sp|Q6IVC2|TGAL1_ORYSJ ----> Transcription factor TGAL1
Intron 1 GTACTCGCTC ... GTTGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.89 | 75 | 12.3 | 12.8 |
| A2 | 15.13 | 52.3 | 10 | 11.3 |
| A3 | 14.11 | 82 | 14.2 | 10.5 |
| A4 | 14.42 | 49 | 8.8 | 4.3 |
| A5 | 17.53 | 35 | 8.1 | 3.5 |
| A6 | 11.87 | 839.8 | 118.7 | 172.6 |
| A7 | 12.08 | 808 | 116.3 | 184.3 |
| A8 | 11.54 | 930 | 127.2 | 207.6 |
| A9 | 11.95 | 830 | 117.7 | 188.1 |
| A10 | 14.27 | 567.6 | 100 | 111.9 |
>TRINITY_DN113857_c0_g1_i2 from sample A1 / Example spliced isoformGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTCTGCAAATGTCCAAGTCGTTTC
CCATCATATTGTCACTTCTGCGCAAGCAAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAATGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACGACCAGCACTCGCAGAGGCTGCACTATTACA
TAGCGGCGGGCCTGGGGTTCCAACCCGCGGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATG
TGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATATCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGA
CAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTT
TGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGACTTCACCATTTTCTTGAAAATTCTAGATGTAAT
ACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACC
>TRINITY_DN113857_c0_g1_i3 from sample A1 / Example unspliced isoform:AGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCGGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGG
AAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATATC
AGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATA
TGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGgtactcgctcttttcttttaaacgtggatttcattaatagaaatattaacgtatctacttaagattga
ttgtattttggtttggatgttgaaacagTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGACTTCACCATTTTCTTGAAAATTCTAGATGTAATACATTTAACTTCTGGTGTGTAATTGATGA
ACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACC
Intron 2 GTGAGTTTTC ... CAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.78 | 66 | 15.5 | 21.8 |
| A2 | 23.64 | 42 | 4.3 | 13 |
| A3 | 27.06 | 88.3 | 7 | 32.8 |
| A4 | 23.73 | 45 | 4.8 | 14 |
| A5 | 21.74 | 54 | 7.3 | 15 |
| A6 | 21.29 | 513 | 27 | 138.8 |
| A7 | 24.31 | 558 | 45.5 | 179.3 |
| A8 | 26.46 | 333.5 | 35.8 | 120 |
| A9 | 25.77 | 499 | 33.3 | 173.3 |
| A10 | 25.09 | 515 | 33.3 | 172.5 |
>TRINITY_DN48420_c3_g1_i3 from sample A7 / Example spliced isoformTAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTAGGATATGTTTATCCTGGTTAA
GCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTCTGCAAATGTCCAAGTCGTTTC
CCATCATATTGTCACTGCTGCGCAAGCAAGGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCATGACCAGCACTCGCAGAGGC
TGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGC
TTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTT
CGCTTTGCACGACAGCAGC
>TRINITY_DN48420_c3_g1_i2 from sample A7 / Example unspliced isoform:TAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTAGGATATGTTTATCCTGGTTAA
GCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTCTGCAAATGTCCAAGTCGTTTC
CCATCATATTGTCACTTCTGCGCAAGCAAGGTATCCGTCCTTTACAAAACTTTCCTTGTTTGTTTTCTCTGTAATTAACCTAACAGACTCATCAATTTAACGCTCTGCATGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAA
ATATTACGGAATTCTGAgtgagttttcagtcatcgcgactttcttagtagttctttaaaattcagccgatgaatttggtttaaccaaggtgtactatacagggaataaacattcaggtttcttaagatttcgttaaaatgcagatagataatcaaatttaatgaaagtgtagtttgcagagaagacgcatcaggttttta
aatatttttcgaaatgcagctggaaagtgtaatttacagagaaaaggattccgaatccctatttctaaatatttcttgcatttctttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagactaagatatatttctttttacaatgtggctcatagattcttgaatgtaatttagggaagaagcatt
cagaatttcaagtgtttctttataaatatttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagactaagatatatttctttttacaatgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcattcagaatttcaagtgtttctttataacgcaactcaggaaatgaatataatt
gtaatttagggaagaagcattcgggatttcaagcatttctttataatgcaactcaggaaatgaatatagcaaatggacttggatagaagaggcaatcagatttttagcaatttccttaaaagtcagactcatagattaaaattaatggaaatccaatgtacagAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGA
GGATCATGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAG
ATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCA
GACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCT
GCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGAT
CAAGACTTCACCATTTTCTTGAAAATTCTAGATGTAATACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATA
AAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACC
Intron 3 GTGAGTTTTC ... CAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.81 | 66 | 18 | 21 |
| A2 | 17.65 | 42 | 5 | 13 |
| A3 | 21.24 | 89 | 16 | 32 |
| A4 | 17.44 | 45 | 5 | 14 |
| A5 | 19.4 | 54 | 11 | 15 |
| A6 | 16.11 | 513 | 56 | 141 |
| A7 | 18.54 | 558 | 68 | 186 |
| A8 | 20.69 | 333.5 | 54 | 120 |
| A9 | 18.13 | 499 | 50 | 171 |
| A10 | 17.66 | 515 | 53 | 168 |
>TRINITY_DN39420_c0_g1_i1 from sample A8 / Example spliced isoformTTTAGGTTAGGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACT
AAGGCCTTCTGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTTCTGCGCAAGCAAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACG
ACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGT
CCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGCCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCC
TCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACAT
GGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGACTT
CACCATTTTCTTGAAAATTCTAGATGTAATACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATCCAAC
>TRINITY_DN39420_c0_g1_i5 from sample A8 / Example unspliced isoform:TTTAGGTTAGGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACT
AAGGCCTTCTGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTGCTGCGCAAGCAAGGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAAATATTACGGAATTCTGAgtgagttttcagtcatcgcgactttcttagtag
ttctttaaaattcagccgatgaatttggtttaaccaaggtgtactatacagggaataaacattcaggtttcttaagatttcgttaaaatgcagatagataatcaaatttaatgaaagtgtagtttgcagagaagacgcatcaggtttttaaatatttttcgaaatgcagctggaaagtgtaatttacagagaaaaggatt
ccgaatccctatttctaaatatttcttgcagccgaggtaccaaattaaataaaaatgtgatttacggaggaggagatttcaaattactaaatatttctttgaaatgaaggtcaagaagtaaatttacggaaagtgtaatttaagtaggagcaccgagatttctaaatatttctttaaaatgcgtctcttgaattaagcta
atgcaaatgtaattcacagagaccaagatatatttctttttacaatgtggctcatagattcttgaatgtaatttagggaagaagcattcagaatttcaagtgtttctttataaatatttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagaccaagatatatttctttttacaatgtggctcgta
gattcttgaacgtaagtgtaatttagggaagatgcactcagaatttcaagtgtttctttataaatatttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagaccaagatatatttctttttacaatgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcattcagaatttcaag
tgtttctttataacgcaactcaggaaatgaatataattgtaatttagggaagaagcattcgggatttcaagcatttctttataatgcaactcaggaaatgaatatagcaaatggacttggatagaagaggcaatcagatttttagcaatttccttaaaagtcagactcatagattaaaattaatggaaatccaatgtaca
gAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTG
GAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGCCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGT
CAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGAT
ATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCG
