCTCCACTGAGCTAACTCGGCCTTCAAACCGGATTGGGTG
>TRINITY_DN120961_c5_g2_i1 from sample A1 / Example unspliced isoform:GTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTGTAAATCTCTTTACTGTAAACTATAACCCTAACGTTATTGGGCAGTTTTTTTATCCCTAGCAAGgtactgtttcttttttctgctttaagtttttgctgttttcttttatgttttatcggatttgtgctgaaactg
gtcagaatgcaaatgcgcgtagcggcattatcttttaggataaaccctaagtattcccgtcagcggtggctccatatatcgtatttggggtttacttatatatttttttttattttaaaacaatgaccaacaataaatgggactaatctcggagattttttttgaaatttatctcgtcggcgcataatgtttggtgggca
aggccgttgccctagctttaatgaattcgtcgtgctttcaacaggaaaagtgaatgtcccttttactattttattttatttttatattaactgagcttagcaatttgtgtatattattcatttttgacgtttctgcaatagtgaatacgttttgcgatctgaaaaaatggcattcgacttttaatctggacattcggctc
tgtcgcttggtgtgctaataaatttccctgctagggttttggcgtttatctatgaaaaatagtgctatcattagtatttttgatgacgaatgcgtgttgtcaatatttgcagAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTCCAATGATGGGTTCCTC
ACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAGTCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGAAAAATGGCCGTCCCAA
AAAGAGTATGTGGCTCACTGATTTTCTCAATCTTCTTCTAGATGTAGCTTCTTTATGGGATGTTTGACTTGTCTGCAACCTAGAATATTCAGGTCATAGTATATAAAAGTTACTTTCAATGTAAAGTTTGTGCTTATTGTTGTTTTCTTTGTATATTGAACTTTATTGTGATCGAGATGCTTGTCAATGCTCATTTTTAT
TCATTAAGGCTATGAATAGTGCAATGCATTGCTAAATTTTAGTTGTACTGGAGAGGAGTTACACTTTATGCCTTATTTTTTTGAGTACTTCTGAAGTAGAGCTTTCTACATGATATACTTGAAGCATTTAAAATTCACTAGAAGCAGTTTCTAAATCTCATGTTATCCATGTAGCCATTAGAACAATTCTCAGTAAATGG
CCAATTACGACTGTGTGTAAATGGCCAAGTACGACTGTGTGGATAATCTGCGAGGATTAGCTACTCTGGAAGTTAGGGTAAGCCGCAAATACAAATATTGAACGACTTTGGTAATGTCTCTAAACAAACTTTTATTTTATTCGCCCTGCCACGGCACAAGGTCAATTCAACAATATATACTCAAGTTACAATGTTTCCAA
ACAAGCTATATTTTACATCATAACTATTTATTTAGATGGAAGTTATGCTATTTTATCAGTAGTGCTTTCAATGACTTTATAACTATTTATATGGATGGAAGTTATGGTATTTTATCAATAGTGCATTCAGTGCCTTCCCATTAAATATGATGAGAGGCAAAATTCAATTATCTTAAATATCTATTTTTATATATTATGAT
ATGTTTGTTTTGAACTTCATGTTGAGGACCAGTTGGTCTGTATGTATGTTCTGTATCACGTATTATGTGAAACAGTACTGTGAGGTCTGATTCCGAAAGGAAGGCACATAATTGTATGACCAAATGCGAGGTTTGATTCTAAAAGAAGGTACACAGTTGTATGACTGAATGCAAAACGAAAAGAAAGGTAAAACAAAATC
AAAGAATAAAATACAATGATGCATGCCTTTATGTAATGTCATTCATATCACTCTGACTATTTGTTGTGTTCTTTTGCTGCTCCATGTGTTGTCTGCATCTGCTCTTCGTAAAAAGTTATTCTCTGCCATATTTCCTTGTTGGTCTTGTACAGGCTATGTGGGATTTGAACTGAATTACTTTGTTGGACCTCTTAGTTATA
TGAGTAAAAAATTCCATTTGATGTTCAGTAATGCTTAAATCAATCACTCTTTTCATGTTTTTTTTTTCCATTTATAGGTTTTTATTTATTGAGTATTTAATTGTTATTGTATGAAGATTATGCAGGTAACTACTTTTTGGAAGAGATATTTAGTTCTAATAATGATATGATTAGTTAGGAAATGTATAACACATACTAGG