Intron 4 GTGAGTTTTC ... CAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.14 | 66 | 13 | 21 |
| A2 | 23.64 | 42 | 2 | 13 |
| A3 | 26.52 | 88.7 | 0 | 32 |
| A4 | 23.6 | 45.3 | 4 | 14 |
| A5 | 21.74 | 54 | 5 | 15 |
| A6 | 21.56 | 513 | 6 | 141 |
| A7 | 25 | 558 | 22 | 186 |
| A8 | 26.45 | 333.7 | 18 | 120 |
| A9 | 25.52 | 499 | 21 | 171 |
| A10 | 24.62 | 514.3 | 11 | 168 |
>TRINITY_DN43357_c1_g1_i1 from sample A9 / Example spliced isoformGGACTAGGCTCAAGTGAGGATTAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTA
GGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTC
TGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTGCTGCGCAAGCAAGGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAATGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATC
ACGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGG
CGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCA
GCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCAATACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGA
CATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGA
CTTCACCATTTTCTTGAAAATTCTAGATGTAATACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATT
TGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACC
>TRINITY_DN43357_c1_g1_i2 from sample A9 / Example unspliced isoform:GGACTAGGCTCAAGTGAGGATTAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTA
GGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTC
TGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTTCTGCGCAAGCAAGGTATCCGTCCTTTACAAAACTTTCCTTGTTTGTTTTCTCTGTAATTAACCTAACAGACTCATCAATTTAACGCTCTGCATGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAG
CCGTTGGAAATGCGTCCTCAAATATTACGGAATTCTGAgtgagttttcagtcatcgcgactttcttagtagttctttaaaattcagccgatgaatttggtttaaccaaggtgtactatacagggaataaacattcaggtttcttaagatttcgttaaaatgcagatagataatcaaatttaatgaaagtgtagtttgcag
agaagacgcatcaggtttttaaatatttttcgaaatgcagctggaaagtgtaatttacagagaaaaggattccgaatccctatttctaaatatttcttgcatttctttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagactaagatatatttctttttacaatgtggctcgtagattcttgaac
gtaagtgtaatttagggaagatgcattcagaatttcaagtgtttctttataaatatttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagaccaagatatatttctttttacaatgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcattcagaatttcaagtgtttctttat
aacgcaactcaggaaatgaatataattgtaatttagggaagaagcattcgggatttcaagcatttctttataatgcaactcaggaaatgaatatagcaaatggacttggatagaagaggcaatcagatttttagcaatttccttaaaagtcagactcatagattaaaattaatggaaatccaatgtacagAGAAGAAGCA
TTCGGACTTCTATATGGATTGGATGGAGGATCACGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTAC
TGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAAC
CCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCAATACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAA
TGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCG
Intron 5 GTGAGTTTTC ... CAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.81 | 66 | 18 | 21 |
| A2 | 17.65 | 42 | 5 | 13 |
| A3 | 21.24 | 89 | 16 | 32 |
| A4 | 17.44 | 45 | 5 | 14 |
| A5 | 19.4 | 54 | 11 | 15 |
| A6 | 16.11 | 513 | 56 | 141 |
| A7 | 18.54 | 558 | 68 | 186 |
| A8 | 20.69 | 333.5 | 54 | 120 |
| A9 | 18.13 | 499 | 50 | 171 |
| A10 | 17.66 | 515 | 53 | 168 |
>TRINITY_DN39420_c0_g1_i1 from sample A8 / Example spliced isoformTTTAGGTTAGGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACT
AAGGCCTTCTGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTTCTGCGCAAGCAAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACG
ACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGT
CCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGCCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCC
TCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACAT
GGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGACTT
CACCATTTTCTTGAAAATTCTAGATGTAATACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATCCAAC
>TRINITY_DN39420_c0_g1_i2 from sample A8 / Example unspliced isoform:TTTAGGTTAGGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACT
AAGGCCTTCTGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTGCTGCGCAAGCAAGGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAAATATTACGGAATTCTGAgtgagttttcagtcatcgcgactttcttagtag
ttctttaaaattcagccgatgaatttggtttaaccaaggtgtactatacagggaataaacattcaggtttcttaagatttcgttaaaatgcagatagataatcaaatttaatgaaagtgtagtttgcagagaagacgcatcaggtttttaaatatttttcgaaatgcagctggaaagtgtaatttacagagaaaaggatt
ccgaatccctatttctaaatatttcttgcatttctttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagaccaagatatatttctttttacaatgtggctcatagattcttgaatgtaatttagggaagaagcattcagaatttcaagtgtttctttataaatatttaaaatgcgtctcttgaatt
aagctaatgcaaatgtaattcacagagaccaagatatatttctttttacaatgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcactcagaatttcaagtgtttctttataaatatttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagaccaagatatatttctttttaca
atgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcattcagaatttcaagtgtttctttataacgcaactcaggaaatgaatataattgtaatttagggaagaagcattcgggatttcaagcatttctttataatgcaactcaggaaatgaatatagcaaatggacttggatagaagaggcaatcaga
tttttagcaatttccttaaaagtcagactcatagattaaaattaatggaaatccaatgtacagAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTAT
TACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGAT
AAGGATCAGCCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAAC
TGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCG
Intron 6 GTGAGTTTTC ... CAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.14 | 66 | 13 | 21 |
| A2 | 23.64 | 42 | 2 | 13 |
| A3 | 26.52 | 88.7 | 0 | 32 |
| A4 | 23.6 | 45.3 | 4 | 14 |
| A5 | 21.74 | 54 | 5 | 15 |
| A6 | 21.56 | 513 | 6 | 141 |
| A7 | 25 | 558 | 22 | 186 |
| A8 | 26.45 | 333.7 | 18 | 120 |
| A9 | 25.52 | 499 | 21 | 171 |
| A10 | 24.62 | 514.3 | 11 | 168 |
>TRINITY_DN43357_c1_g1_i1 from sample A9 / Example spliced isoformGGACTAGGCTCAAGTGAGGATTAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTA
GGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTC
TGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTGCTGCGCAAGCAAGGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAATGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATC
ACGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGG
CGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCA
GCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCAATACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGA
CATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGA
CTTCACCATTTTCTTGAAAATTCTAGATGTAATACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATT
TGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACC
>TRINITY_DN43357_c1_g1_i3 from sample A9 / Example unspliced isoform:GGACTAGGCTCAAGTGAGGATTAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTA
GGATATGTTTATCCTGGTTAAGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTC
TGCAAATGTCCAAGTCGTTTCCCATCATATTGTCACTTCTGCGCAAGCAAGGTATCCGTCCTTTACAAAACTTTCCTTGTTTGTTTTCTCTGTAATTAACCTAACAGACTCATCAATTTAACGCTCTGCATGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAG
CCGTTGGAAATGCGTCCTCAAATATTACGGAATTCTGAgtgagttttcagtcatcgcgactttcttagtagttctttaaaattcagccgatgaatttggtttaaccaaggtgtactatacagggaataaacattcaggtttcttaagatttcgttaaaatgcagatagataatcaaatttaatgaaagtgtagtttgcag
agaagacgcatcaggtttttaaatatttttcgaaatgcagctggaaagtgtaatttacagagaaaaggattccgaatccctatttctaaatatttcttgcagccgaggtaccaaattaaataaaaatgtgatttacggaggaggagatttcaaattactaaatatttctttgaaatgaaggtcaagaagtaaatttacgg
aaagtgtaatttaagtaggagcaccgagatttctaaatatttctttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagactaagatatatttctttttacaatgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcattcagaatttcaagtgtttctttataaatatttaaaa
tgcgtctcttgaattaagctaatgcaaatgtaattcacagagaccaagatatatttctttttacaatgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcattcagaatttcaagtgtttctttataacgcaactcaggaaatgaatataattgtaatttagggaagaagcattcgggatttcaagca
tttctttataatgcaactcaggaaatgaatatagcaaatggacttggatagaagaggcaatcagatttttagcaatttccttaaaagtcagactcatagattaaaattaatggaaatccaatgtacagAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACGACCAGCACTCGCAGAGGCTGCACTATT
ACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTA
ATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCA
CGACAGCAGCAATACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTC
TTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCG
Intron 7 GTGAGTTTTC ... CAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 66 | 15.5 | 22 |
| A2 | 23.64 | 42 | 5 | 13 |
| A3 | 27.27 | 88 | 6 | 33 |
| A4 | 23.73 | 45 | 5 | 14 |
| A5 | 21.74 | 54 | 6.5 | 15 |
| A6 | 21.2 | 513 | 23 | 138 |
| A7 | 24.08 | 558 | 46.5 | 177 |
| A8 | 26.46 | 333.5 | 34.5 | 120 |
| A9 | 25.85 | 499 | 34 | 174 |
| A10 | 25.26 | 515 | 34.5 | 174 |
>TRINITY_DN48420_c3_g1_i3 from sample A7 / Example spliced isoformTAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTAGGATATGTTTATCCTGGTTAA
GCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTCTGCAAATGTCCAAGTCGTTTC
CCATCATATTGTCACTGCTGCGCAAGCAAGGAAAATTAGTAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCATGACCAGCACTCGCAGAGGC
TGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGC
TTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTT
CGCTTTGCACGACAGCAGC
>TRINITY_DN48420_c3_g1_i7 from sample A7 / Example unspliced isoform:TAAATTGTGGAGTGTTCTTTAATCTCCTTAAAGATTGGTGAAATTGAATTGCAAGTAGGCTGTGATAAAAATAACAGAATCAAAGACGTTAATTTTAAAACAAAAGGTGATTCTCTATTCTACAAATGAAGGATGTAATTTATAGTCGATTATTTGTTTTCTAGGTTAAATTTAGGTTAGGATATGTTTATCCTGGTTAA
GCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTCTGCAAATGTCCAAGTCGTTTC
CCATCATATTGTCACTTCTGCGCAAGCAAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAACGCGTCCTCAAATATTACGGAATTCTGAgtgagttttcagtcatcgcgactttcttagtagttctttaaaattcagccgatgaatttggtttaaccaaggtgt
actatacagggaataaacattcaggtttcttaagatttcgttaaaatgcagatagataatcaaatttaatgaaagtgtagtttgcagagaagacgcatcaggtttttaaatatttttcgaaatgcagctggaaagtgtaatttacagagaaaaggattccgaatccctatttctaaatatttcttgcagccgaggtacca
aattaaataaaaatgtgatttacggaggaggagatttcaaattactaaatatttctttgaaatgaaggtcaagaagtaaatttacggaaagtgtaatttaagtaggagcaccgagatttctaaatatttctttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagactaagatatatttcttttta
caatgtggctcatagattcttgaatgtaatttagggaagaagcattcagaatttcaagtgtttctttataaatatttaaaatgcgtctcttgaattaagctaatgcaaatgtaattcacagagactaagatatatttctttttacaatgtggctcgtagattcttgaacgtaagtgtaatttagggaagatgcattcaga
atttcaagtgtttctttataacgcaactcaggaaatgaatataattgtaatttagggaagaagcattcgggatttcaagcatttctttataatgcaactcaggaaatgaatatagcaaatggacttggatagaagaggcaatcagatttttagcaatttccttaaaagtcagactcatagattaaaattaatggaaatcc
aatgtacagAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCATGACCAGCACTCGCAGAGGCTGCACTATTACATAGCGGCGGGCCTGGGGTTCCAACCCGCAGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATG
CCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATGTGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCA
GGCCATGTCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGACAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGG
CCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTTTGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAG
TTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGACTTCACCATTTTCTTGAAAATTCTAGATGTAATACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTG
GGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACC
Intron 8 GTATCCGTCC ... AAATTAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.66 | 120.2 | 47.8 | 8.5 |
| A2 | 27.38 | 106.6 | 41.6 | 3 |
| A3 | 28.64 | 153.9 | 64.1 | 3.9 |
| A4 | 26.86 | 130.4 | 49.7 | 9.2 |
| A5 | 29.63 | 149.5 | 65.7 | 13.5 |
| A6 | 31.24 | 873.5 | 415.1 | 23.3 |
| A7 | 31.01 | 1004.3 | 471.8 | 36.3 |
| A8 | 28.36 | 475.8 | 195.4 | 26.4 |
| A9 | 31.69 | 924.7 | 449.6 | 28 |
| A10 | 32.4 | 987.2 | 497.1 | 25.9 |
>TRINITY_DN113857_c0_g1_i2 from sample A1 / Example spliced isoformGCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTCTGCAAATGTCCAAGTCGTTTC
CCATCATATTGTCACTTCTGCGCAAGCAAGACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAATGCGTCCTCAAATATTACGGAATTCTGAAGAAGAAGCATTCGGACTTCTATATGGATTGGATGGAGGATCACGACCAGCACTCGCAGAGGCTGCACTATTACA
TAGCGGCGGGCCTGGGGTTCCAACCCGCGGTAGAAGAAGAGCTGAAACGCTACAGGAGCTATTACACAGTCAGCGCGATCCCTGCCAAGCCGCTCCACATGAAAGAGATGGTGATGCCTGATTGGAAGCCTCTACTGGAGAACGCTTTCGCGTGGCTGGGAGATTGGCGTCCTTCCGCCATTCTCGGCTTTCTGCTAATG
TGCCACGAGGCGAACGCAGTCCAGCTGCCAACTCATCACGTGGACTTCGTGAAAGAGCTGATAAGGATCAGTCACCACAACGAGACCATCCTCGACGAGCGGCTGGCGGAGTACCAGGCCATATCAGCATTCAACCCCGCCGTCGCCACCCCTCGCAACGCAGACCAGCCTCTTCCTGCGCTCTTTTTCGCTTTGCACGA
CAGCAGCGGTACAAGTAATAATAAGAACGACGCGAAGATGAAAAGCCACGTCAAGGATGAACTGGTGACCTGCGTGCGAAGGGATCTGACGCGGATGAACAGAATTGTGATGCAGGCCCACGATATGCGTTTCAATGCCGTGGAGGTTGTGGTGAACCGGCTGCTGACATGGACGCAGGCTGCATATTTCTTGTTTCTTT
TGGCGAAGTTCCAAACCACGTTCCATGCCTTTGCTGTGTCCAGGATGGATAAATTCGTTCCGGTTCGGACGAGCAAACAAGCGCAAGAAGATCCCGGTGTGGTTCATGTTGAAAAGTTCGGGTGAATCAGTTCCCCTCTTCTATGTGCTACGTGTAAATGATCAAGACTTCACCATTTTCTTGAAAATTCTAGATGTAAT
ACATTTAACTTCTGGTGTGTAATTGATGAACTCATGTAAGATTTTTTTCGTTCGACGTTTACTGTCTTCTCAATGAATTTGTTTTGTCCATTTGCTGTCTTCTCAATATCATTTTGGGAAATAAAATTTGAGATTCAACCATAACCATGATATTGAGAAATAAAATTTGAGATTCAACC
>TRINITY_DN113857_c0_g1_i5 from sample A1 / Example unspliced isoform:GCCTAGGTTGGGTTAAAGAATTTCAATAAAAAGCAAACCGGGCGATATTCCGATTCCAATATCCCACAGGTTGCAAAGACGAAGCGAGAGCAAGAAAATAGAGTGTTGTTATTTTTGTGCATTTTGGTTCTGAAGATGATCAGACGACGGAAGCCAGCAGTGCTTAGACTAAGGCCTTCTGCAAATGTCCAAGTCGTTTC
CCATCATATTGTCACTTCTGCGCAAGCAAGgtatccgtcctttacaaaactttccttgtttgttttctctgtaattaacctaacagactcatcaatttaacgctctgcatgaaaattagtagACCTCAAGAACATTATTCACACGTCCACAAGGCTGCCGAGAAGTGCAGAAGATGCAGCCGTTGGAAATGCGTCCTCAA
ATATTACGGAATTCTGAGTGAGTTTTCAGTCATCGCGACTTTCTTAGTATTTCTTTAAAATTCAGCCGATGAATTTGGTTTAACCAAGGTGTACTATACAGGGAATAAACATTCAGGTTTCTTAAGATTTCGTTAAAATGCAGATAGATAATCAAATTTAATGAAAGTGTAGTTTGCAGAGAAGACGCATCAGGTTTTTA
AATATTTTTCGAAATGCAGCTGGAAAGTGTAATTTACAGAGAAAAGGATTCCGAATCCCTATTTCTAAATATTTCTTGCATTTCTTTAAAATGCGTCTCTTGAATTAAGCTAATGCAAATGTAATTCACAGAGACTAAGATATATTTCTTTTTACAATGTGGCTCATAGATTCTTGAATGTAATTTAGGGAAGAAGCATT
CAGAATTTCAAGTGTTTCTTTATAACGCAACTCAGGAAATGAATATAATTGTAATTTAGGGAAGAAGCATTCGGGATTTCAAGCATTTCTTTATAATGCAACTCAGGAAATGAATATAGCAAATGGACTTGGATAGAAGAGGCAATCAGATTTTTAGCAATTTCCTTAAAAGTCAGACTCATAGATAAAAATTAATGGAA
ATCCAATGTACAGAGA