CATAGTTTTAAAAATCGGTCAACTCGAACTCGGACTCGGTCGAGTTGACCAAGTTGACCCTCCACTGAGCTAACTCGGCCTTCAAACCGGATTGGGTG
Intron 3 GTGGATGTGG ... TAGTGAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.44 | 110 | 229 | 526 |
| A2 | 81.35 | 65 | 161 | 406 |
| A3 | 82.01 | 92 | 228 | 611 |
| A4 | 79.06 | 71 | 159 | 377 |
| A5 | 78.66 | 51 | 115 | 261 |
| A6 | 84.42 | 37 | 134 | 267 |
| A7 | 80.67 | 84 | 198 | 503 |
| A8 | 83.03 | 23 | 64 | 161 |
| A9 | 78.04 | 65 | 139 | 323 |
| A10 | 77.37 | 93.3 | 175.3 | 463 |
>TRINITY_DN120961_c5_g2_i10 from sample A1 / Example spliced isoformGTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTGTAAATCTCTTTACTGTAAACTATAACCCTAACGTTATTGGGCAGTTTTTTTATCCCTAGAAAGGTTCTGTTTCTTTTTTTCTGCTTTAAGTTTTTGCTGTTTTCTTTTATGTTTTATCGGATTTGTGCTGAAACT
GGTCAGAATGCAAATGCGCGTAGCGGCATTATCTTTTAGGATAAACCCTAAGTATTCCCGTCAGCGGTGGCTCCATATATCGTATTTGGGGTTTACTTATATATTTTTTTTTATTTTAAAACAATGACCAACAATAAATGGGACTAATCTCGGAGATTTTTTTTGAAATTTATCTCGTCGGCGCATAATGTTTGGTGGGC
AAGGCCGTTGCCCTAGCTTTAATGAATTCGTCGTGCTTTCAACAGGAAAAGTGAATGTCCCTTTTACTATTTTATTTTATTTTTATATTAACTGAGCTTAGCAATTTGTGTATATTATTCATTTTTGACGTTTCTGCAATAGTGAATACGTTTTGCGATCTGAAAAAATGGCATTCGACTTTTAATCTGGACATTCGGCT
CTGTCGCTTGGTGTGCTAATAAATTTCCCTGCTAGGGTTTTGGCGTTTATCTATGAAAAATAGTGCTATCATTAGTATTTTTGATGACGAATGCGTGTTGTCAATATTTGCAGAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTCCAATGATGGGTTCCT
CACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAGTCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGAAAAATGGCCGTCCCA
AAAAGAGAACCTTATCAATTGGTGGGTACAACTGTATCTCAGTCTTTGGAGGAATACAAGGGAAAAGTTGGATCGATAATAAAGGAATATTTTGCTACTGACGATGTGGCTTCAGTAGCTGCTGATCTTGCTGATCTGGGCTGTCCAAGTTATCACCATTATTTTGTTAAAAAACTTATCTCCATGGCAATGGACAGGCA
TGACCGAGAGAAAGAGATGGCGGCAGTGCTATTATCCTCTCTGTATGCTGATGTGATTGAACCTGAG
>TRINITY_DN120961_c5_g2_i6 from sample A1 / Example unspliced isoform:GTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTGTAAATCTCTTTACTGTAAACTATAACCCTAACGTTATTGGGCAGTTTTTTTATCCCTAGCAAGAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTC
CAATGATGGGTTCCTCACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAGTCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGA
AAAATGGCCGTCCCAAAAAGAgtggatgtggtggcaaaggcacttggggaggattacttgacactgatggggatttgcacattgatcgcaatgacccaaactatgatagtgaggagGAACCTTATCAATTGGTGGGTACAACTGTATCTCAGTCTTTGGAGGAATACAAGGGAAAAGTTGGATCGATAATAAAGGAATAT
TTTGCTACTGACGATGTGGCTTCAGTAGCTGCTGATCTTGCTGATCTGGGCTGTCCAAGTTATCACCATTATTTTGTTAAAAAACTTATCTCCATGGCAATGGACAGGCATGACCGAGAGAAAGAGATGGCGGCAGTGCTATTATCCTCTCTGTATGCTGATGTGATTGAACCTGAG
Intron 4 GTAAATCTCT ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.39 | 50 | 38 | 27 |
| A2 | 34.86 | 57 | 30 | 31 |
| A3 | 38.25 | 67 | 47 | 36 |
| A4 | 43.1 | 68 | 59 | 44 |
| A5 | 32.14 | 57 | 24 | 30 |
| A6 | 37.29 | 37 | 16 | 28 |
| A7 | 42.11 | 44 | 29 | 35 |
| A8 | 27.66 | 17 | 7 | 6 |
| A9 | 36.36 | 49 | 30 | 26 |
| A10 | 31.21 | 54 | 19 | 30 |
>TRINITY_DN120961_c5_g2_i4 from sample A1 / Example spliced isoformGTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTCCAATGATGGGTTCCTCACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAG
TCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGAAAAATGGCCGTCCCAAAAAGAGTATGTGGCTCACTGATTTTCTCAATCTTCTTCTAGATGTAGC
TTCTTTATGGGATGTTTGACTTGTCTGCAACCTAGAATATTCAGGTCATAGTATATAAAAGTTACTTTCAATGTAAAGTTTGTGCTTATTGTTGTTTTCTTTGTATATTGAACTTTATTGTGATCGAGATGCTTGTCAATGCTCATTTTTATTCATTAAGGCTATGAATAGTGCAATGCATTGCTAAATTTTAGTTGTAC
TGGAGAGGAGTTACACTTTATGCCTTATTTTTTTGAGTACTTCTGAAGTAGAGCTTTCTACATGATATACTTGAAGCCCTTAAAATTCACTAGAAGCAGTTTCTAAATCTCATGTTATCCATGTAGCCATTAGAACAATTCTCAGTAAATGGCCAATTACGACTGTGTGTAAATGGCCAAGTACGACTGTGTGGATAATC
TGCGAGGATTAGCTACTCTGGAAGTTAGGGTAAGCCGCAAATACAAATATTGAACGACTTTGGTAATGTCTCTAAACAAACTTTTATTTTATTCGCCCTGCCACGGCACAAGGTCAATTCAACAATATATACTCAAGTTACAATGTTTCCAAACAAGCTATATTTTACATCATAACTATTTATTTAGATGGAAGTTATGC
TATTTTATCAGTAGTGCTTTCAATGACTTTATAACTATTTATATGGATGGAAGTTATGGTATTTTATCAATAGTGCATTCAGTGCCTTCCCATTAAATATGATGAGAGGCAAAATTCAATTATCTTAAATATCTATTTTTATATATTATGATATGTTTGTTTTGAACTTCATGTTGAGGACCAGTTGGTCTGTATGTATG
TTCTGTATCACGTATTATGTGAAACAGTACTGTGAGGTCTGATTCCGAAAGGAAGGCACATAATTGTATGACCAAATGCGAGGTTTGATTCTAAAAGAAGGTACACAGTTGTATGACTGAATGCAAAACGAAAAGAAAGGTAAAACAAAATCAAAGAATAAAATACAATGATGCATGCCTTTATGTAATGTCATTCATAT
CACTCTGACTATTTGTTGTGTTCTTTTGCTGCTCCATGTGTTGTCTGCATCTGCTCTTCGTAAAAAGTTATTCTCTGCCATATTTCCTTGTTGGTCTTGTACAGGCTATGTGGGATTTGAACTGAATTACTTTGTTGGACCTCTTAGTTATATGAGTAAAAAATTCCATTTGATGTTCAGTAATGCTTAAATCAATCACT
CTTTTCATGTTTTTTTTTTCCATTTATAGGTTTTTATTTATTGAGTATTTAATTGTTATTGTATGAAGATTATGCAGGTAACTACTTTTTGGAAGAGATATTTAGTTCTAATAATGATATGATTAGTTAGGAAATGTATAACACATACTAGGCATAGTTTTAAAAATCGGTCAACTCGAACTCGGACTCGGTCGAGTTGA
CCAAGTTGACCCTCCACTGAGCTAACTCGGCCTTCAAACCGGATTGGGTG
>TRINITY_DN120961_c5_g2_i10 from sample A1 / Example unspliced isoform:GTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTgtaaatctctttactgtaaactataaccctaacgttattgggcagtttttttatccctagaaaggttctgtttctttttttctgctttaagtttttgctgttttcttttatgttttatcggatttgtgctgaaact
ggtcagaatgcaaatgcgcgtagcggcattatcttttaggataaaccctaagtattcccgtcagcggtggctccatatatcgtatttggggtttacttatatatttttttttattttaaaacaatgaccaacaataaatgggactaatctcggagattttttttgaaatttatctcgtcggcgcataatgtttggtgggc
aaggccgttgccctagctttaatgaattcgtcgtgctttcaacaggaaaagtgaatgtcccttttactattttattttatttttatattaactgagcttagcaatttgtgtatattattcatttttgacgtttctgcaatagtgaatacgttttgcgatctgaaaaaatggcattcgacttttaatctggacattcggct
ctgtcgcttggtgtgctaataaatttccctgctagggttttggcgtttatctatgaaaaatagtgctatcattagtatttttgatgacgaatgcgtgttgtcaatatttgcagAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTCCAATGATGGGTTCCT
CACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAGTCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGAAAAATGGCCGTCCCA
AAAAGAGAACCTTATCAATTGGTGGGTACAACTGTATCTCAGTCTTTGGAGGAATACAAGGGAAAAGTTGGATCGATAATAAAGGAATATTTTGCTACTGACGATGTGGCTTCAGTAGCTGCTGATCTTGCTGATCTGGGCTGTCCAAGTTATCACCATTATTTTGTTAAAAAACTTATCTCCATGGCAATGGACAGGCA
TGACCGAGAGAAAGAGATGGCGGCAGTGCTATTATCCTCTCTGTATGCTGATGTGATTGAACCTGAG
Intron 5 GTAAATCTCT ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.47 | 50 | 41 | 27 |
| A2 | 34.86 | 57 | 30 | 31 |
| A3 | 38.44 | 67 | 47.7 | 36 |
| A4 | 43.1 | 68 | 59 | 44 |
| A5 | 32.81 | 57 | 25.7 | 30 |
| A6 | 37.98 | 37 | 17.3 | 28 |
| A7 | 42.11 | 44 | 29 | 35 |
| A8 | 27.66 | 17 | 7 | 6 |
| A9 | 37.95 | 49 | 34 | 26 |
| A10 | 31.94 | 54 | 20.7 | 30 |
>TRINITY_DN120961_c5_g2_i4 from sample A1 / Example spliced isoformGTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTCCAATGATGGGTTCCTCACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAG
TCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGAAAAATGGCCGTCCCAAAAAGAGTATGTGGCTCACTGATTTTCTCAATCTTCTTCTAGATGTAGC
TTCTTTATGGGATGTTTGACTTGTCTGCAACCTAGAATATTCAGGTCATAGTATATAAAAGTTACTTTCAATGTAAAGTTTGTGCTTATTGTTGTTTTCTTTGTATATTGAACTTTATTGTGATCGAGATGCTTGTCAATGCTCATTTTTATTCATTAAGGCTATGAATAGTGCAATGCATTGCTAAATTTTAGTTGTAC
TGGAGAGGAGTTACACTTTATGCCTTATTTTTTTGAGTACTTCTGAAGTAGAGCTTTCTACATGATATACTTGAAGCCCTTAAAATTCACTAGAAGCAGTTTCTAAATCTCATGTTATCCATGTAGCCATTAGAACAATTCTCAGTAAATGGCCAATTACGACTGTGTGTAAATGGCCAAGTACGACTGTGTGGATAATC
TGCGAGGATTAGCTACTCTGGAAGTTAGGGTAAGCCGCAAATACAAATATTGAACGACTTTGGTAATGTCTCTAAACAAACTTTTATTTTATTCGCCCTGCCACGGCACAAGGTCAATTCAACAATATATACTCAAGTTACAATGTTTCCAAACAAGCTATATTTTACATCATAACTATTTATTTAGATGGAAGTTATGC
TATTTTATCAGTAGTGCTTTCAATGACTTTATAACTATTTATATGGATGGAAGTTATGGTATTTTATCAATAGTGCATTCAGTGCCTTCCCATTAAATATGATGAGAGGCAAAATTCAATTATCTTAAATATCTATTTTTATATATTATGATATGTTTGTTTTGAACTTCATGTTGAGGACCAGTTGGTCTGTATGTATG
TTCTGTATCACGTATTATGTGAAACAGTACTGTGAGGTCTGATTCCGAAAGGAAGGCACATAATTGTATGACCAAATGCGAGGTTTGATTCTAAAAGAAGGTACACAGTTGTATGACTGAATGCAAAACGAAAAGAAAGGTAAAACAAAATCAAAGAATAAAATACAATGATGCATGCCTTTATGTAATGTCATTCATAT
CACTCTGACTATTTGTTGTGTTCTTTTGCTGCTCCATGTGTTGTCTGCATCTGCTCTTCGTAAAAAGTTATTCTCTGCCATATTTCCTTGTTGGTCTTGTACAGGCTATGTGGGATTTGAACTGAATTACTTTGTTGGACCTCTTAGTTATATGAGTAAAAAATTCCATTTGATGTTCAGTAATGCTTAAATCAATCACT
CTTTTCATGTTTTTTTTTTCCATTTATAGGTTTTTATTTATTGAGTATTTAATTGTTATTGTATGAAGATTATGCAGGTAACTACTTTTTGGAAGAGATATTTAGTTCTAATAATGATATGATTAGTTAGGAAATGTATAACACATACTAGGCATAGTTTTAAAAATCGGTCAACTCGAACTCGGACTCGGTCGAGTTGA
CCAAGTTGACCCTCCACTGAGCTAACTCGGCCTTCAAACCGGATTGGGTG
>TRINITY_DN120961_c5_g2_i5 from sample A1 / Example unspliced isoform:GTGAAGTTTTATGTTTCCACTGCGTCGCGTCTTTTTAATATTCTCCTTGAAATTATTTTGGATTCACGCCATAACTCTCCTGGCGTGCAGAACTCCCTCGCGTGAGACTAATATTTTGCCGTGGCCGTTGCGGTCGACAGATCACCAGATCAAATCCCGCGATTGAAGGAATATTTTCACTGCATTCTCGGGGCTCGAGG
CTGGGGCGAAATCTCAATCTTTTCACTGAAGCCTCGAGCAGGAACTGCCTCCGGATCGGTTTCTgtaaatctctttactgtaaactataaccctaacgttattgggcagtttttttatccctagcaaggtactgtttcttttttctgctttaagtttttgctgttttcttttatgttttatcggatttgtgctgaaactg
gtcagaatgcaaatgcgcgtagcggcattatcttttaggataaaccctaagtattcccgtcagcggtggctccatatatcgtatttggggtttacttatatatttttttttattttaaaacaatgaccaacaataaatgggactaatctcggagattttttttgaaatttatctcgtcggcgcataatgtttggtgggca
aggccgttgccctagctttaatgaattcgtcgtgctttcaacaggaaaagtgaatgtcccttttactattttattttatttttatattaactgagcttagcaatttgtgtatattattcatttttgacgtttctgcaatagtgaatacgttttgcgatctgaaaaaatggcattcgacttttaatctggacattcggctc
tgtcgcttggtgtgctaataaatttccctgctagggttttggcgtttatctatgaaaaatagtgctatcattagtatttttgatgacgaatgcgtgttgtcaatatttgcagAGCGATTAAGTAAATATCTGGAGTTCTCCTTCCAAGTCACTCCACAATTTTGCTTTTTTGCACAATGGCTTCCAATGATGGGTTCCTC
ACGGAAGAACAGCGAGAGCTTTTGAGAGTCGCTTCCCTGAGCAAGGAGTCGGCGCAATCTTTAAAAATCCCCATCTCTCCAAGTTCCGGACAGGATCTTCATGTGAAACTTGGTGCAGTCGGCGCAAAGAATCATGCCGGAGGTGCTTTGGCCAAGCAGCATGACAAGCGTTCGCACTCAGCGAAAAATGGCCGTCCCAA
AAAGAGTGGATGTGGTGGCAAAGGCACTTGGGGAGGATTACTTGACACTGATGGGGATTTGCACATTGATCGCAATGACCCAAACTATGATAGTGAGGAGGAACCTTATCAATTGGTGGGTACAACTGTATCTCAGTCTTTGGAGGAATACAAGGGAAAAGTTGGATCGATAATAAAGGAATATTTTGCTACTGACGATG
TGGCTTCAGTAGCTGCTGATCTTGCTGATCTGGGCTGTCCAAGTTATCACCATTATTTTGTTAAAAAACTTATCTCCATGGCAATGGACAGGCATGACCGAGAGAAAGAGATGGCGGCAGTGCTATTATCCTCTCTGTATGCTGATGTGATTGAACCTGAG